CmaCh02G009990 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G009990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 5949750 .. 5950175 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCAATAAGAAGCATTTGATACCTCTGGTAATCGTCTTATATCTTCTGCTTTTCCTTTCATCCTATGGGGCAGCAAGGTTCTTCATTCCAAATGGTATTTTTCCTTTTTTTTTTTTGTTTTTTTTTTTCCGACCACAATCGATGAAGAGTTTATAAGATCCGAGCTTTTTCAGGAAATATGAACACCCTCGAGACGAAGCCAATTACGTTGGGACGAATTATGCGACGAGATTTAGCATACGGAGGAAATTATAGTCCTGGAAAACAGTGATATGATTGTAAGAATACGAGCCACTAAAAGAATATAGTGAATAAGTTTTGATTTCTTTATTAAGTTGAATCGTGTTCGAGTGATTAAATTTGAATCTCGGTGTTTTAAGTGTTGTAGATTGAAATCTTTTTCATCTTATTTGTATTAAT

mRNA sequence

ATGGGTTCCAATAAGAAGCATTTGATACCTCTGGTAATCGTCTTATATCTTCTGCTTTTCCTTTCATCCTATGGGGCAGCAAGGTTCTTCATTCCAAATGGAAATATGAACACCCTCGAGACGAAGCCAATTACGTTGGGACGAATTATGCGACGAGATTTAGCATACGGAGGAAATTATAGTCCTGGAAAACAGTGATATGATTGTAAGAATACGAGCCACTAAAAGAATATAGTGAATAAGTTTTGATTTCTTTATTAAGTTGAATCGTGTTCGAGTGATTAAATTTGAATCTCGGTGTTTTAAGTGTTGTAGATTGAAATCTTTTTCATCTTATTTGTATTAAT

Coding sequence (CDS)

ATGGGTTCCAATAAGAAGCATTTGATACCTCTGGTAATCGTCTTATATCTTCTGCTTTTCCTTTCATCCTATGGGGCAGCAAGGTTCTTCATTCCAAATGGAAATATGAACACCCTCGAGACGAAGCCAATTACGTTGGGACGAATTATGCGACGAGATTTAGCATACGGAGGAAATTATAGTCCTGGAAAACAGTGA

Protein sequence

MGSNKKHLIPLVIVLYLLLFLSSYGAARFFIPNGNMNTLETKPITLGRIMRRDLAYGGNYSPGKQ
Homology
[Close]
BLAST of CmaCh02G009990 vs. TrEMBL
Match: A0A0A0KL54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.2e-12
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MGSNKKHLIPLVIVLYLLLFLSSYGAARFFIPNGNMNTLETKPITLG-RIMRRDLAYGGN 60
          M S KKHLI L  +LYL+LFLS+YGAAR    NG+M   E K I +G RI+RRDLA+GGN
Sbjct: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63

Query: 61 YSPGKQ 66
          Y PG Q
Sbjct: 64 YGPGVQ 69

[Close]
BLAST of CmaCh02G009990 vs. NCBI nr
Match: gi|700195181|gb|KGN50358.1| (hypothetical protein Csa_5G168950 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-12
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1 

Query: 1  MGSNKKHLIPLVIVLYLLLFLSSYGAARFFIPNGNMNTLETKPITLG-RIMRRDLAYGGN 60
          M S KKHLI L  +LYL+LFLS+YGAAR    NG+M   E K I +G RI+RRDLA+GGN
Sbjct: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63

Query: 61 YSPGKQ 66
          Y PG Q
Sbjct: 64 YGPGVQ 69

The following BLAST results are available for this feature:
BLAST of CmaCh02G009990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G009990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL54_CUCSA4.2e-1262.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168950 PE=4 SV=1[more]
BLAST of CmaCh02G009990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195181|gb|KGN50358.1|6.0e-1262.12hypothetical protein Csa_5G168950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G009990.1CmaCh02G009990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G009990Cp4.1LG05g07170Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G009990MELO3C033989.2Melon (DHL92) v3.6.1cmamedB610
CmaCh02G009990CsaV3_5G005250Cucumber (Chinese Long) v3cmacucB0731
CmaCh02G009990Carg08477Silver-seed gourdcarcmaB0999
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G009990Cucumber (Gy14) v2cgybcmaB394
CmaCh02G009990Cucumber (Gy14) v2cgybcmaB636
CmaCh02G009990Melon (DHL92) v3.6.1cmamedB661
CmaCh02G009990Silver-seed gourdcarcmaB1434
CmaCh02G009990Cucumber (Chinese Long) v3cmacucB0711
CmaCh02G009990Watermelon (97103) v2cmawmbB601
CmaCh02G009990Watermelon (97103) v2cmawmbB649
CmaCh02G009990Watermelon (97103) v2cmawmbB656
CmaCh02G009990Wax gourdcmawgoB0714
CmaCh02G009990Cucurbita maxima (Rimu)cmacmaB309
CmaCh02G009990Cucumber (Gy14) v1cgycmaB0351
CmaCh02G009990Cucurbita moschata (Rifu)cmacmoB580
CmaCh02G009990Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G009990Wild cucumber (PI 183967)cmacpiB601
CmaCh02G009990Wild cucumber (PI 183967)cmacpiB615
CmaCh02G009990Cucumber (Chinese Long) v2cmacuB596
CmaCh02G009990Cucumber (Chinese Long) v2cmacuB609
CmaCh02G009990Melon (DHL92) v3.5.1cmameB531
CmaCh02G009990Melon (DHL92) v3.5.1cmameB579
CmaCh02G009990Watermelon (Charleston Gray)cmawcgB519
CmaCh02G009990Watermelon (Charleston Gray)cmawcgB559
CmaCh02G009990Watermelon (97103) v1cmawmB564
CmaCh02G009990Watermelon (97103) v1cmawmB575
CmaCh02G009990Cucurbita pepo (Zucchini)cmacpeB603
CmaCh02G009990Bottle gourd (USVL1VR-Ls)cmalsiB531
CmaCh02G009990Bottle gourd (USVL1VR-Ls)cmalsiB590