CmaCh02G005420 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Red chlorophyll catabolite reductase
Location	Cma_Chr02 : 2983295 .. 2984586 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATCGCGTTTCGGAGGAAGAAGAAGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCTGCGGAGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCAGATGTAGAGTATTATCAGAACCAAACCGGCACTTCACAGGGCACTCTTCTCATCCGATCTGCCATTCCACCGTCGCCGGTAACTTTCTTTTGGTTGTAATTTAATTTTTTTATTTTAAAATTAATTGTACCGGTTGTAAAAAGGTTGGTAAAAGGATACACAATTCCAATATTTATACTTATACATGAACGTTGTAGTGATTTATTATTGTTTATTGATTTGATCTTAGAGGGTTACATAATTCTCGTATTTATACTTATATATGACAAGAAATAGTAAATCATCAAATCTACTGACAATCTCTTAAAATCTTTGGTTAGTTTGAATATTTGAATCATATCTCAACTACTCTAAATTATATCTTTTTGAATACTTTAAATCATACCTCAACAATACCAACTTTCTCGAAATTTCAGATTGATTTCGTGATTGCAAGTTGGTTACACTTAAAGCAACCACACGGCGGCGCATTCAACATAACCAACATCGCCAGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGCTAGTGCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTTGATATCATCCTCCGTCCCGACTACCTCACCACTTTCTACGAGGAGACTGAGCTTGAGAAGTATCGACGCCGACTCGACGCCGTGCCGGAAGTAAGCCCGTACTTCTCCTCATCACTTTTCTTTCGAAAAGTTGTTTCGTCGACGGGAATTCTAGTGAGTATGAAGTGCGAGGAGAGCGAGTCGGGGCGTGTGGAAGAGATTATTCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGAGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGATCTTATGATTAAGAAGAAAGCAATCGAAATGGATCTAAGCAAAACGATGCCATTGCAATTTGGAGAAGAAGTTGCAGAGAGAGTTCTTCGAGTTATTAGAAGTTCTTTCAAAACTATTTGA

mRNA sequence

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATCGCGTTTCGGAGGAAGAAGAAGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCTGCGGAGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCAGATGTAGAGTATTATCAGAACCAAACCGGCACTTCACAGGGCACTCTTCTCATCCGATCTGCCATTCCACCGTCGCCGCAACCACACGGCGGCGCATTCAACATAACCAACATCGCCAGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGCTAGTGCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTTGATATCATCCTCCGTCCCGACTACCTCACCACTTTCTACGAGGAGACTGAGCTTGAGAAGTATCGACGCCGACTCGACGCCGTGCCGGAAGTAAGCCCGTACTTCTCCTCATCACTTTTCTTTCGAAAAGTTGTTTCGTCGACGGGAATTCTAGTGAGTATGAAGTGCGAGGAGAGCGAGTCGGGGCGTGTGGAAGAGATTATTCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGAGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGATCTTATGATTAAGAAGAAAGCAATCGAAATGGATCTAAGCAAAACGATGCCATTGCAATTTGGAGAAGAAGTTGCAGAGAGAGTTCTTCGAGTTATTAGAAGTTCTTTCAAAACTATTTGA

Coding sequence (CDS)

ATGGCTTTGACAACCTTGACGCTGGTCCCAAGAGCTTGTTATTGTCTTCCACCATCGCGTTTCGGAGGAAGAAGAAGAAGAACACGGCAAGTAATCAAGGCGGAGCTGCCGTCTGCGGAGATGGGGAGTGGTCGGCCGGCGTCGAAGCTGATGGAGTTTCCGCATCTGACGGCTGCGCACAGAGATCTGATGGTGGATTTAATCCAAGCCGTCGATGATGGGGTCGGAGAGCATCTACTTCCGTCGACGGTTCCGTCAGATGTAGAGTATTATCAGAACCAAACCGGCACTTCACAGGGCACTCTTCTCATCCGATCTGCCATTCCACCGTCGCCGCAACCACACGGCGGCGCATTCAACATAACCAACATCGCCAGCTACCTGAAAACCACAAACGACATTCCTCATTTCCAATTCGAGCTAGTGCAATGCAGCCCTACTTTTCTAATCTTCTTCCTCGATTTGATCCCTCGAGTTGATATCATCCTCCGTCCCGACTACCTCACCACTTTCTACGAGGAGACTGAGCTTGAGAAGTATCGACGCCGACTCGACGCCGTGCCGGAAGTAAGCCCGTACTTCTCCTCATCACTTTTCTTTCGAAAAGTTGTTTCGTCGACGGGAATTCTAGTGAGTATGAAGTGCGAGGAGAGCGAGTCGGGGCGTGTGGAAGAGATTATTCGTGAGGAAATCGGTCCGATCTCGAAAGAGGTGTTGAGGATATGGATGGAGTTGTGTAGTAATGGAGGAAGGGAGATTGAAGATGGTAATGAAAGGAGTTTGTTGGAGAAGAGAGATCTTATGATTAAGAAGAAAGCAATCGAAATGGATCTAAGCAAAACGATGCCATTGCAATTTGGAGAAGAAGTTGCAGAGAGAGTTCTTCGAGTTATTAGAAGTTCTTTCAAAACTATTTGA

