CmaCh02G011820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G011820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SGNH hydrolase-type esterase superfamily protein, putative isoform 1
Location	Cma_Chr02 : 6999019 .. 6999309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTAGGTGTGGCAATGGAGCTCAGACGCGCAGCCTTATTCAAGTCTTTGTTCTTCACTGCTTATGTGACACTGATTGGTCTGTTGGGGCTAAGTCTTGCAGCTCGAGGATCCAGCATTACTGCCATGTACTTGTTGGGAGATTCTTCTGTGGATTGCGGCTTAAACGCTCTGTTTTACCCTCTTCTCCATCGCAATTTCTCCATTACTCCTTGCGACTCCGATGGCACCACCCTTCTTCCTCATCTCCTTGGTCAGTACTCTCTTGCTTGGCTATTCAGTCTTTGA

mRNA sequence

ATGACTTTAGGTGTGGCAATGGAGCTCAGACGCGCAGCCTTATTCAAGTCTTTGTTCTTCACTGCTTATGTGACACTGATTGGTCTGTTGGGGCTAAGTCTTGCAGCTCGAGGATCCAGCATTACTGCCATGTACTTGTTGGGAGATTCTTCTGTGGATTGCGGCTTAAACGCTCTGTTTTACCCTCTTCTCCATCGCAATTTCTCCATTACTCCTTGCGACTCCGATGGCACCACCCTTCTTCCTCATCTCCTTGGTCAGTACTCTCTTGCTTGGCTATTCAGTCTTTGA

Coding sequence (CDS)

ATGACTTTAGGTGTGGCAATGGAGCTCAGACGCGCAGCCTTATTCAAGTCTTTGTTCTTCACTGCTTATGTGACACTGATTGGTCTGTTGGGGCTAAGTCTTGCAGCTCGAGGATCCAGCATTACTGCCATGTACTTGTTGGGAGATTCTTCTGTGGATTGCGGCTTAAACGCTCTGTTTTACCCTCTTCTCCATCGCAATTTCTCCATTACTCCTTGCGACTCCGATGGCACCACCCTTCTTCCTCATCTCCTTGGTCAGTACTCTCTTGCTTGGCTATTCAGTCTTTGA

Protein sequence

MTLGVAMELRRAALFKSLFFTAYVTLIGLLGLSLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHLLGQYSLAWLFSL

Homology

[Close]

BLAST of CmaCh02G011820 vs. TrEMBL
Match: A0A0A0L1P2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269190 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-12
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 18 LFFTAYVTLIGLLGLSLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDG 77
          +FF   + LI     + AA+ S++ AM+LLGDSSVDCG N LFYPLLHRNFS+ PCD++ 
Sbjct: 10 IFFAHLILLID----TTAAQESNVNAMFLLGDSSVDCGFNTLFYPLLHRNFSLLPCDANA 69

Query: 78 T-TLLPHLL 86
          T +LLP LL
Sbjct: 70 TSSLLPFLL 74

[Close]

BLAST of CmaCh02G011820 vs. TrEMBL
Match: A0A061GUT9_THECC (SGNH hydrolase-type esterase superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_041131 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-10
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 30 LGLSLAARG-----SSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHL 88
          +G+++ A G     S+++AMY+LGDSSVDCG+NALFYP  H+N S+ PC+   + LLP+L
Sbjct: 14 MGMTIQAVGQENSRSNVSAMYVLGDSSVDCGINALFYPFFHQNLSLFPCNGSNSILLPYL 73

[Close]

BLAST of CmaCh02G011820 vs. TrEMBL
Match: M1CM91_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027399 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.8e-10
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 39 SSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHLLGQ 88
          SS+T+MY+LGDSSVDCG N  FYP+LH+N S+ PC+    TLLP LL +
Sbjct: 22 SSVTSMYILGDSSVDCGDNTPFYPILHQNLSLNPCNGSDQTLLPQLLAK 70

