CmaCh02G007560 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G007560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Thylakoid soluble phosphoprotein
Location	Cma_Chr02 : 4575169 .. 4575456 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

mRNA sequence

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

Coding sequence (CDS)

ATGGCCTCTCTTTCATTTGCATTCTCTCCGGCTGCCGGACGGGTGTTCGCCGCCACGGCGGCGAAGGGTGCCGGCGAAGGCAAGAAGGAAAAGGGTATTCTTGATTGGATCCTTGGAGGCATGGAGAAGGATCAGCTTCTGGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGCAAGAATGGCGGCGCCAACAACGGCGGCACTGTCCGCGGCGGCAAGAAGAATTCCGTCCAAGTCCCGCCGAAGAAAAACGGCGTCTTCGGCGGTCTCTTTGCCAAGAAAGACTAA

Protein sequence

MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKKD

Homology

[Close]

BLAST of CmaCh02G007560 vs. TrEMBL
Match: A0A0A0KC59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-33
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CmaCh02G007560 vs. TrEMBL
Match: A5B3D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028924 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-25
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1   MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
           MASL+ AF+PAAGRVFAATA K +G G  EKGILDWILGG++K DQ+LETDP+L+KVE K
Sbjct: 200 MASLTIAFAPAAGRVFAATAEKSSG-GSGEKGILDWILGGLQKEDQMLETDPILKKVEEK 259

Query: 61  NGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKK 95
           NGG+N      GG+KNSV VPPKK G FGGLFAKK
Sbjct: 260 NGGSN------GGRKNSVVVPPKKKGGFGGLFAKK 287

[Close]

BLAST of CmaCh02G007560 vs. TrEMBL
Match: F6GUT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06170 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.3e-25
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
          MASL+ AF+PAAGRVFAATA K +G G  EKGILDWILGG++K DQ+LETDP+L+KVE K
Sbjct: 1  MASLTIAFAPAAGRVFAATAEKSSG-GSGEKGILDWILGGLQKEDQMLETDPILKKVEEK 60

Query: 61 NGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKK 95
          NGG+N      GG+KNSV VPPKK G FGGLFAKK
Sbjct: 61 NGGSN------GGRKNSVVVPPKKKGGFGGLFAKK 88

[Close]

BLAST of CmaCh02G007560 vs. TrEMBL
Match: V7BQ66_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G065100g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 66/94 (70.21%), Postives = 74/94 (78.72%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
          MAS+  +FSPA GRVFAATAAKGAG  K+EKG LDWILGG++K DQLLETDP+L+KVE K
Sbjct: 1  MASIIMSFSPATGRVFAATAAKGAGGSKEEKGFLDWILGGLQKEDQLLETDPILKKVEEK 60

Query: 61 NGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAK 94
          NGG     T   G+KNSV VP KK G FGGLFAK
Sbjct: 61 NGGT----TTSNGRKNSVAVPQKKKGGFGGLFAK 90

[Close]

BLAST of CmaCh02G007560 vs. TrEMBL
Match: W9RP83_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022051 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MASLSFAFSPA-AGRVFAATAAKGAGEGKKEKGILDWILGGMEKD-QLLETDPVLQKVEG 60
          MASL+ AFSPA  GRVFAATAAKG G  K+EKG+LDWILGG++KD QLLETDP+L+KVE 
Sbjct: 1  MASLTMAFSPALTGRVFAATAAKGTGGSKEEKGLLDWILGGLQKDNQLLETDPILKKVEE 60

Query: 61 KNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAK 94
          KNGG        GG+KNSV VPPKK G FGGLFAK
Sbjct: 61 KNGGG-------GGRKNSVAVPPKKKGGFGGLFAK 88

[Close]

BLAST of CmaCh02G007560 vs. TAIR10
Match: AT3G47070.1 (AT3G47070.1 LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-12
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
          ++SL  +F+PA  RV+A +   G+G  K+EK  +D++LG M K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 NGGANNG-GTVRGGKKNS-VQVPPKKNGVFGGL 91
           G    G GTVRGGK ++   VP K  G FGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