Protein sequence

MALTTLTLVPRACYCLPPSRFGGRRRRTRQVIKAELPSAEMGSGRPASKLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSPQPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLRVIRSSFKTI

Homology

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BLAST of CmaCh02G005420 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-47
Identity = 110/299 (36.79%), Postives = 166/299 (55.52%), Query Frame = 1


Query: 18  PSRFGGRRRRTRQVIKAELPSAEMGSGRPASKLMEFPHLTAAHRDLMVDLIQAVDDGVGE 77
           PSRF    R      +A+  S E        K MEFP+++   + LMVDL+  V++ +  
Sbjct: 25  PSRFSKNLRP-----RAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQS 84

Query: 78  HLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSPQ------------PHGGAFNITNIA 137
            LLP  +P DV  + N  G+++ +L IRS    SP             P G + NIT+I+
Sbjct: 85  QLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSIS 144

Query: 138 SYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLD 197
            +L ++   P+F  EL+Q S   L+  LDL  R D++L PDYL  +Y++T L+ +R+ L 
Sbjct: 145 GFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLL 204

Query: 198 AVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISKEVLRIWMEL 257
            +PEV+PY S SLF R   S T  ++ +  EE +  ++EEI+R+ + P +KEVL +W+E 
Sbjct: 205 KLPEVNPYVSPSLFVRSAFSPTASMLKIDAEEED--KLEEILRDHVSPAAKEVLEVWLER 264

Query: 258 CSNGGRE--IEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLRVIRSSF 303
           C     E  +    ER  LE+RD   ++K+IE DL    P  FGEEV+ RV+  I+ +F
Sbjct: 265 CVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

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BLAST of CmaCh02G005420 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-37
Identity = 70/186 (37.63%), Postives = 119/186 (63.98%), Query Frame = 1


Query: 117 GAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETE 176
           GA +IT++   L  + D PHF  E +Q SPT ++  LDL+PR D+ L P+Y+  +YE+TE
Sbjct: 16  GAIDITSLFINLNASTDAPHFIMEFIQGSPTSMVVLLDLLPRKDLALHPEYIEKYYEDTE 75

Query: 177 LEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISK 236
           ++K R+ ++ +P+  PY S SLF R   S T +  ++ C +   G +EEI+   +  + K
Sbjct: 76  VDKQRKIIEQLPQARPYLSPSLFVRSAFSPTAVFFTIDCGKGGEGTLEEIVHGHLASVVK 135

Query: 237 EVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLR 296
            +L+IW++ C++   E+E+G ER ++ KRD  ++ K+IE+DL+  +P  FG +V+ R++ 
Sbjct: 136 GILQIWLDTCASDASEMEEG-EREIMVKRDRTVRSKSIEVDLTANLPRMFGPDVSGRIIA 195

Query: 297 VIRSSF 303
            IR +F
Sbjct: 196 EIRKAF 200

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BLAST of CmaCh02G005420 vs. TrEMBL
Match: Q1ELT6_CITLA (Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=2 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.2e-124
Identity = 240/315 (76.19%), Postives = 267/315 (84.76%), Query Frame = 1