[Close]

BLAST of CmaCh02G011820 vs. TrEMBL
Match: A0A151U1I4_CAJCA (GDSL esterase/lipase At1g71250 family OS=Cajanus cajan GN=KK1_005792 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 38 GSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHLLGQYSLAW 93
          GS ++A+Y+LGDSSVDCG N LF+PLLH  FS+ PC+    TLLP LL +  + W
Sbjct: 41 GSHVSALYVLGDSSVDCGDNTLFFPLLHGRFSLYPCNGSDATLLPQLLAE-KIGW 94

[Close]

BLAST of CmaCh02G011820 vs. TrEMBL
Match: A0A0D2QPR7_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G128700 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-09
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 17 SLFFTAYVTLIGLLGLSLAARGSS--ITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCD 76
          +LF  A V++ G+  L++    +S  ++AMY+LGDSSVDCG N LFYP++H N S+ PC+
Sbjct: 25 ALFMVALVSM-GITNLAMVPEKTSRNVSAMYVLGDSSVDCGSNTLFYPIIHLNLSLLPCN 84

Query: 77 SDGTTLLPHLLGQ 88
             + LLP+LL +
Sbjct: 85 GSNSILLPYLLAK 96

[Close]

BLAST of CmaCh02G011820 vs. NCBI nr
Match: gi|743792152|ref|XP_011043687.1| (PREDICTED: GDSL esterase/lipase At1g71250-like [Populus euphratica])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 33 SLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHLLGQ 88
          S+   GS ++A+YL+GDSSVDCG N+LFYPLL RN S+ PC+   +TLLPHLL Q
Sbjct: 45 SVMENGSHVSALYLMGDSSVDCGKNSLFYPLLRRNLSLLPCNGSDSTLLPHLLAQ 99

[Close]

BLAST of CmaCh02G011820 vs. NCBI nr
Match: gi|449463885|ref|XP_004149661.1| (PREDICTED: GDSL esterase/lipase At1g71250-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 18 LFFTAYVTLIGLLGLSLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDG 77
          +FF   + LI     + AA+ S++ AM+LLGDSSVDCG N LFYPLLHRNFS+ PCD++ 
Sbjct: 10 IFFAHLILLID----TTAAQESNVNAMFLLGDSSVDCGFNTLFYPLLHRNFSLLPCDANA 69

Query: 78 T-TLLPHLL 86
          T +LLP LL
Sbjct: 70 TSSLLPFLL 74

[Close]

BLAST of CmaCh02G011820 vs. NCBI nr
Match: gi|1009113637|ref|XP_015873255.1| (PREDICTED: GDSL esterase/lipase At1g71250-like [Ziziphus jujuba])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 37 RGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDGTTLLPHLLGQ 88
          RG  + AMY+LGDSSVDCG N LFYPLLHRN S+ PC+   ++LLPHLL +
Sbjct: 19 RGRDVPAMYVLGDSSVDCGDNTLFYPLLHRNLSLYPCNGSDSSLLPHLLAE 69

[Close]

BLAST of CmaCh02G011820 vs. NCBI nr
Match: gi|659097897|ref|XP_008449874.1| (PREDICTED: GDSL esterase/lipase At1g71250-like isoform X1 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 18 LFFTAYVTLIGLLGLSLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDG 77
          L F A++ L+   G   AA  S++TAM+LLGDSSVDCG N LFYP LHRNFS+ PCD++ 
Sbjct: 3  LIFIAHLILLINTG---AALESNVTAMFLLGDSSVDCGFNTLFYPRLHRNFSLLPCDTNA 62

Query: 78 T-TLLPHLL 86
          T +LLP LL
Sbjct: 63 TSSLLPFLL 68

[Close]

