CmaCh02G013440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G013440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Acytochrome-C oxidase/electron carrier protein
Location	Cma_Chr02 : 7859449 .. 7861539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCCGCCAAGTCGTCGTCTATCATTCGCCTCCACCAGTGGCAGTTTCCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCCCCCAAATTCAAGTGAGTTTCAATCCATTCACCTATTTCTTTAGGATTTAGAAACCAGGGATCCTTCTTTGATAAACTGATCTAGGATGGGAGTTGTAATGCTTTAATCATTTATTTTTTCTGTTTATTCTTCTCCGCGAATGTTGTTGTGCTTGATGTAATCCTGCTTCAAATGATTTATCTGCCTTAGGATTTTAGGTTTTTACCTTCGTGTGCGATTTTCGGGGATTTAGATTTATGCGACACTATCGATTGAAATGCGATATAACTTCCATAATTTACCATTGAATCATCGATCTCGAAAAGGAGAAAAGTTGATGGAATCGATCTTTTTGGTTTTTTCGTGTAGTTCTCATTTTTATTGCCTATTTTGTGGAAATTAGTACATTTTTCGTTCATCAGTCGCTGGAGATGAGAGATTGCATTTTCCTTCCAACTAGGGTTAGTCTAACAGAAACTGCTGGGAATTAGTTTTGAATTTCCTGGCTCATTATCGTATATGGCATTTATTAAATTGGCGATGCAGATGAGAATATGTGTAAGAATGGAGATTGACATCATTCTTGCTAGTTATGTATTGATAAGCGACACATATAATGTTTCAGTCGGACTTAGTGTTGATTAAGATACATGAGAAAGTTTAGATATGATTTGAGATCATCATGTCATATTATTTGAGTTTTGATATTTTCTGTAATTCATGAATGCTTGGAATCAAGCTTTAAAATACAACCAGAAAACAGTAGTAAAAGGGTTGGTTGAACTCATTAAGTAACCCACTACCAACGCCTAAAGCCACCACCGTTTGGACTTTGTAGTGGAATTGGAGCTTGAGTTGAGGCTTACGCCTTTCAAGCCAAGGCCTCAAAGTGCAAGTAAAAAGGCTTTTACACTCTACGTTCAGAGGCGTTAGGCTCTTTTTATGTGTCGTGCTGGAGGTAAGCTCTATTCGGGCCGGAGCTCGAGATCTCAATTGCCTATCATGTGCTTGAAAAGGTCCCACAGTTCCTCGGCCACACCTCCTGGCTGACAACAAGGCTACTTGGATTGATTATATTCTTTGTATTGTACAGAAAATGAAATTCCATATATGAATATATCATAGGGCGAAGTTGATGTACACCTTAAACGATTTATACCTTGCTTGGAATTGCGAGATGTTCCAAGCGACGTTCTGTTATATTTTTAAGTCCCATATTGAGTGATCTTCTCTGTTGTTTGCATCATTTGTTGACTAATTGCTGTTTGAACCTTTGAAAATGAAGAATTGAGCAGGGATATCCATTTGATCCATGGAGTAGTGGGTTCTGATCTAAGCAGTACTTATGGGAATTCCATTGTTTTGCAGGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGTAAGTTTATTTGTCTCTACACTGCTTGAGGATATTATTTTGTTTTCCGTTGTGAACAAATTAGCACTGTTTCATGCAGGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCATACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGGGATGGTTTGTCTCAGATTATCGTTTTTGCCCCCTTTGTAGAAATTGTTTGGTTGAGTTTGCTTTCCTGTGATCTGATTATATTTAAGAAGTGAGCAGCATATCCATAAAAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCTAGGAAGTTTGAATTTATACAAGATTATCCATTGAACGTAGATTTTATAGAGCGGATGTGATATTACGTAACAGGTTATGAAAACTTAGTTATACTATATAGTTGAGATAAAAATGTACCATATTTCA

mRNA sequence

ACCCCCGCCAAGTCGTCGTCTATCATTCGCCTCCACCAGTGGCAGTTTCCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCCCCCAAATTCAAGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCATACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGGGATGGTTTGTCTCAGATTATCGTTTTTGCCCCCTTTGTAGAAATTGTTTGGTTGAGTTTGCTTTCCTGTGATCTGATTATATTTAAGAAGTGAGCAGCATATCCATAAAAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCTAGGAAGTTTGAATTTATACAAGATTATCCATTGAACGTAGATTTTATAGAGCGGATGTGATATTACGTAACAGGTTATGAAAACTTAGTTATACTATATAGTTGAGATAAAAATGTACCATATTTCA