Query: 8   LVPRACYC--LPPSRFGGRRRRTRQVIKAELPSAEM----GSGRPASKLMEFPHLTAAHR 67
           LV RACY   LPP RF   +  +R+V+KA LPS+E     G G   SKLMEFPHLTAAHR
Sbjct: 1   LVSRACYFVPLPPLRFQ-TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAHR 60

Query: 68  DLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSP--------- 127
           DLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ+GTSQGTLLIRSA+  SP         
Sbjct: 61  DLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASWL 120

Query: 128 ---QPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLT 187
              QP GGAFNITNIA YLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+LRPDYL 
Sbjct: 121 HLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYLV 180

Query: 188 TFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIRE 247
           T+YEET LEK+R++L A+PEVSPYFSSSL+FRKVVSSTGILVS+KCEES+S RVEEI+RE
Sbjct: 181 TYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVRE 240

Query: 248 EIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEE 305
           EIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGEE
Sbjct: 241 EIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGEE 300

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BLAST of CmaCh02G005420 vs. TrEMBL
Match: A0A0A0LLX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 3.7e-119
Identity = 234/323 (72.45%), Postives = 269/323 (83.28%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP--PSRFGGRRRRTRQVIKAELPSAE-MGSG---RPASKLMEFP 60
           M L  + L+  A   +P  P RF  +R  ++ V+KA   S+E M SG    P SKLMEFP
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQAKRS-SQPVLKAAFQSSEKMDSGGQVAPVSKLMEFP 60

Query: 61  HLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSP-- 120
           HLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSA+P SP  
Sbjct: 61  HLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPID 120

Query: 121 ----------QPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDII 180
                     QP GGAFNITNIA YLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DII
Sbjct: 121 FMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDII 180

Query: 181 LRPDYLTTFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGR 240
           LRPDYLTT+YE+T LEK R+RL A+PEVSPYFSSSL+FRKVVSSTGILV +KC+ESES R
Sbjct: 181 LRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESKR 240

Query: 241 VEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKT 300
           VEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSKT
Sbjct: 241 VEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSKT 300

Query: 301 MPLQFGEEVAERVLRVIRSSFKT 305
           MPLQFGEEVA RVL+VIRS+FKT
Sbjct: 301 MPLQFGEEVANRVLQVIRSAFKT 321

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BLAST of CmaCh02G005420 vs. TrEMBL
Match: C6L812_CUCSA (Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=CsRCCR PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.7e-84
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 83  TVPSDVEYYQNQTGTSQGTLLIRSAIPPSP------------QPHGGAFNITNIASYLKT 142
           TVP DVEYY+NQ GTSQGTLLIRSA+P SP            QP GGAFNITNIA YLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 143 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLDAVPEV 202
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DIILRPDYLTT+YE+T LEK R+RL A+PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 203 SPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 262
           SPYFSSSL+FRKVVSSTGILV +KC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 263 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 280
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

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BLAST of CmaCh02G005420 vs. TrEMBL
Match: B9HH31_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 1.9e-78
Identity = 164/296 (55.41%), Postives = 204/296 (68.92%), Query Frame = 1


Query: 26  RRTRQVIKA-ELPSAEMGSGRPASKLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST- 85
           R+ R  I+A     +EM       +LMEFPHL A H+DLMV LI AVD  +  HLLPS+ 
Sbjct: 27  RKIRNSIRALSTTPSEMEQPMRGQRLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSA 86

Query: 86  -VPSDVEYYQNQTGTSQGTLLIRSAIPPS------------PQPHGGAFNITNIASYLKT 145
            VP D EYYQNQ+G SQG+L I   +  S              P+GGA +ITNI  YLK+
Sbjct: 87  SVPPDAEYYQNQSGASQGSLCINRGVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKS 146

Query: 146 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLDA-VPE 205
           + D PHFQFELVQCSPT+ IFFLDLIPR D++L PDYL TFYE+++LE  R++LD  V E
Sbjct: 147 STDAPHFQFELVQCSPTYFIFFLDLIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLE 206

Query: 206 VSPYFSSSLFFRKVVSSTGILVSMKCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-S 265
             PYFSSSL+FR VVS TGILVS+ CE+   + R EEIIR+ I PI+ EVL +WM+ C  
Sbjct: 207 AKPYFSSSLYFRNVVSPTGILVSITCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVC 266

Query: 266 NGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLRVIRSSFK 304
            GG  I + NER  LEKRD MIK +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 267 KGGTAIIEENERDHLEKRDRMIKSRAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

