CmaCh02G007210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G007210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationCma_Chr02 : 4357283 .. 4358803 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGCGAGTCACACTGTAGGAATTTTTTTCGATCGGCGCCACTGGAACACTCGGCTTCCAAAAGCTCAGCTCAAAATAGGTTTGCCACCAACCATCACTTACTTGATTCTCCCTTAAATTTCAACTCAATCGACGAAACGGTTGCTCATAGAATCTCCAATTTGCGTAGTGAATCATCGCATTCACGTCTTGTCAACTTCTTTCGAGGAGCTTCAATGGCGTCCAACTTCGGTTTGGCCGAAGGGTTATCGGAGCACCGAGTGCGCCCGATATGTTGCGCCATCGATTCGAGACAGTTCAAGAATGCCGTCCTGAACTCCGCAAATTTGAGTTTGAATCTCACTTTTCAACTTCCTCTTTCAAAAATCCTAGCCCCTCTTTTCTTTTCCTTTTTCTAAGAACGCCTGTAACTTAATAGCCTCGGTGTTAATAGAAAGGCTAAATTGGGTAAGAAGGAGTAGCCTCGATGCTATAGAAAGGCTAAATTGGGTAAGAAGGGTTGAAGGCGTCACGACGGCCGCCGATAGTAGTAGCTTTAACAACAGGGTTGAAAGTGTGAGTGTAATTGAGACAAGAAATCCGAGTACAACCTTTGGCAATAAGATGAGTCTTGAAATACTAAACAGATCCATCGAGCAAATATTTAGTGTTAAACACCCATTTAGAGTCTACGATATTGGTGTCGCACGGGCAAAAAACCAAAATCTAAGTGTCTGTTTGTTGTAAAGCTCGAATTTCCTCATCCATGGCAGCAATCCACACACGACTTTTAATAGTAGATTTGAATTCTCTTGGCTCATCGAATCCAAGAAGAGCAAAAAGAAGTCCAAATGAGCCAAAAAAATAAAAAATTGTTGGATGACGAGTTTTGAAAATATCAACTTTTGCTCGTGTGATCATAGGATCAGAGCCCAAGGAAGAAGAGGAATTAGCAGCAAGTTCTATAGAGGGTGAATTAGAAGCTGAGGGTGGCAAAGAGCAACCTGCAAGAGAAGTATCAATTTGCACATACTCATCCACAAGGTCATAACAAATATCACATGGAGAGGAGCTAGATCAAGGAATGTGTAGTGTAGAAGGGGTAGGGGGATCGATATGGTAAAGACACGGCTCCAAGAAATTTGAAATATAAAAAGAGGAAAGAGACCTAGGGACAGCAGGAAAATGAGCTTCATCGAATTGAATGTGACCGGTGATATATTCTCAGTGGTGGTTGGATCAAGACAACAAAACCTTTTATGCATTTGAAACAATATAAGTTTCATTTTACCTTAACCCAGACACCTTCCTGTCCACCTTGATGCATTTGAACTTTTCGTCCAACAGAATCTGCTACATGTAAGTCATAACATCTCATTGATTATTGTATATTATATTTTGAGATTTTATGACCTTACCGTCTATAGTCGATACCCCTCTCATTTTCTATAGTCGATACCTCTTTTAGTTTATACTCGATAACTTCTCTGTCATCGATTTTTGTAGTTGTTGTAGGTACCTTGATCTCAACTATATAA

mRNA sequence

ATGGATAGCGAGTCACACTGTAGGAATTTTTTTCGATCGGCGCCACTGGAACACTCGGCTTCCAAAAGCTCAGCTCAAAATAGGTTTGCCACCAACCATCACTTACTTGATTCTCCCTTAAATTTCAACTCAATCGACGAAACGGTTGCTCATAGAATCTCCAATTTGCGTAGTGAATCATCGCATTCACGTCTTGTCAACTTCTTTCGAGGAGCTTCAATGGCGTCCAACTTCGGTTTGGCCGAAGGGTTATCGGAGCACCGAGTGCGCCCGATATGTTGCGCCATCGATTCGAGACAGTTCAAGAATGCCGTCCTGAACTCCGCAAATTTGAGTACCTTGATCTCAACTATATAA

Coding sequence (CDS)

ATGGATAGCGAGTCACACTGTAGGAATTTTTTTCGATCGGCGCCACTGGAACACTCGGCTTCCAAAAGCTCAGCTCAAAATAGGTTTGCCACCAACCATCACTTACTTGATTCTCCCTTAAATTTCAACTCAATCGACGAAACGGTTGCTCATAGAATCTCCAATTTGCGTAGTGAATCATCGCATTCACGTCTTGTCAACTTCTTTCGAGGAGCTTCAATGGCGTCCAACTTCGGTTTGGCCGAAGGGTTATCGGAGCACCGAGTGCGCCCGATATGTTGCGCCATCGATTCGAGACAGTTCAAGAATGCCGTCCTGAACTCCGCAAATTTGAGTACCTTGATCTCAACTATATAA

Protein sequence

MDSESHCRNFFRSAPLEHSASKSSAQNRFATNHHLLDSPLNFNSIDETVAHRISNLRSESSHSRLVNFFRGASMASNFGLAEGLSEHRVRPICCAIDSRQFKNAVLNSANLSTLISTI
Homology
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BLAST of CmaCh02G007210 vs. TAIR10
Match: AT5G58450.1 (AT5G58450.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 

Query: 69  FRGASMASNFGLAEGLSEHRVRPICCAIDSRQFKNAV 106
           F  + M+S FGLA G+ E RVRPI  AIDSRQFKNA+
Sbjct: 59  FLSSQMSSKFGLAGGIPERRVRPIWDAIDSRQFKNAL 95

The following BLAST results are available for this feature:
BLAST of CmaCh02G007210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007210 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh02G007210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58450.11.9e-0664.86 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CmaCh02G007210 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G007210.1CmaCh02G007210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G007210Cp4.1LG05g09890Cucurbita pepo (Zucchini)cmacpeB646
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G007210Cucumber (Gy14) v1cgycmaB0391
CmaCh02G007210Cucurbita moschata (Rifu)cmacmoB577
CmaCh02G007210Cucurbita moschata (Rifu)cmacmoB605
CmaCh02G007210Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G007210Wild cucumber (PI 183967)cmacpiB622
CmaCh02G007210Cucumber (Chinese Long) v2cmacuB617
CmaCh02G007210Melon (DHL92) v3.5.1cmameB542
CmaCh02G007210Watermelon (Charleston Gray)cmawcgB527
CmaCh02G007210Watermelon (97103) v1cmawmB583
CmaCh02G007210Cucurbita pepo (Zucchini)cmacpeB625
CmaCh02G007210Cucurbita pepo (Zucchini)cmacpeB636
CmaCh02G007210Bottle gourd (USVL1VR-Ls)cmalsiB547
CmaCh02G007210Cucumber (Gy14) v2cgybcmaB808
CmaCh02G007210Melon (DHL92) v3.6.1cmamedB615
CmaCh02G007210Melon (DHL92) v3.6.1cmamedB625
CmaCh02G007210Silver-seed gourdcarcmaB0477
CmaCh02G007210Cucumber (Chinese Long) v3cmacucB0740
CmaCh02G007210Watermelon (97103) v2cmawmbB614
CmaCh02G007210Wax gourdcmawgoB0756
CmaCh02G007210Cucurbita maxima (Rimu)cmacmaB228
CmaCh02G007210Cucurbita maxima (Rimu)cmacmaB468