[Close]

BLAST of CmaCh02G007560 vs. NCBI nr
Match: gi|449450924|ref|XP_004143212.1| (PREDICTED: uncharacterized protein LOC101205268 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of CmaCh02G007560 vs. NCBI nr
Match: gi|659128113|ref|XP_008464052.1| (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-32
Identity = 80/97 (82.47%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 96
          G + NG GTVR G+KNSVQ+PPKKN GVFGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of CmaCh02G007560 vs. NCBI nr
Match: gi|147856054|emb|CAN78614.1| (hypothetical protein VITISV_028924 [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 9.0e-25
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1   MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
           MASL+ AF+PAAGRVFAATA K +G G  EKGILDWILGG++K DQ+LETDP+L+KVE K
Sbjct: 200 MASLTIAFAPAAGRVFAATAEKSSG-GSGEKGILDWILGGLQKEDQMLETDPILKKVEEK 259

Query: 61  NGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKK 95
           NGG+N      GG+KNSV VPPKK G FGGLFAKK
Sbjct: 260 NGGSN------GGRKNSVVVPPKKKGGFGGLFAKK 287

[Close]

BLAST of CmaCh02G007560 vs. NCBI nr
Match: gi|225434658|ref|XP_002280087.1| (PREDICTED: uncharacterized protein LOC100265554 [Vitis vinifera])

HSP 1 Score: 121.3 bits (303), Expect = 9.0e-25
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1


Query: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEK-DQLLETDPVLQKVEGK 60
          MASL+ AF+PAAGRVFAATA K +G G  EKGILDWILGG++K DQ+LETDP+L+KVE K
Sbjct: 1  MASLTIAFAPAAGRVFAATAEKSSG-GSGEKGILDWILGGLQKEDQMLETDPILKKVEEK 60

Query: 61 NGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAKK 95
          NGG+N      GG+KNSV VPPKK G FGGLFAKK
Sbjct: 61 NGGSN------GGRKNSVVVPPKKKGGFGGLFAKK 88

[Close]

BLAST of CmaCh02G007560 vs. NCBI nr
Match: gi|703130641|ref|XP_010104673.1| (hypothetical protein L484_022051 [Morus notabilis])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MASLSFAFSPA-AGRVFAATAAKGAGEGKKEKGILDWILGGMEKD-QLLETDPVLQKVEG 60
          MASL+ AFSPA  GRVFAATAAKG G  K+EKG+LDWILGG++KD QLLETDP+L+KVE 
Sbjct: 1  MASLTMAFSPALTGRVFAATAAKGTGGSKEEKGLLDWILGGLQKDNQLLETDPILKKVEE 60

Query: 61 KNGGANNGGTVRGGKKNSVQVPPKKNGVFGGLFAK 94
          KNGG        GG+KNSV VPPKK G FGGLFAK
Sbjct: 61 KNGGG-------GGRKNSVAVPPKKKGGFGGLFAK 88

The following BLAST results are available for this feature:

BLAST of CmaCh02G007560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G007560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59_CUCSA	8.2e-33	81.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187910 PE=4 SV=1	[more]
A5B3D6_VITVI	6.3e-25	71.58	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028924 PE=4 SV=1	[more]
F6GUT9_VITVI	6.3e-25	71.58	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06170 PE=4 SV=...	[more]
V7BQ66_PHAVU	1.1e-24	70.21	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G065100g PE=4 SV=1	[more]
W9RP83_9ROSA	1.1e-24	71.58	Uncharacterized protein OS=Morus notabilis GN=L484_022051 PE=4 SV=1	[more]

BLAST of CmaCh02G007560 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47070.1	1.1e-12	47.31	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, ...	[more]

