CmaCh02G014280 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G014280
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S10
Location	Cma_Chr02 : 8236190 .. 8237921 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTACGCTGTGAAGGAAGATAGTGGAAGGGTTTCTTTGTAGCTGCCGCTTCTTCCGCCCGCCGCCGTTACCGATCACTTCGTCAAAATGGTATGTCTTTTTTCCTCTCTGTGTATGATCCATGTCCAAATTTATGTGTTTGTTAATCCAGAAACGAACGGTAGATGTTCGGGAAATTAAAGGGAACTATAGGTTAGTTGTTACTCCCGTTAACTGGCGCCATTATTGGATGTATTTGGATTTGGATGCCATTAGTTTTAGCGACTTGAACTGTGGAGTGTTTTTTATTTTGTTGTTCATAATGTTAATCGAACCTTGATGGGGAGTGCATCTGTTGAAACGATCCGAATGTTGCCTTTTTAGATCATTCCAGAGAAGAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGGTAGTGAATTATATTCAATTGTGCGTTCGGTTAGGGTTTTTGTACTTCGTTGGGTAATTTATTGTTTATTTGTTGTTGTTTCGTATCAGAGGGAGTTTGTTATGCCAAGAAGGACTTCAATCTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAAGTGATTAAGCTGATGCAGAGTTTCAAGTCTAAAGAGTATGTTCGTGAGACATTTGCTTGGATGCATTACTATTGGTATCTCACCAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCAGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGGTTGGTCTTCTTCCCTTTTTGTGATGATTTTTCCACCTTTGGCTTTTTTGTTTTTGCTCAACTTTGTACTGGGTTTTAGCTTGTTGAGTTTACTCATGGTATTACTACTTCTCTGTTGCATAATTGTCGATTCTAAATAGGCTTCTTCTGCATCGATTAGATTGAATTTGGAACTTAGTTAATCTCTCACATTGATATGACTTGGCTACTGATTGTGTACTACAATTGATATCGGAATTATTTCATATTTTGATTATTCTCTTATCCTCATCCCATGGTGTTTCTGTTGATTAGTCCGTCAAGATTTGACGGAGAAAGAAGATTTGGTGGTGATCGGGATGGCTACCGTGGTGGTCCTCGTGGGTCTGGTGGTGATTTTGGTGATAAGGGTGGAGCTCCTGCTGATTACAGACCTTCATTCGGGGTAAGCAGTTTTGCCACTCTTAATATTTCCCAACTCTTGATACTCATACTCAAAATAGTTCATTTGTAATTTGTATGAGATCGGTGAGATCCCAACTAGAAATTGTTTGATCTTGATGTTAATATAAATTTGAATTTTAGTTTCCGTTTCCTCTCCCAGTTGAAGGTAGTAAAGTTAATATTGTCACCACATTGGTGGATTTATCACTGTAGGGTCCTGGTGGAAGGCCTGGGTTTGGGCGTGGAGCTGGTGGCTATGGAGGAGCGCCGGCACCCTCAAATCTCGAATGAGACAACATCAATAGGCTTATGGGGAGTGTTTTTGTTGTTAGTTTTAGTTTCTAAACAAAATGAACTGCAGATGATCTTGAATCAAACTCATGAGATTATATCAGTTTTGCTTGCCTATAATTGATTGTCGGATTTTTTTTATTGCTGAAGTTTGTTTGAGCTCCCTTGCTGATCCCCAAAATTCAATTCTCACTATTTTTAGATCATAAATTTATGAACTTATTCCGGAAGTTGTTGC

