CmaCh02G012570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G012570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	Cma_Chr02 : 7378165 .. 7379535 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGCGTTGGAAGAGATGAGTTCGATCAGATCGTTCGTTTCCAGAGAAGAAGCGGGTTATCGGTGGCAAGGATTTGTGTTCATCGTCGTCAGCTTCGTTTTCCTTCTGCTATTTCTCTATGCCGCGATCATTTCTAAGCTTCTTTCGCCTTCGGACAATGCCTTCTTATCTGCTATTCAGAACGACTGGTAAGTTTTTCTGTTGATTTTGGAGAATTCCTTTATTTGTGATGTGGAAACATGGAATTTGGAAGGCTTTGAAATGATTCCGGTGTTCAGTTAGAAAAAACAGGATTCGAAATTCAATCTTAATCTCATTTTAATTGGTTGAATTGAAGAAAACAAATTGAACAAAACTTGATCTGCGAGAACGCGATTGAGAGATGAAGGATTGTGGAAGATTGAGAGGTAGATAGGAACGAGTATAAATGGTAGGGAGAAGAAAGAAAAAGGTGGGGGATGGTAGTGGATGAAGAACGGATACGTCTTTTAGGTCATTCATATGATGTTATACATATTAGGAAATGAGTATGTATGAATCTGAATGTTAGCATGCCTTTGAAGCAAGCCAATTACTTGTTCATAGAGTATTTTAATGAAATTTGATTTGGTGATAGTGCCTTTAATCTCTTGAGAAGATTGCTTAAATCAAAACTATTACAATTTCAAGGGAAGTAATATGATAACAACGAGACCTCTATTTGTAATGTATTTCCTGTTCTTTACTAGGTATTACTGTCTCCTGGTGCCCTTGACATTACCTATCCTCTATGCTGCCGTTTATTTCCATTGGCTCAGCATGAAACTATTCAAGCATGCTTGAAAGTGGTCAGCTAATGAACTATCCAACCAAGTTGAGTGTCTCAGTTTGATTAAATTACAATGTGATGTGTTCCGAGCTTCCGTAGCCGAGATGATCGAGGATGTACTTGTATTCTACCGGAGGCTGTATATCGTGCAAGAGAATTCGATATCGGCGGGTCTTATCATAGTAAAATCTGTTCATTTTGGTTGAATGATGAGAACATGAGATATTCAAACTAAGCTGAAAGGCCAAAGAGTGGTTTAAACTCACATTGAATGACTTGGTGAATGCATCTAAGCACAAGCTTTATGACCTAAGGTGAGCATCTCCAAAGACAATCTAGGGAAGACCAACTTGGGTTGTGGTTGGCGAGGAGATACTTGATTCTTGAAAATTGCTTCATTGTTGGACATGCCACTTTTGGTAATGCTTTGATATATACCAAAATTTGTCCATTTTGTTATCAAAGGTGCTCGAGTCTAGAGCTCTACCACCGTTTTTTTTTTTAATTGAACGAAAATTATAGTTGATCCATTTTTAAAGTTAAATAATATATGAACGAAC