BLAST of CmaCh02G007560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450924\|ref\|XP_004143212.1\|	1.2e-32	81.44	PREDICTED: uncharacterized protein LOC101205268 [Cucumis sativus]	[more]
gi\|659128113\|ref\|XP_008464052.1\|	2.0e-32	82.47	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo]	[more]
gi\|147856054\|emb\|CAN78614.1\|	9.0e-25	71.58	hypothetical protein VITISV_028924 [Vitis vinifera]	[more]
gi\|225434658\|ref\|XP_002280087.1\|	9.0e-25	71.58	PREDICTED: uncharacterized protein LOC100265554 [Vitis vinifera]	[more]
gi\|703130641\|ref\|XP_010104673.1\|	1.5e-24	71.58	hypothetical protein L484_022051 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021584	TSP9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051234	establishment of localization
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0015979	photosynthesis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0009639	response to red or far red light
biological_process	GO:0009657	plastid organization
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G007560.1	CmaCh02G007560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..93 score: 2.6
None	No IPR available	PANTHER	PTHR36370	FAMILY NOT NAMED	coord: 1..95 score: 2.4
None	No IPR available	unknown	SSF144256	TSP9-like	coord: 20..95 score: 2.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G007560	Cucsa.139120	Cucumber (Gy14) v1	cgycmaB0391
CmaCh02G007560	Cla013350	Watermelon (97103) v1	cmawmB583
CmaCh02G007560	Csa6G187910	Cucumber (Chinese Long) v2	cmacuB617
CmaCh02G007560	MELO3C025865	Melon (DHL92) v3.5.1	cmameB547
CmaCh02G007560	ClCG02G019670	Watermelon (Charleston Gray)	cmawcgB527
CmaCh02G007560	CSPI06G13960	Wild cucumber (PI 183967)	cmacpiB622
CmaCh02G007560	CmoCh02G007610	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G007560	Lsi10G014200	Bottle gourd (USVL1VR-Ls)	cmalsiB547
CmaCh02G007560	Cp4.1LG16g06450	Cucurbita pepo (Zucchini)	cmacpeB625
CmaCh02G007560	Cp4.1LG05g09560	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G007560	MELO3C025865.2	Melon (DHL92) v3.6.1	cmamedB625
CmaCh02G007560	CsaV3_6G016350	Cucumber (Chinese Long) v3	cmacucB0740
CmaCh02G007560	Bhi10G000621	Wax gourd	cmawgoB0756
CmaCh02G007560	CsGy6G013850	Cucumber (Gy14) v2	cgybcmaB808
CmaCh02G007560	Carg03355	Silver-seed gourd	carcmaB0477
CmaCh02G007560	Carg23844	Silver-seed gourd	carcmaB0724

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G007560	CmaCh20G003570	Cucurbita maxima (Rimu)	cmacmaB468

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G007560	Cucurbita pepo (Zucchini)	cmacpeB636
CmaCh02G007560	Cucumber (Gy14) v2	cgybcmaB122
CmaCh02G007560	Cucumber (Gy14) v2	cgybcmaB643
CmaCh02G007560	Silver-seed gourd	carcmaB0533
CmaCh02G007560	Cucumber (Chinese Long) v3	cmacucB0739
CmaCh02G007560	Watermelon (97103) v2	cmawmbB614
CmaCh02G007560	Watermelon (97103) v2	cmawmbB658
CmaCh02G007560	Wax gourd	cmawgoB0770
CmaCh02G007560	Cucurbita maxima (Rimu)	cmacmaB228
CmaCh02G007560	Cucurbita moschata (Rifu)	cmacmoB577
CmaCh02G007560	Cucurbita moschata (Rifu)	cmacmoB605
CmaCh02G007560	Cucumber (Chinese Long) v2	cmacuB615
CmaCh02G007560	Watermelon (Charleston Gray)	cmawcgB569
CmaCh02G007560	Watermelon (97103) v1	cmawmB561