mRNA sequence

TTTACGCTGTGAAGGAAGATAGTGGAAGGGTTTCTTTGTAGCTGCCGCTTCTTCCGCCCGCCGCCGTTACCGATCACTTCGTCAAAATGATCATTCCAGAGAAGAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGTTATGCCAAGAAGGACTTCAATCTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAAGTGATTAAGCTGATGCAGAGTTTCAAGTCTAAAGAGTATGTTCGTGAGACATTTGCTTGGATGCATTACTATTGGTATCTCACCAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCAGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGTCCGTCAAGATTTGACGGAGAAAGAAGATTTGGTGGTGATCGGGATGGCTACCGTGGTGGTCCTCGTGGGTCTGGTGGTGATTTTGGTGATAAGGGTGGAGCTCCTGCTGATTACAGACCTTCATTCGGGGGTCCTGGTGGAAGGCCTGGGTTTGGGCGTGGAGCTGGTGGCTATGGAGGAGCGCCGGCACCCTCAAATCTCGAATGAGACAACATCAATAGGCTTATGGGGAGTGTTTTTGTTGTTAGTTTTAGTTTCTAAACAAAATGAACTGCAGATGATCTTGAATCAAACTCATGAGATTATATCAGTTTTGCTTGCCTATAATTGATTGTCGGATTTTTTTTATTGCTGAAGTTTGTTTGAGCTCCCTTGCTGATCCCCAAAATTCAATTCTCACTATTTTTAGATCATAAATTTATGAACTTATTCCGGAAGTTGTTGC

Coding sequence (CDS)

ATGATCATTCCAGAGAAGAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGTTATGCCAAGAAGGACTTCAATCTGGCCAAGCACCCAGAAATCGATGTGCCTAATTTGCAAGTGATTAAGCTGATGCAGAGTTTCAAGTCTAAAGAGTATGTTCGTGAGACATTTGCTTGGATGCATTACTATTGGTATCTCACCAACGATGGCATTGAGTTTTTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCAGCTGGTCGACCATTTGGTGGCCCATCTGGAGACCGCCCACGTCCGTCAAGATTTGACGGAGAAAGAAGATTTGGTGGTGATCGGGATGGCTACCGTGGTGGTCCTCGTGGGTCTGGTGGTGATTTTGGTGATAAGGGTGGAGCTCCTGCTGATTACAGACCTTCATTCGGGGGTCCTGGTGGAAGGCCTGGGTTTGGGCGTGGAGCTGGTGGCTATGGAGGAGCGCCGGCACCCTCAAATCTCGAATGA

Protein sequence

MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRPSRFDGERRFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE

Homology

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BLAST of CmaCh02G014280 vs. Swiss-Prot
Match: RS10B_ORYSJ (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.2e-70
Identity = 141/183 (77.05%), Postives = 157/183 (85.79%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIP+KNR EI KYLFQEGV YAKKD+NLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPR-PSRFDGE 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPR P RF+G+
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 RRFGGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPS 180
           R   GDRDGYRGGPRG+ GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSS 180

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BLAST of CmaCh02G014280 vs. Swiss-Prot
Match: RS10A_ORYSJ (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.2e-70
Identity = 141/183 (77.05%), Postives = 157/183 (85.79%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIP+KNR EI KYLFQEGV YAKKD+NLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPR-PSRFDGE 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPR P RF+G+
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 RRFGGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPS 180
           R   GDRDGYRGGPRG+ GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSS 180

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BLAST of CmaCh02G014280 vs. Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70
Identity = 143/177 (80.79%), Postives = 153/177 (86.44%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII E NRREI KYLF+EGVC+AKKDFNL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR R P R DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
              GDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

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BLAST of CmaCh02G014280 vs. Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-68
Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MII E NRREISKYLF+EGV +AKKDFNL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGE 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPR P R DGE
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGE 120

Query: 121 RRFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPS 179
           RRF GDRDGYRGGP+ SGG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S
Sbjct: 121 RRF-GDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 179

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BLAST of CmaCh02G014280 vs. Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-66
Identity = 137/177 (77.40%), Postives = 148/177 (83.62%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII E NR+EI KYLF+EGVC+AKKDFNLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRPSRFD-GER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR R  R + G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
              GDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

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BLAST of CmaCh02G014280 vs. TrEMBL
Match: A0A0A0KK65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.7e-92
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIPEKNR+EISKYLFQEGVCYAKKD+NLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR PSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RF GDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RF-GDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

