CmaCh02G005910 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G005910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 3488493 .. 3488849 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCGAAGGCATCGAAACTTTCATGCTATCGCCTCCTTCGACTATTGTCCCTCCTCTTTCTTTTCATTCTCCTCATCACAATTACAGGTAACCAATGTTAAGGATATTTAGTTTTGAATTATAGTTTAACATATATATCATATTTTTCTACTGCAACTAACATATCTTTACTTTAAAATTTCACTATGCATGGTGTTTTAGGCTCTTTGGGTGGACGGAGTTTGCTTGAAAAGATGAGGCATAACAAGGAGGATCTGCTCGACATAGGTCGTGGGGGAGGATTGGTAAACGCCGATGACTTGGTGACGATGGATTATACTCCAGCCACCAAAAACCGTCCAATCCATAATTGA

mRNA sequence

ATGGTTTCGAAGGCATCGAAACTTTCATGCTATCGCCTCCTTCGACTATTGTCCCTCCTCTTTCTTTTCATTCTCCTCATCACAATTACAGGCTCTTTGGGTGGACGGAGTTTGCTTGAAAAGATGAGGCATAACAAGGAGGATCTGCTCGACATAGGTCGTGGGGGAGGATTGGTAAACGCCGATGACTTGGTGACGATGGATTATACTCCAGCCACCAAAAACCGTCCAATCCATAATTGA

Coding sequence (CDS)

ATGGTTTCGAAGGCATCGAAACTTTCATGCTATCGCCTCCTTCGACTATTGTCCCTCCTCTTTCTTTTCATTCTCCTCATCACAATTACAGGCTCTTTGGGTGGACGGAGTTTGCTTGAAAAGATGAGGCATAACAAGGAGGATCTGCTCGACATAGGTCGTGGGGGAGGATTGGTAAACGCCGATGACTTGGTGACGATGGATTATACTCCAGCCACCAAAAACCGTCCAATCCATAATTGA

Protein sequence

MVSKASKLSCYRLLRLLSLLFLFILLITITGSLGGRSLLEKMRHNKEDLLDIGRGGGLVNADDLVTMDYTPATKNRPIHN
Homology
[Close]
BLAST of CmaCh02G005910 vs. TrEMBL
Match: A0A0A0LM46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 1  MVSKASKLSCYRLLRLLSLLFLFILLITITGSLGGRSLLEKMRHNKEDLLDIGRGGGLVN 60
          ++ K    SC  LL+LL+ +FLF LLIT TGS   RSL+E    N +D       G  V 
Sbjct: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVKNHSG--VI 61

Query: 61 ADDLVTMDYTPATKNRPIHN 81
           +DLVTMDYTPA KN PIHN
Sbjct: 62 GNDLVTMDYTPARKNHPIHN 78

[Close]
BLAST of CmaCh02G005910 vs. NCBI nr
Match: gi|700206980|gb|KGN62099.1| (hypothetical protein Csa_2G297230 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 1  MVSKASKLSCYRLLRLLSLLFLFILLITITGSLGGRSLLEKMRHNKEDLLDIGRGGGLVN 60
          ++ K    SC  LL+LL+ +FLF LLIT TGS   RSL+E    N +D       G  V 
Sbjct: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVKNHSG--VI 61

Query: 61 ADDLVTMDYTPATKNRPIHN 81
           +DLVTMDYTPA KN PIHN
Sbjct: 62 GNDLVTMDYTPARKNHPIHN 78

The following BLAST results are available for this feature:
BLAST of CmaCh02G005910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM46_CUCSA1.2e-0851.25Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297230 PE=4 SV=1[more]
BLAST of CmaCh02G005910 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G005910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206980|gb|KGN62099.1|1.7e-0851.25hypothetical protein Csa_2G297230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005910.1CmaCh02G005910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G005910CmoCh02G005980Cucurbita moschata (Rifu)cmacmoB619
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G005910Watermelon (97103) v2cmawmbB603
CmaCh02G005910Watermelon (97103) v2cmawmbB620
CmaCh02G005910Wax gourdcmawgoB0761
CmaCh02G005910Cucurbita maxima (Rimu)cmacmaB472
CmaCh02G005910Cucurbita maxima (Rimu)cmacmaB499
CmaCh02G005910Cucumber (Gy14) v1cgycmaB0229
CmaCh02G005910Cucumber (Gy14) v1cgycmaB0697
CmaCh02G005910Cucurbita moschata (Rifu)cmacmoB609
CmaCh02G005910Cucurbita moschata (Rifu)cmacmoB621
CmaCh02G005910Wild cucumber (PI 183967)cmacpiB589
CmaCh02G005910Wild cucumber (PI 183967)cmacpiB596
CmaCh02G005910Wild cucumber (PI 183967)cmacpiB633
CmaCh02G005910Cucumber (Chinese Long) v2cmacuB627
CmaCh02G005910Cucumber (Chinese Long) v2cmacuB582
CmaCh02G005910Cucumber (Chinese Long) v2cmacuB591
CmaCh02G005910Melon (DHL92) v3.5.1cmameB539
CmaCh02G005910Watermelon (Charleston Gray)cmawcgB521
CmaCh02G005910Watermelon (Charleston Gray)cmawcgB534
CmaCh02G005910Watermelon (97103) v1cmawmB580
CmaCh02G005910Watermelon (97103) v1cmawmB584
CmaCh02G005910Watermelon (97103) v1cmawmB599
CmaCh02G005910Cucurbita pepo (Zucchini)cmacpeB599
CmaCh02G005910Cucurbita pepo (Zucchini)cmacpeB623
CmaCh02G005910Cucurbita pepo (Zucchini)cmacpeB629
CmaCh02G005910Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G005910Bottle gourd (USVL1VR-Ls)cmalsiB551
CmaCh02G005910Cucumber (Gy14) v2cgybcmaB223
CmaCh02G005910Cucumber (Gy14) v2cgybcmaB225
CmaCh02G005910Cucumber (Gy14) v2cgybcmaB232
CmaCh02G005910Cucumber (Gy14) v2cgybcmaB817
CmaCh02G005910Melon (DHL92) v3.6.1cmamedB620
CmaCh02G005910Silver-seed gourdcarcmaB1466
CmaCh02G005910Cucumber (Chinese Long) v3cmacucB0695
CmaCh02G005910Cucumber (Chinese Long) v3cmacucB0697
CmaCh02G005910Cucumber (Chinese Long) v3cmacucB0704
CmaCh02G005910Cucumber (Chinese Long) v3cmacucB0749