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BLAST of CmaCh02G005420 vs. TrEMBL
Match: V4SF05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.6e-74
Identity = 153/268 (57.09%), Postives = 191/268 (71.27%), Query Frame = 1


Query: 49  KLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST-VPSDVEYYQNQTGTSQGTLLIRSA 108
           K MEFPHLTAAH+DLMV LI A++  +  HLL S+ VP DVE+YQN  GTSQG+L IR  
Sbjct: 10  KPMEFPHLTAAHKDLMVSLISALETRLDSHLLASSAVPPDVEFYQNDQGTSQGSLHIRRG 69

Query: 109 IPPS------------PQPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDL 168
           +P S              P G A NITN+ +YLK++ D+PHFQFELVQCSPT+ I FLD+
Sbjct: 70  LPSSHIDFVLASWLHLKVPTGSAMNITNLQAYLKSSTDVPHFQFELVQCSPTYFILFLDV 129

Query: 169 IPRVDIILRPDYLTTFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKC 228
            PR D++L P+YL TFYEE +LE  R+RL+ VPE  PY SSSL+FR VVS TGILVS+KC
Sbjct: 130 TPRKDLVLYPNYLKTFYEEAQLETLRQRLEQVPETKPYLSSSLYFRGVVSPTGILVSIKC 189

Query: 229 EE-SESGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAI 288
           EE   + R EEIIRE + PI+ +V+ IW+E   +G        ER+ LEKRDL++K +AI
Sbjct: 190 EEVGGTDRCEEIIREHVSPIAHDVMVIWLEKYFSGA--TVGVTERAELEKRDLLVKTRAI 249

Query: 289 EMDLSKTMPLQFGEEVAERVLRVIRSSF 303
           EMDLS ++PLQFG+EVA RVL VI+  F
Sbjct: 250 EMDLSSSLPLQFGQEVANRVLDVIKGVF 275

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BLAST of CmaCh02G005420 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2))

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-48
Identity = 110/299 (36.79%), Postives = 166/299 (55.52%), Query Frame = 1


Query: 18  PSRFGGRRRRTRQVIKAELPSAEMGSGRPASKLMEFPHLTAAHRDLMVDLIQAVDDGVGE 77
           PSRF    R      +A+  S E        K MEFP+++   + LMVDL+  V++ +  
Sbjct: 25  PSRFSKNLRP-----RAQFQSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQS 84

Query: 78  HLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSPQ------------PHGGAFNITNIA 137
            LLP  +P DV  + N  G+++ +L IRS    SP             P G + NIT+I+
Sbjct: 85  QLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSIS 144

Query: 138 SYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLD 197
            +L ++   P+F  EL+Q S   L+  LDL  R D++L PDYL  +Y++T L+ +R+ L 
Sbjct: 145 GFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLL 204

Query: 198 AVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISKEVLRIWMEL 257
            +PEV+PY S SLF R   S T  ++ +  EE +  ++EEI+R+ + P +KEVL +W+E 
Sbjct: 205 KLPEVNPYVSPSLFVRSAFSPTASMLKIDAEEED--KLEEILRDHVSPAAKEVLEVWLER 264

Query: 258 CSNGGRE--IEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLRVIRSSF 303
           C     E  +    ER  LE+RD   ++K+IE DL    P  FGEEV+ RV+  I+ +F
Sbjct: 265 CVKEEEEKIVVGEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 316

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BLAST of CmaCh02G005420 vs. NCBI nr
Match: gi|106880172|emb|CAJ80768.1| (red chlorophyll catabolite reductase [Citrullus lanatus])

HSP 1 Score: 453.4 bits (1165), Expect = 3.2e-124
Identity = 240/315 (76.19%), Postives = 267/315 (84.76%), Query Frame = 1


Query: 8   LVPRACYC--LPPSRFGGRRRRTRQVIKAELPSAEM----GSGRPASKLMEFPHLTAAHR 67
           LV RACY   LPP RF   +  +R+V+KA LPS+E     G G   SKLMEFPHLTAAHR
Sbjct: 1   LVSRACYFVPLPPLRFQ-TKSSSRRVLKAALPSSEKMRSGGRGAAESKLMEFPHLTAAHR 60