mRNA sequence

ATGTGGGCGTTGGAAGAGATGAGTTCGATCAGATCGTTCGTTTCCAGAGAAGAAGCGGGTTATCGGTGGCAAGGATTTGTGTTCATCGTCGTCAGCTTCGTTTTCCTTCTGCTATTTCTCTATGCCGCGATCATTTCTAAGCTTCTTTCGCCTTCGGACAATGCCTTCTTATCTGCTATTCAGAACGACTGGTATTACTGTCTCCTGGTGCCCTTGACATTACCTATCCTCTATGCTGCCGTTTATTTCCATTGGCTCAGCATGAAACTATTCAAGCATGCTTGAAAGTGGTCAGCTAATGAACTATCCAACCAAGTTGAGTGTCTCAGTTTGATTAAATTACAATGTGATGTGTTCCGAGCTTCCGTAGCCGAGATGATCGAGGATGTACTTGTATTCTACCGGAGGCTGTATATCGTGCAAGAGAATTCGATATCGGCGGGTCTTATCATAGTAAAATCTGTTCATTTTGGTTGAATGATGAGAACATGAGATATTCAAACTAAGCTGAAAGGCCAAAGAGTGGTTTAAACTCACATTGAATGACTTGGTGAATGCATCTAAGCACAAGCTTTATGACCTAAGGTGAGCATCTCCAAAGACAATCTAGGGAAGACCAACTTGGGTTGTGGTTGGCGAGGAGATACTTGATTCTTGAAAATTGCTTCATTGTTGGACATGCCACTTTTGGTAATGCTTTGATATATACCAAAATTTGTCCATTTTGTTATCAAAGGTGCTCGAGTCTAGAGCTCTACCACCGTTTTTTTTTTTAATTGAACGAAAATTATAGTTGATCCATTTTTAAAGTTAAATAATATATGAACGAAC

Coding sequence (CDS)

ATGTGGGCGTTGGAAGAGATGAGTTCGATCAGATCGTTCGTTTCCAGAGAAGAAGCGGGTTATCGGTGGCAAGGATTTGTGTTCATCGTCGTCAGCTTCGTTTTCCTTCTGCTATTTCTCTATGCCGCGATCATTTCTAAGCTTCTTTCGCCTTCGGACAATGCCTTCTTATCTGCTATTCAGAACGACTGGTATTACTGTCTCCTGGTGCCCTTGACATTACCTATCCTCTATGCTGCCGTTTATTTCCATTGGCTCAGCATGAAACTATTCAAGCATGCTTGA

Protein sequence

MWALEEMSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYYCLLVPLTLPILYAAVYFHWLSMKLFKHA

Homology

[Close]

BLAST of CmaCh02G012570 vs. TrEMBL
Match: E5GBS7_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-31
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 7  MSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYY 66
          MSSIRS + REEA  R QGF F+V+SF  LL+FLYAA+ISKLL PS+NAFLSAIQNDWYY
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

Query: 67 CLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          CLLVPLTLPILY AVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of CmaCh02G012570 vs. TrEMBL
Match: A0A0A0KIB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434405 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 7  MSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYY 66
          MSSIRS + REE   R QG +F+VVSF+FLL+FLYAA ISKLL PS+NAFLSAIQNDW+Y
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWHY 60

Query: 67 CLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          CLLVPLTLPILY AVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of CmaCh02G012570 vs. TrEMBL
Match: A0A022PQH2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017254mg PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.1e-21
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 7  MSSIRSFV-SREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWY 66
          M ++R FV S     + W   +F   SFVF   FLYAA++SKLL PSDN+ + AIQNDWY
Sbjct: 1  MLALREFVDSNGRIFWGWFFLIFGSFSFVF---FLYAAVVSKLLPPSDNSVIQAIQNDWY 60

Query: 67 YCLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          YC LVPLTLPIL+ AVYFHWLSMKLFKHA
Sbjct: 61 YCFLVPLTLPILFVAVYFHWLSMKLFKHA 86

[Close]

BLAST of CmaCh02G012570 vs. TrEMBL
Match: M5XG74_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014266mg PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-18
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 25 GFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYYCLLVPLTLPILYAAVYFH 84
          G+ FI    VF L FLYA ++SKLL PSDN  LSAIQND YYC LVPLTLP+L  AVYFH
Sbjct: 8  GWFFIASGSVFFLGFLYATVLSKLLPPSDNIILSAIQNDRYYCFLVPLTLPVLVVAVYFH 67

Query: 85 WLSMKLFKHA 95
          WLSMKLFKHA
Sbjct: 68 WLSMKLFKHA 77

[Close]

BLAST of CmaCh02G012570 vs. TrEMBL
Match: A0A059ABM5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00742 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 7  MSSIRSFVSRE-EAGYRW-QGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDW 66
          MSS  S  SR  ++G R  +G +F+    V  + F YAA++SKLL PSDNA ++A+QND 
Sbjct: 1  MSSSASASSRSSDSGARTLRGSLFVAAGCVCFVAFAYAAVVSKLLPPSDNAVVAAVQNDR 60