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BLAST of CmaCh02G014280 vs. TrEMBL
Match: A0A067K0R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20545 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.9e-87
Identity = 164/179 (91.62%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQ+KP GRP GGP GDRPR PSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQSKPLGRPMGGPPGDRPRGPSRFDGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 179
           RFGGDRDGYRGGPRG GG+FGDKGGAPADYRP++GG GGRPGFGRGAGG+G  PA SNL
Sbjct: 121 RFGGDRDGYRGGPRGPGGEFGDKGGAPADYRPTYGGSGGRPGFGRGAGGFGAGPASSNL 179

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BLAST of CmaCh02G014280 vs. TrEMBL
Match: A0A0S3T5U6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G219900 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-86
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNRREI KYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1   MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RF+GER
Sbjct: 61  WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 179
           RFGGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGY GAP  SN+
Sbjct: 121 RFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGY-GAPTSSNI 178

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BLAST of CmaCh02G014280 vs. TrEMBL
Match: A0A151TJU9_CAJCA (40S ribosomal protein S10-1 (Fragment) OS=Cajanus cajan GN=KK1_013647 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.4e-86
Identity = 167/180 (92.78%), Postives = 171/180 (95.00%), Query Frame = 1


Query: 2   IIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IIPEKNRREI KYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFAW
Sbjct: 4   IIPEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAW 63

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGERR 121
           MHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RFDGERR
Sbjct: 64  MHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERR 123

Query: 122 FGGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGY-GGAPAPSNL 179
           FGGDRDGYRGGPRG GGDF GDKGGAPADYRPSFGGPGGRPGFGRGAGGY GGAP  SN+
Sbjct: 124 FGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAPTSSNI 183

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BLAST of CmaCh02G014280 vs. TrEMBL
Match: V7CJZ8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G159600g PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-86
Identity = 164/179 (91.62%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNRREI KYLFQEGVC+AKKDFNLAKHPEIDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1   MIISEKNRREICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RFDGER
Sbjct: 61  WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 179
           RFGGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGP GRPGFGRGAGG+ GAP  SN+
Sbjct: 121 RFGGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPSGRPGFGRGAGGF-GAPTSSNI 178

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BLAST of CmaCh02G014280 vs. TAIR10
Match: AT4G25740.1 (AT4G25740.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-71
Identity = 143/177 (80.79%), Postives = 153/177 (86.44%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII E NRREI KYLF+EGVC+AKKDFNL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR R P R DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
              GDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of CmaCh02G014280 vs. TAIR10
Match: AT5G41520.1 (AT5G41520.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-69
Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MII E NRREISKYLF+EGV +AKKDFNL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGE 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPR P R DGE
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGE 120

Query: 121 RRFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPS 179
           RRF GDRDGYRGGP+ SGG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S
Sbjct: 121 RRF-GDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGS 179

[Close]

BLAST of CmaCh02G014280 vs. TAIR10
Match: AT5G52650.1 (AT5G52650.1 RNA binding Plectin/S10 domain-containing protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-67
Identity = 137/177 (77.40%), Postives = 148/177 (83.62%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII E NR+EI KYLF+EGVC+AKKDFNLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRPSRFD-GER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR R  R + G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
              GDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

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BLAST of CmaCh02G014280 vs. NCBI nr
Match: gi|778699512|ref|XP_011654726.1| (PREDICTED: 40S ribosomal protein S10-like [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIPEKNR+EISKYLFQEGVCYAKKD+NLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR PSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RF GDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RF-GDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmaCh02G014280 vs. NCBI nr
Match: gi|802736982|ref|XP_012086830.1| (PREDICTED: 40S ribosomal protein S10 [Jatropha curcas])

HSP 1 Score: 329.3 bits (843), Expect = 4.1e-87
Identity = 164/179 (91.62%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQ+KP GRP GGP GDRPR PSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQSKPLGRPMGGPPGDRPRGPSRFDGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 179
           RFGGDRDGYRGGPRG GG+FGDKGGAPADYRP++GG GGRPGFGRGAGG+G  PA SNL
Sbjct: 121 RFGGDRDGYRGGPRGPGGEFGDKGGAPADYRPTYGGSGGRPGFGRGAGGFGAGPASSNL 179