Query: 68  DLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSP--------- 127
           DLMVDLIQ V++GVGEHLLPSTVP DVEYY+NQ+GTSQGTLLIRSA+  SP         
Sbjct: 61  DLMVDLIQGVENGVGEHLLPSTVPPDVEYYENQSGTSQGTLLIRSALQSSPIDFMIASWL 120

Query: 128 ---QPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLT 187
              QP GGAFNITNIA YLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DI+LRPDYL 
Sbjct: 121 HLEQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIVLRPDYLV 180

Query: 188 TFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIRE 247
           T+YEET LEK+R++L A+PEVSPYFSSSL+FRKVVSSTGILVS+KCEES+S RVEEI+RE
Sbjct: 181 TYYEETGLEKHRQQLAALPEVSPYFSSSLYFRKVVSSTGILVSVKCEESKSERVEEIVRE 240

Query: 248 EIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEE 305
           EIGPISKEV+RIWMELC NGGREIE+  ERSL+EKRDLMIKKKAIEMDLSKTMPLQFGEE
Sbjct: 241 EIGPISKEVMRIWMELCMNGGREIEE-EERSLMEKRDLMIKKKAIEMDLSKTMPLQFGEE 300

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BLAST of CmaCh02G005420 vs. NCBI nr
Match: gi|449460580|ref|XP_004148023.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 5.3e-119
Identity = 234/323 (72.45%), Postives = 269/323 (83.28%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP--PSRFGGRRRRTRQVIKAELPSAE-MGSG---RPASKLMEFP 60
           M L  + L+  A   +P  P RF  +R  ++ V+KA   S+E M SG    P SKLMEFP
Sbjct: 1   MGLLAVNLISSASCFVPHSPLRFQAKRS-SQPVLKAAFQSSEKMDSGGQVAPVSKLMEFP 60

Query: 61  HLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPSP-- 120
           HLTA+HRDLMVDLI+ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIRSA+P SP  
Sbjct: 61  HLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPID 120

Query: 121 ----------QPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRVDII 180
                     QP GGAFNITNIA YLK +NDIPHFQFELVQCSPTFLIFFLDL+PR DII
Sbjct: 121 FMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDII 180

Query: 181 LRPDYLTTFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESESGR 240
           LRPDYLTT+YE+T LEK R+RL A+PEVSPYFSSSL+FRKVVSSTGILV +KC+ESES R
Sbjct: 181 LRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESKR 240

Query: 241 VEEIIREEIGPISKEVLRIWMELC-SNGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKT 300
           VEEII+EEIGPISKEV+RIWMELC +NGGRE+E+ +ERSL+EKRDLMIKKKAIEMDLSKT
Sbjct: 241 VEEIIQEEIGPISKEVMRIWMELCLNNGGRELEE-DERSLMEKRDLMIKKKAIEMDLSKT 300

Query: 301 MPLQFGEEVAERVLRVIRSSFKT 305
           MPLQFGEEVA RVL+VIRS+FKT
Sbjct: 301 MPLQFGEEVANRVLQVIRSAFKT 321

[Close]

BLAST of CmaCh02G005420 vs. NCBI nr
Match: gi|659116003|ref|XP_008457850.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo])

HSP 1 Score: 431.4 bits (1108), Expect = 1.3e-117
Identity = 229/325 (70.46%), Postives = 261/325 (80.31%), Query Frame = 1


Query: 1   MALTTLTLVPRACYCLP-----PSRFGGRRRRTRQVIKAELPSAEM----GSGRPASKLM 60
           M L    L+  AC  +P     P RF  +R   R V+KA L S+E     G   P SKLM
Sbjct: 1   MGLLAANLISSACCFVPLPPPSPLRFQAKRSSQR-VLKAALTSSEKMDSGGQAAPVSKLM 60

Query: 61  EFPHLTAAHRDLMVDLIQAVDDGVGEHLLPSTVPSDVEYYQNQTGTSQGTLLIRSAIPPS 120
           EFPHLTAAH DLM+ LIQ V++G+G+HLLPSTVP+DVEYY+NQ GTSQGTLLIR  IP S
Sbjct: 61  EFPHLTAAHTDLMLYLIQTVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRHGIPSS 120