Query: 67 YYCLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          YYC LVPLTLPIL  AVYFHWLSMKLFKHA
Sbjct: 61 YYCFLVPLTLPILVVAVYFHWLSMKLFKHA 90

[Close]

BLAST of CmaCh02G012570 vs. NCBI nr
Match: gi|307136070|gb|ADN33919.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-31
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 7  MSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYY 66
          MSSIRS + REEA  R QGF F+V+SF  LL+FLYAA+ISKLL PS+NAFLSAIQNDWYY
Sbjct: 1  MSSIRSLIPREEAVGRRQGFFFVVLSFSLLLIFLYAAVISKLLPPSNNAFLSAIQNDWYY 60

Query: 67 CLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          CLLVPLTLPILY AVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of CmaCh02G012570 vs. NCBI nr
Match: gi|700192918|gb|KGN48122.1| (hypothetical protein Csa_6G434405 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-30
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 7  MSSIRSFVSREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYY 66
          MSSIRS + REE   R QG +F+VVSF+FLL+FLYAA ISKLL PS+NAFLSAIQNDW+Y
Sbjct: 1  MSSIRSLIPREETVGRRQGVLFVVVSFLFLLIFLYAAFISKLLPPSNNAFLSAIQNDWHY 60

Query: 67 CLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          CLLVPLTLPILY AVYFHWLSMKLFKHA
Sbjct: 61 CLLVPLTLPILYVAVYFHWLSMKLFKHA 88

[Close]

BLAST of CmaCh02G012570 vs. NCBI nr
Match: gi|604297506|gb|EYU17719.1| (hypothetical protein MIMGU_mgv1a017254mg [Erythranthe guttata])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1


Query: 7  MSSIRSFV-SREEAGYRWQGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWY 66
          M ++R FV S     + W   +F   SFVF   FLYAA++SKLL PSDN+ + AIQNDWY
Sbjct: 1  MLALREFVDSNGRIFWGWFFLIFGSFSFVF---FLYAAVVSKLLPPSDNSVIQAIQNDWY 60

Query: 67 YCLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          YC LVPLTLPIL+ AVYFHWLSMKLFKHA
Sbjct: 61 YCFLVPLTLPILFVAVYFHWLSMKLFKHA 86

[Close]

BLAST of CmaCh02G012570 vs. NCBI nr
Match: gi|596217088|ref|XP_007223933.1| (hypothetical protein PRUPE_ppa014266mg [Prunus persica])

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-18
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 25 GFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDWYYCLLVPLTLPILYAAVYFH 84
          G+ FI    VF L FLYA ++SKLL PSDN  LSAIQND YYC LVPLTLP+L  AVYFH
Sbjct: 8  GWFFIASGSVFFLGFLYATVLSKLLPPSDNIILSAIQNDRYYCFLVPLTLPVLVVAVYFH 67

Query: 85 WLSMKLFKHA 95
          WLSMKLFKHA
Sbjct: 68 WLSMKLFKHA 77

[Close]

BLAST of CmaCh02G012570 vs. NCBI nr
Match: gi|629084787|gb|KCW51144.1| (hypothetical protein EUGRSUZ_J00742 [Eucalyptus grandis])

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 7  MSSIRSFVSRE-EAGYRW-QGFVFIVVSFVFLLLFLYAAIISKLLSPSDNAFLSAIQNDW 66
          MSS  S  SR  ++G R  +G +F+    V  + F YAA++SKLL PSDNA ++A+QND 
Sbjct: 1  MSSSASASSRSSDSGARTLRGSLFVAAGCVCFVAFAYAAVVSKLLPPSDNAVVAAVQNDR 60

Query: 67 YYCLLVPLTLPILYAAVYFHWLSMKLFKHA 95
          YYC LVPLTLPIL  AVYFHWLSMKLFKHA
Sbjct: 61 YYCFLVPLTLPILVVAVYFHWLSMKLFKHA 90