[Close]

BLAST of CmaCh02G014280 vs. NCBI nr
Match: gi|965614957|dbj|BAU00590.1| (hypothetical protein VIGAN_10219900 [Vigna angularis var. angularis])

HSP 1 Score: 327.4 bits (838), Expect = 1.6e-86
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNRREI KYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1   MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RF+GER
Sbjct: 61  WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 120

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNL 179
           RFGGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGY GAP  SN+
Sbjct: 121 RFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGY-GAPTSSNI 178

[Close]

BLAST of CmaCh02G014280 vs. NCBI nr
Match: gi|1012356133|gb|KYP67320.1| (40S ribosomal protein S10-1, partial [Cajanus cajan])

HSP 1 Score: 327.0 bits (837), Expect = 2.0e-86
Identity = 167/180 (92.78%), Postives = 171/180 (95.00%), Query Frame = 1


Query: 2   IIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IIPEKNRREI KYLFQEGVCYAKKDFNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETFAW
Sbjct: 4   IIPEKNRREICKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAW 63

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGERR 121
           MHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RFDGERR
Sbjct: 64  MHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERR 123

Query: 122 FGGDRDGYRGGPRGSGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGY-GGAPAPSNL 179
           FGGDRDGYRGGPRG GGDF GDKGGAPADYRPSFGGPGGRPGFGRGAGGY GGAP  SN+
Sbjct: 124 FGGDRDGYRGGPRGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGGAPTSSNI 183

[Close]

BLAST of CmaCh02G014280 vs. NCBI nr
Match: gi|951047930|ref|XP_014519565.1| (PREDICTED: uncharacterized protein LOC106776596 [Vigna radiata var. radiata])

HSP 1 Score: 325.9 bits (834), Expect = 4.5e-86
Identity = 165/178 (92.70%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MIIPEKNRREISKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNRREI KYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 328 MIISEKNRREICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 387

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPR-PSRFDGER 120
           WMHYYW+LTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP GDRPR P RF+GER
Sbjct: 388 WMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGER 447

Query: 121 RFGGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSN 178
           RFGGDRDGYRGGPRG GGDFG+KGGAPADYRPSFGGPGGRPGFGRGAGGY GAP  SN
Sbjct: 448 RFGGDRDGYRGGPRGPGGDFGEKGGAPADYRPSFGGPGGRPGFGRGAGGY-GAPTSSN 504

The following BLAST results are available for this feature:

BLAST of CmaCh02G014280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS10B_ORYSJ	1.2e-70	77.05	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica GN=RPS10-2 PE=2 SV=1	[more]
RS10A_ORYSJ	1.2e-70	77.05	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica GN=RPS10-1 PE=2 SV=1	[more]
RS101_ARATH	2.0e-70	80.79	40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1	[more]
RS102_ARATH	2.5e-68	79.67	40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1	[more]
RS103_ARATH	2.3e-66	77.40	40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2	[more]

BLAST of CmaCh02G014280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK65_CUCSA	1.7e-92	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152800 PE=4 SV=1	[more]
A0A067K0R0_JATCU	2.9e-87	91.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20545 PE=4 SV=1	[more]
A0A0S3T5U6_PHAAN	1.1e-86	92.18	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.10G219900 PE=...	[more]
A0A151TJU9_CAJCA	1.4e-86	92.78	40S ribosomal protein S10-1 (Fragment) OS=Cajanus cajan GN=KK1_013647 PE=4 SV=1	[more]
V7CJZ8_PHAVU	4.1e-86	91.62	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G159600g PE=4 SV=1	[more]

BLAST of CmaCh02G014280 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25740.1	1.2e-71	80.79	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	1.4e-69	79.67	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	1.3e-67	77.40	RNA binding Plectin/S10 domain-containing protein	[more]