BLAST of CmaCh02G011820 vs. NCBI nr
Match: gi|659097899|ref|XP_008449875.1| (PREDICTED: GDSL esterase/lipase At1g71250-like isoform X2 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 18 LFFTAYVTLIGLLGLSLAARGSSITAMYLLGDSSVDCGLNALFYPLLHRNFSITPCDSDG 77
          L F A++ L+   G   AA  S++TAM+LLGDSSVDCG N LFYP LHRNFS+ PCD++ 
Sbjct: 3  LIFIAHLILLINTG---AALESNVTAMFLLGDSSVDCGFNTLFYPRLHRNFSLLPCDTNA 62

Query: 78 T-TLLPHLL 86
          T +LLP LL
Sbjct: 63 TSSLLPFLL 68

The following BLAST results are available for this feature:

BLAST of CmaCh02G011820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P2_CUCSA	8.0e-12	57.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269190 PE=4 SV=1	[more]
A0A061GUT9_THECC	2.6e-10	50.79	SGNH hydrolase-type esterase superfamily protein, putative isoform 1 OS=Theobrom...	[more]
M1CM91_SOLTU	9.8e-10	61.22	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027399 PE=4 SV=1	[more]
A0A151U1I4_CAJCA	1.3e-09	56.36	GDSL esterase/lipase At1g71250 family OS=Cajanus cajan GN=KK1_005792 PE=4 SV=1	[more]
A0A0D2QPR7_GOSRA	1.7e-09	46.58	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G128700 PE=...	[more]

BLAST of CmaCh02G011820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh02G011820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|743792152\|ref\|XP_011043687.1\|	6.8e-12	61.82	PREDICTED: GDSL esterase/lipase At1g71250-like [Populus euphratica]	[more]
gi\|449463885\|ref\|XP_004149661.1\|	1.2e-11	57.97	PREDICTED: GDSL esterase/lipase At1g71250-like [Cucumis sativus]	[more]
gi\|1009113637\|ref\|XP_015873255.1\|	1.5e-11	64.71	PREDICTED: GDSL esterase/lipase At1g71250-like [Ziziphus jujuba]	[more]
gi\|659097897\|ref\|XP_008449874.1\|	4.4e-11	59.42	PREDICTED: GDSL esterase/lipase At1g71250-like isoform X1 [Cucumis melo]	[more]
gi\|659097899\|ref\|XP_008449875.1\|	4.4e-11	59.42	PREDICTED: GDSL esterase/lipase At1g71250-like isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G011820.1	CmaCh02G011820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G011820	Cucumber (Gy14) v2	cgybcmaB527
CmaCh02G011820	Melon (DHL92) v3.6.1	cmamedB654
CmaCh02G011820	Cucumber (Chinese Long) v3	cmacucB0728
CmaCh02G011820	Watermelon (97103) v2	cmawmbB629
CmaCh02G011820	Wax gourd	cmawgoB0757
CmaCh02G011820	Cucurbita maxima (Rimu)	cmacmaB112
CmaCh02G011820	Cucurbita maxima (Rimu)	cmacmaB470
CmaCh02G011820	Cucumber (Gy14) v1	cgycmaB0424
CmaCh02G011820	Cucurbita moschata (Rifu)	cmacmoB573
CmaCh02G011820	Cucurbita moschata (Rifu)	cmacmoB607
CmaCh02G011820	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G011820	Wild cucumber (PI 183967)	cmacpiB612
CmaCh02G011820	Cucumber (Chinese Long) v2	cmacuB605
CmaCh02G011820	Melon (DHL92) v3.5.1	cmameB572
CmaCh02G011820	Watermelon (Charleston Gray)	cmawcgB541
CmaCh02G011820	Watermelon (97103) v1	cmawmB592
CmaCh02G011820	Cucurbita pepo (Zucchini)	cmacpeB627
CmaCh02G011820	Cucurbita pepo (Zucchini)	cmacpeB632
CmaCh02G011820	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G011820	Bottle gourd (USVL1VR-Ls)	cmalsiB540