Coding sequence (CDS)

ATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACTTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCAATTGCTTTGGCAGCTTCGTCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGA

Protein sequence

MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of CmaCh02G013440 vs. TrEMBL
Match: A0A151R6Z0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040483 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-27
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKLIEKQKYFQ+IHKHTYLKGP DK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEPPFRPREKLIEKQKYFQNIHKHTYLKGPYDKITSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. TrEMBL
Match: A0A0L9UNF9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g170700 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-27
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKLIEKQK+FQS+HKHTYLKGP DK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEPPFRPREKLIEKQKHFQSVHKHTYLKGPYDKITSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. TrEMBL
Match: A0A0B2S386_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_008206 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-27
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKL EKQKYFQSIH+HTYLKGPMDK+TSVAIP+ALAA+S+Y+IGRGIYNMS
Sbjct: 1  MSESPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. TrEMBL
Match: A0A0A0KDL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151660 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 3  EEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 62
          E+PFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 5  EQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 64

Query: 63 IGKKE 68
          IGKKE
Sbjct: 65 IGKKE 69

[Close]

BLAST of CmaCh02G013440 vs. TrEMBL
Match: I1LKU8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G187900 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 4.7e-27
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKL EKQKYFQSIH+HTYLKGPMDK+TSVAIP+ALAA+S+Y+IGRGIYNMS
Sbjct: 1  MSESPFRPREKLAEKQKYFQSIHRHTYLKGPMDKITSVAIPLALAATSIYMIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. TAIR10
Match: AT4G21105.1 (AT4G21105.1 cytochrome-c oxidases;electron carriers)

HSP 1 Score: 116.7 bits (291), Expect = 5.5e-27
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          ++E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TSVAIPIALAASSLY+IG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 68
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of CmaCh02G013440 vs. NCBI nr
Match: gi|659117461|ref|XP_008458612.1| (PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 8.0e-28
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 3  EEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 62
          E+PFRPREKL+EKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 5  EQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 64

Query: 63 IGKKE 68
          IGKKE
Sbjct: 65 IGKKE 69

[Close]

BLAST of CmaCh02G013440 vs. NCBI nr
Match: gi|1012326469|gb|KYP38269.1| (hypothetical protein KK1_040483 [Cajanus cajan])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-27
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKLIEKQKYFQ+IHKHTYLKGP DK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEPPFRPREKLIEKQKYFQNIHKHTYLKGPYDKITSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. NCBI nr
Match: gi|950959928|ref|XP_014497552.1| (PREDICTED: uncharacterized protein LOC106759053 [Vigna radiata var. radiata])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKLIEKQK+FQS+HKHTYLKGP DK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEPPFRPREKLIEKQKHFQSVHKHTYLKGPYDKITSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. NCBI nr
Match: gi|1012178631|ref|XP_015967567.1| (PREDICTED: uncharacterized protein LOC107491266 [Arachis duranensis])

HSP 1 Score: 128.3 bits (321), Expect = 5.2e-27
Identity = 60/67 (89.55%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60
          MSE PFRPREKL+EKQKYFQ+IHKHTYLKGP DK+TSVAIPIALAA+SLY+IGRGIYNMS
Sbjct: 1  MSEPPFRPREKLVEKQKYFQNIHKHTYLKGPYDKITSVAIPIALAATSLYMIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmaCh02G013440 vs. NCBI nr
Match: gi|449456118|ref|XP_004145797.1| (PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 3  EEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 62
          E+PFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYNMSHG
Sbjct: 5  EQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMSHG 64

Query: 63 IGKKE 68
          IGKKE
Sbjct: 65 IGKKE 69

The following BLAST results are available for this feature:

BLAST of CmaCh02G013440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G013440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151R6Z0_CAJCA	1.2e-27	92.54	Uncharacterized protein OS=Cajanus cajan GN=KK1_040483 PE=4 SV=1	[more]
A0A0L9UNF9_PHAAN	2.8e-27	91.04	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g170700 PE=4 SV=1	[more]
A0A0B2S386_GLYSO	4.7e-27	88.06	Uncharacterized protein OS=Glycine soja GN=glysoja_008206 PE=4 SV=1	[more]
A0A0A0KDL3_CUCSA	4.7e-27	93.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G151660 PE=4 SV=1	[more]
I1LKU8_SOYBN	4.7e-27	88.06	Uncharacterized protein OS=Glycine max GN=GLYMA_11G187900 PE=4 SV=1	[more]