Query: 121 P------------QPHGGAFNITNIASYLKTTNDIPHFQFELVQCSPTFLIFFLDLIPRV 180
           P            QP GGAF+ITNIA Y+K +NDIPHFQFELVQCSPTFLIFFLDL+PR 
Sbjct: 121 PIDFMIASWLHLKQPQGGAFDITNIAGYMKPSNDIPHFQFELVQCSPTFLIFFLDLLPRT 180

Query: 181 DIILRPDYLTTFYEETELEKYRRRLDAVPEVSPYFSSSLFFRKVVSSTGILVSMKCEESE 240
           DIIL PDYLTT+YEET LEK R+RL A+PEVSPYFSSSL+FRKVVSSTGILV +KCEESE
Sbjct: 181 DIILHPDYLTTYYEETGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCEESE 240

Query: 241 SGRVEEIIREEIGPISKEVLRIWMELCSNGGREIEDGNERSLLEKRDLMIKKKAIEMDLS 300
           S RVEEI+REEIGPISKEV+RIWMELC +GGRE+E+ +ERSL+EKRDLMIK+KAIEMDLS
Sbjct: 241 SKRVEEIVREEIGPISKEVMRIWMELCLSGGRELEE-DERSLMEKRDLMIKRKAIEMDLS 300

Query: 301 KTMPLQFGEEVAERVLRVIRSSFKT 305
           K+MPLQFGEEVA RVL+VIRS+FKT
Sbjct: 301 KSMPLQFGEEVANRVLQVIRSAFKT 323

[Close]

BLAST of CmaCh02G005420 vs. NCBI nr
Match: gi|253787599|dbj|BAH84859.1| (putative red chlorophyll catabolite reductase, partial [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 2.5e-84
Identity = 166/210 (79.05%), Postives = 184/210 (87.62%), Query Frame = 1


Query: 83  TVPSDVEYYQNQTGTSQGTLLIRSAIPPSP------------QPHGGAFNITNIASYLKT 142
           TVP DVEYY+NQ GTSQGTLLIRSA+P SP            QP GGAFNITNIA YLK 
Sbjct: 1   TVPPDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKP 60

Query: 143 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLDAVPEV 202
           +NDIPHFQFELVQCSPTFLIFFLDL+PR DIILRPDYLTT+YE+T LEK R+RL A+PEV
Sbjct: 61  SNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEV 120

Query: 203 SPYFSSSLFFRKVVSSTGILVSMKCEESESGRVEEIIREEIGPISKEVLRIWMELC-SNG 262
           SPYFSSSL+FRKVVSSTGILV +KC+ESES RVEEII+EEIGPISKEV+RIWMELC +NG
Sbjct: 121 SPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNG 180

Query: 263 GREIEDGNERSLLEKRDLMIKKKAIEMDLS 280
           GRE+E+ +ERSL+EKRDLMIKKKAIEMDLS
Sbjct: 181 GRELEE-DERSLMEKRDLMIKKKAIEMDLS 209

[Close]

BLAST of CmaCh02G005420 vs. NCBI nr
Match: gi|566180698|ref|XP_002310112.2| (hypothetical protein POPTR_0007s11040g [Populus trichocarpa])

HSP 1 Score: 300.8 bits (769), Expect = 2.7e-78
Identity = 164/296 (55.41%), Postives = 204/296 (68.92%), Query Frame = 1


Query: 26  RRTRQVIKA-ELPSAEMGSGRPASKLMEFPHLTAAHRDLMVDLIQAVDDGVGEHLLPST- 85
           R+ R  I+A     +EM       +LMEFPHL A H+DLMV LI AVD  +  HLLPS+ 
Sbjct: 27  RKIRNSIRALSTTPSEMEQPMRGQRLMEFPHLLAPHKDLMVGLISAVDKRLHGHLLPSSA 86

Query: 86  -VPSDVEYYQNQTGTSQGTLLIRSAIPPS------------PQPHGGAFNITNIASYLKT 145
            VP D EYYQNQ+G SQG+L I   +  S              P+GGA +ITNI  YLK+
Sbjct: 87  SVPPDAEYYQNQSGASQGSLCINRGVDSSHIDFILTSWLHLSLPNGGAMDITNIQGYLKS 146