The following BLAST results are available for this feature:

BLAST of CmaCh02G012570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012570 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBS7_CUCME	3.4e-31	81.82	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KIB0_CUCSA	1.3e-30	80.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434405 PE=4 SV=1	[more]
A0A022PQH2_ERYGU	7.1e-21	64.04	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017254mg PE=4 SV=1	[more]
M5XG74_PRUPE	2.5e-18	72.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014266mg PE=4 SV=1	[more]
A0A059ABM5_EUCGR	3.3e-18	61.11	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00742 PE=4 SV=1	[more]

BLAST of CmaCh02G012570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136070\|gb\|ADN33919.1\|	4.9e-31	81.82	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192918\|gb\|KGN48122.1\|	1.9e-30	80.68	hypothetical protein Csa_6G434405 [Cucumis sativus]	[more]
gi\|604297506\|gb\|EYU17719.1\|	1.0e-20	64.04	hypothetical protein MIMGU_mgv1a017254mg [Erythranthe guttata]	[more]
gi\|596217088\|ref\|XP_007223933.1\|	3.6e-18	72.86	hypothetical protein PRUPE_ppa014266mg [Prunus persica]	[more]
gi\|629084787\|gb\|KCW51144.1\|	4.7e-18	61.11	hypothetical protein EUGRSUZ_J00742 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012570.1	CmaCh02G012570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36485	FAMILY NOT NAMED	coord: 1..94 score: 2.6
None	No IPR available	PANTHER	PTHR36485:SF1	SUBFAMILY NOT NAMED	coord: 1..94 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G012570	MELO3C014581	Melon (DHL92) v3.5.1	cmameB572
CmaCh02G012570	CmoCh02G012980	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G012570	Cp4.1LG05g04810	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G012570	MELO3C014581.2	Melon (DHL92) v3.6.1	cmamedB654
CmaCh02G012570	Carg02702	Silver-seed gourd	carcmaB1268

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G012570	Cucurbita pepo (Zucchini)	cmacpeB627
CmaCh02G012570	Cucurbita pepo (Zucchini)	cmacpeB632
CmaCh02G012570	Cucurbita pepo (Zucchini)	cmacpeB643
CmaCh02G012570	Bottle gourd (USVL1VR-Ls)	cmalsiB540
CmaCh02G012570	Cucumber (Gy14) v2	cgybcmaB120
CmaCh02G012570	Cucumber (Gy14) v2	cgybcmaB819
CmaCh02G012570	Silver-seed gourd	carcmaB0653
CmaCh02G012570	Silver-seed gourd	carcmaB0733
CmaCh02G012570	Cucumber (Chinese Long) v3	cmacucB0691
CmaCh02G012570	Cucumber (Chinese Long) v3	cmacucB0752
CmaCh02G012570	Watermelon (97103) v2	cmawmbB629
CmaCh02G012570	Wax gourd	cmawgoB0757
CmaCh02G012570	Cucurbita maxima (Rimu)	cmacmaB112
CmaCh02G012570	Cucurbita maxima (Rimu)	cmacmaB159
CmaCh02G012570	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh02G012570	Cucumber (Gy14) v1	cgycmaB0327
CmaCh02G012570	Cucurbita moschata (Rifu)	cmacmoB573
CmaCh02G012570	Cucurbita moschata (Rifu)	cmacmoB574
CmaCh02G012570	Cucurbita moschata (Rifu)	cmacmoB607
CmaCh02G012570	Wild cucumber (PI 183967)	cmacpiB583
CmaCh02G012570	Wild cucumber (PI 183967)	cmacpiB635
CmaCh02G012570	Cucumber (Chinese Long) v2	cmacuB630
CmaCh02G012570	Watermelon (Charleston Gray)	cmawcgB541
CmaCh02G012570	Watermelon (Charleston Gray)	cmawcgB556
CmaCh02G012570	Watermelon (97103) v1	cmawmB592