BLAST of CmaCh02G013440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21105.1	5.5e-27	82.09	cytochrome-c oxidases;electron carriers	[more]

BLAST of CmaCh02G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117461\|ref\|XP_008458612.1\|	8.0e-28	95.38	PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo]	[more]
gi\|1012326469\|gb\|KYP38269.1\|	1.8e-27	92.54	hypothetical protein KK1_040483 [Cajanus cajan]	[more]
gi\|950959928\|ref\|XP_014497552.1\|	4.0e-27	91.04	PREDICTED: uncharacterized protein LOC106759053 [Vigna radiata var. radiata]	[more]
gi\|1012178631\|ref\|XP_015967567.1\|	5.2e-27	89.55	PREDICTED: uncharacterized protein LOC107491266 [Arachis duranensis]	[more]
gi\|449456118\|ref\|XP_004145797.1\|	6.8e-27	93.85	PREDICTED: uncharacterized protein LOC101208002 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005746	mitochondrial respiratory chain
cellular_component	GO:0045277	respiratory chain complex IV
molecular_function	GO:0004129	cytochrome-c oxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G013440.1	CmaCh02G013440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35308	FAMILY NOT NAMED	coord: 1..67 score: 5.6
None	No IPR available	PANTHER	PTHR35308:SF1	SUBFAMILY NOT NAMED	coord: 1..67 score: 5.6
None	No IPR available	PFAM	PF02238	COX7a	coord: 10..62 score: 4.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G013440	Cucumber (Chinese Long) v3	cmacucB0758
CmaCh02G013440	Cucumber (Chinese Long) v3	cmacucB0694
CmaCh02G013440	Cucumber (Chinese Long) v3	cmacucB0753
CmaCh02G013440	Watermelon (97103) v2	cmawmbB602
CmaCh02G013440	Watermelon (97103) v2	cmawmbB629
CmaCh02G013440	Watermelon (97103) v2	cmawmbB647
CmaCh02G013440	Wax gourd	cmawgoB0747
CmaCh02G013440	Cucurbita maxima (Rimu)	cmacmaB230
CmaCh02G013440	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh02G013440	Cucurbita maxima (Rimu)	cmacmaB507
CmaCh02G013440	Cucumber (Gy14) v1	cgycmaB0152
CmaCh02G013440	Cucumber (Gy14) v1	cgycmaB1067
CmaCh02G013440	Cucurbita moschata (Rifu)	cmacmoB607
CmaCh02G013440	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G013440	Cucurbita moschata (Rifu)	cmacmoB628
CmaCh02G013440	Wild cucumber (PI 183967)	cmacpiB636
CmaCh02G013440	Cucumber (Chinese Long) v2	cmacuB579
CmaCh02G013440	Cucumber (Chinese Long) v2	cmacuB631
CmaCh02G013440	Cucumber (Chinese Long) v2	cmacuB641
CmaCh02G013440	Melon (DHL92) v3.5.1	cmameB548
CmaCh02G013440	Melon (DHL92) v3.5.1	cmameB585
CmaCh02G013440	Watermelon (Charleston Gray)	cmawcgB541
CmaCh02G013440	Watermelon (Charleston Gray)	cmawcgB558
CmaCh02G013440	Watermelon (97103) v1	cmawmB582
CmaCh02G013440	Watermelon (97103) v1	cmawmB592
CmaCh02G013440	Cucurbita pepo (Zucchini)	cmacpeB627
CmaCh02G013440	Cucurbita pepo (Zucchini)	cmacpeB634
CmaCh02G013440	Cucurbita pepo (Zucchini)	cmacpeB644
CmaCh02G013440	Bottle gourd (USVL1VR-Ls)	cmalsiB540
CmaCh02G013440	Bottle gourd (USVL1VR-Ls)	cmalsiB564
CmaCh02G013440	Cucumber (Gy14) v2	cgybcmaB123
CmaCh02G013440	Cucumber (Gy14) v2	cgybcmaB820
CmaCh02G013440	Cucumber (Gy14) v2	cgybcmaB829
CmaCh02G013440	Melon (DHL92) v3.6.1	cmamedB626
CmaCh02G013440	Melon (DHL92) v3.6.1	cmamedB668
CmaCh02G013440	Silver-seed gourd	carcmaB0576
CmaCh02G013440	Silver-seed gourd	carcmaB1268