BLAST of CmaCh02G014280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699512\|ref\|XP_011654726.1\|	2.5e-92	97.22	PREDICTED: 40S ribosomal protein S10-like [Cucumis sativus]	[more]
gi\|802736982\|ref\|XP_012086830.1\|	4.1e-87	91.62	PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]	[more]
gi\|965614957\|dbj\|BAU00590.1\|	1.6e-86	92.18	hypothetical protein VIGAN_10219900 [Vigna angularis var. angularis]	[more]
gi\|1012356133\|gb\|KYP67320.1\|	2.0e-86	92.78	40S ribosomal protein S10-1, partial [Cajanus cajan]	[more]
gi\|951047930\|ref\|XP_014519565.1\|	4.5e-86	92.70	PREDICTED: uncharacterized protein LOC106776596 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005326	S10_plectin_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014280.1	CmaCh02G014280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 3..94 score: 2.6
None	No IPR available	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 2..178 score: 1.1E
None	No IPR available	PANTHER	PTHR12146:SF7	SUBFAMILY NOT NAMED	coord: 2..178 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G014280	Cucsa.303430	Cucumber (Gy14) v1	cgycmaB0837
CmaCh02G014280	Cla011418	Watermelon (97103) v1	cmawmB568
CmaCh02G014280	Csa5G152800	Cucumber (Chinese Long) v2	cmacuB608
CmaCh02G014280	MELO3C005706	Melon (DHL92) v3.5.1	cmameB530
CmaCh02G014280	ClCG01G002390	Watermelon (Charleston Gray)	cmawcgB518
CmaCh02G014280	CSPI05G05090	Wild cucumber (PI 183967)	cmacpiB614
CmaCh02G014280	CmoCh02G014620	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G014280	CmoCh15G013150	Cucurbita moschata (Rifu)	cmacmoB583
CmaCh02G014280	Lsi09G002250	Bottle gourd (USVL1VR-Ls)	cmalsiB530
CmaCh02G014280	Cp4.1LG13g01260	Cucurbita pepo (Zucchini)	cmacpeB601
CmaCh02G014280	Cp4.1LG05g03120	Cucurbita pepo (Zucchini)	cmacpeB647
CmaCh02G014280	MELO3C005706.2	Melon (DHL92) v3.6.1	cmamedB609
CmaCh02G014280	CsaV3_5G002500	Cucumber (Chinese Long) v3	cmacucB0730
CmaCh02G014280	Cla97C01G002440	Watermelon (97103) v2	cmawmbB600
CmaCh02G014280	CsGy5G002390	Cucumber (Gy14) v2	cgybcmaB635
CmaCh02G014280	Carg16615	Silver-seed gourd	carcmaB1283

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G014280	CmaCh15G012500	Cucurbita maxima (Rimu)	cmacmaB312

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G014280	Melon (DHL92) v3.6.1	cmamedB638
CmaCh02G014280	Silver-seed gourd	carcmaB1268
CmaCh02G014280	Cucumber (Chinese Long) v3	cmacucB0715
CmaCh02G014280	Watermelon (97103) v2	cmawmbB650
CmaCh02G014280	Wax gourd	cmawgoB0719
CmaCh02G014280	Wax gourd	cmawgoB0747
CmaCh02G014280	Cucumber (Gy14) v1	cgycmaB0372
CmaCh02G014280	Cucumber (Gy14) v1	cgycmaB0720
CmaCh02G014280	Wild cucumber (PI 183967)	cmacpiB605
CmaCh02G014280	Wild cucumber (PI 183967)	cmacpiB647
CmaCh02G014280	Cucumber (Chinese Long) v2	cmacuB599
CmaCh02G014280	Melon (DHL92) v3.5.1	cmameB559
CmaCh02G014280	Melon (DHL92) v3.5.1	cmameB581
CmaCh02G014280	Watermelon (Charleston Gray)	cmawcgB561
CmaCh02G014280	Watermelon (Charleston Gray)	cmawcgB564
CmaCh02G014280	Watermelon (97103) v1	cmawmB566
CmaCh02G014280	Bottle gourd (USVL1VR-Ls)	cmalsiB539