CmaCh02G012870 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G012870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr02 : 7552537 .. 7552863 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGAAGAACATGGAATTTCACAGTGGGAAGCAGTGCAAATCTCCTTTTGGACATTCACATCCAAATTCTACTTTAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGCGATATCGGTTTTGATCAAGATGATCTAATAGAGAAGAAAAACAAGCAACGAACACAAAGCGAAGATGAATTTGTACCTGCGACGGAAAGATCCTTCCACTTCCTCATCGGCTCAAAATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGA

mRNA sequence

ATGCAGGTGAAGAACATGGAATTTCACAGTGGGAAGCAGTGCAAATCTCCTTTTGGACATTCACATCCAAATTCTACTTTAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGCGATATCGGTTTTGATCAAGATGATCTAATAGAGAAGAAAAACAAGCAACGAACACAAAGCGAAGATGAATTTGTACCTGCGACGGAAAGATCCTTCCACTTCCTCATCGGCTCAAAATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGA

Coding sequence (CDS)

ATGCAGGTGAAGAACATGGAATTTCACAGTGGGAAGCAGTGCAAATCTCCTTTTGGACATTCACATCCAAATTCTACTTTAGACGAGTTTGAATTCAAAGCTAGCAGCCGTTTCAATCTCAGCGATATCGGTTTTGATCAAGATGATCTAATAGAGAAGAAAAACAAGCAACGAACACAAAGCGAAGATGAATTTGTACCTGCGACGGAAAGATCCTTCCACTTCCTCATCGGCTCAAAATTCCGCCGCCTCGCATTGAAAATCGCAGCGGCAAAAGCTCCACCGGTCTCGGCGCTCAAAATCAAATTCGCTCACCAGAATCTGTGA

Protein sequence

MQVKNMEFHSGKQCKSPFGHSHPNSTLDEFEFKASSRFNLSDIGFDQDDLIEKKNKQRTQSEDEFVPATERSFHFLIGSKFRRLALKIAAAKAPPVSALKIKFAHQNL

Homology

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BLAST of CmaCh02G012870 vs. TrEMBL
Match: A0A0A0KEI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429640 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.6e-19
Identity = 63/131 (48.09%), Postives = 75/131 (57.25%), Query Frame = 1


Query: 1   MQVKNMEFHS----GKQCKSPFGHSHPNSTLDEFEFKASSRFNLSDIGFDQDDLIEKKNK 60
           MQ+KN+EFHS     KQCKSP GHS PNSTLDEFEF  S RFNL+D+ FD +D  E++NK
Sbjct: 3   MQIKNIEFHSVPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRKEQQNK 62

Query: 61  QRTQSEDEFVPATERSFHFLIGSKFRRL--ALKI-----------------AAAKAPPVS 109
           +R Q EDE +P    +       K   L   LKI                  ++   PVS
Sbjct: 63  KRMQFEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENRSGKSSTVSSPRSPVS 122

[Close]

BLAST of CmaCh02G012870 vs. NCBI nr
Match: gi|700192881|gb|KGN48085.1| (hypothetical protein Csa_6G429640 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 63/131 (48.09%), Postives = 75/131 (57.25%), Query Frame = 1


Query: 1   MQVKNMEFHS----GKQCKSPFGHSHPNSTLDEFEFKASSRFNLSDIGFDQDDLIEKKNK 60
           MQ+KN+EFHS     KQCKSP GHS PNSTLDEFEF  S RFNL+D+ FD +D  E++NK
Sbjct: 3   MQIKNIEFHSVPSSPKQCKSPIGHSRPNSTLDEFEFGTSCRFNLNDVDFDLEDRKEQQNK 62

Query: 61  QRTQSEDEFVPATERSFHFLIGSKFRRL--ALKI-----------------AAAKAPPVS 109
           +R Q EDE +P    +       K   L   LKI                  ++   PVS
Sbjct: 63  KRMQFEDESLPVMAFADELFSDGKVLPLPPRLKIPPSHERLNENRSGKSSTVSSPRSPVS 122

The following BLAST results are available for this feature:

BLAST of CmaCh02G012870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEI4_CUCSA	7.6e-19	48.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G429640 PE=4 SV=1	[more]

BLAST of CmaCh02G012870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192881\|gb\|KGN48085.1\|	1.1e-18	48.09	hypothetical protein Csa_6G429640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012870.1	CmaCh02G012870.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G012870	Cucsa.086880	Cucumber (Gy14) v1	cgycmaB0167
CmaCh02G012870	Cla008587	Watermelon (97103) v1	cmawmB592
CmaCh02G012870	Csa6G429640	Cucumber (Chinese Long) v2	cmacuB630
CmaCh02G012870	MELO3C014550	Melon (DHL92) v3.5.1	cmameB572
CmaCh02G012870	ClCG02G022730	Watermelon (Charleston Gray)	cmawcgB541
CmaCh02G012870	CSPI06G23730	Wild cucumber (PI 183967)	cmacpiB635
CmaCh02G012870	CmoCh20G001290	Cucurbita moschata (Rifu)	cmacmoB607
CmaCh02G012870	Lsi10G011050	Bottle gourd (USVL1VR-Ls)	cmalsiB540
CmaCh02G012870	Cp4.1LG16g08480	Cucurbita pepo (Zucchini)	cmacpeB627
CmaCh02G012870	Cp4.1LG05g04660	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G012870	MELO3C014550.2	Melon (DHL92) v3.6.1	cmamedB654
CmaCh02G012870	CsaV3_6G038850	Cucumber (Chinese Long) v3	cmacucB0752
CmaCh02G012870	Cla97C02G048820	Watermelon (97103) v2	cmawmbB629

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G012870	CmaCh20G001200	Cucurbita maxima (Rimu)	cmacmaB470

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G012870	Cucurbita pepo (Zucchini)	cmacpeB632
CmaCh02G012870	Cucurbita pepo (Zucchini)	cmacpeB643
CmaCh02G012870	Bottle gourd (USVL1VR-Ls)	cmalsiB574
CmaCh02G012870	Cucumber (Gy14) v2	cgybcmaB120
CmaCh02G012870	Cucumber (Gy14) v2	cgybcmaB819
CmaCh02G012870	Silver-seed gourd	carcmaB0733
CmaCh02G012870	Silver-seed gourd	carcmaB1268
CmaCh02G012870	Cucumber (Chinese Long) v3	cmacucB0691
CmaCh02G012870	Wax gourd	cmawgoB0757
CmaCh02G012870	Cucurbita maxima (Rimu)	cmacmaB112
CmaCh02G012870	Cucurbita maxima (Rimu)	cmacmaB159
CmaCh02G012870	Cucurbita moschata (Rifu)	cmacmoB573
CmaCh02G012870	Cucurbita moschata (Rifu)	cmacmoB574
CmaCh02G012870	Cucurbita moschata (Rifu)	cmacmoB619