Query: 146 TNDIPHFQFELVQCSPTFLIFFLDLIPRVDIILRPDYLTTFYEETELEKYRRRLDA-VPE 205
           + D PHFQFELVQCSPT+ IFFLDLIPR D++L PDYL TFYE+++LE  R++LD  V E
Sbjct: 147 STDAPHFQFELVQCSPTYFIFFLDLIPRKDLVLHPDYLKTFYEDSQLEALRKQLDTQVLE 206

Query: 206 VSPYFSSSLFFRKVVSSTGILVSMKCEE-SESGRVEEIIREEIGPISKEVLRIWMELC-S 265
             PYFSSSL+FR VVS TGILVS+ CE+   + R EEIIR+ I PI+ EVL +WM+ C  
Sbjct: 207 AKPYFSSSLYFRNVVSPTGILVSITCEDGGTTERAEEIIRDNIDPIANEVLELWMDSCVC 266

Query: 266 NGGREIEDGNERSLLEKRDLMIKKKAIEMDLSKTMPLQFGEEVAERVLRVIRSSFK 304
            GG  I + NER  LEKRD MIK +A+EMDLS +MP+QFG++VA+R+L VIR  F+
Sbjct: 267 KGGTAIIEENERDHLEKRDRMIKSRAVEMDLSSSMPIQFGQDVADRILGVIRGVFR 322

The following BLAST results are available for this feature:

BLAST of CmaCh02G005420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RCCR_ARATH	1.9e-47	36.79	Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=R...	[more]
RCCR_HORVU	8.6e-37	37.63	Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 ...	[more]

BLAST of CmaCh02G005420 vs. TrEMBL


Match Name	E-value	Identity	Description
Q1ELT6_CITLA	2.2e-124	76.19	Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=...	[more]
A0A0A0LLX2_CUCSA	3.7e-119	72.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1	[more]
C6L812_CUCSA	1.7e-84	79.05	Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=C...	[more]
B9HH31_POPTR	1.9e-78	55.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2	[more]
V4SF05_9ROSI	3.6e-74	57.09	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1	[more]

BLAST of CmaCh02G005420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37000.1	1.0e-48	36.79	accelerated cell death 2 (ACD2)	[more]

BLAST of CmaCh02G005420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|106880172\|emb\|CAJ80768.1\|	3.2e-124	76.19	red chlorophyll catabolite reductase [Citrullus lanatus]	[more]
gi\|449460580\|ref\|XP_004148023.1\|	5.3e-119	72.45	PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus]	[more]
gi\|659116003\|ref\|XP_008457850.1\|	1.3e-117	70.46	PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo]	[more]
gi\|253787599\|dbj\|BAH84859.1\|	2.5e-84	79.05	putative red chlorophyll catabolite reductase, partial [Cucumis sativus]	[more]
gi\|566180698\|ref\|XP_002310112.2\|	2.7e-78	55.41	hypothetical protein POPTR_0007s11040g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009439	RCC_reductase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006725	cellular aromatic compound metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0051186	cofactor metabolic process
biological_process	GO:0046483	heterocycle metabolic process
biological_process	GO:1901360	organic cyclic compound metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:0042440	pigment metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005420.1	CmaCh02G005420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009439	Red chlorophyll catabolite reductase	PFAM	PF06405	RCC_reductase	coord: 59..299 score: 2.0
None	No IPR available	PANTHER	PTHR34685	FAMILY NOT NAMED	coord: 24..305 score: 9.6E
None	No IPR available	PANTHER	PTHR34685:SF2	RED CHLOROPHYLL CATABOLITE REDUCTASE, CHLOROPLASTIC	coord: 24..305 score: 9.6E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005420	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005420	Cucumber (Chinese Long) v3	cmacucB0707
CmaCh02G005420	Watermelon (97103) v2	cmawmbB621
CmaCh02G005420	Watermelon (97103) v2	cmawmbB641
CmaCh02G005420	Wax gourd	cmawgoB0754
CmaCh02G005420	Cucumber (Gy14) v1	cgycmaB1020
CmaCh02G005420	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G005420	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005420	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005420	Melon (DHL92) v3.5.1	cmameB545
CmaCh02G005420	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005420	Watermelon (Charleston Gray)	cmawcgB552
CmaCh02G005420	Watermelon (97103) v1	cmawmB587
CmaCh02G005420	Watermelon (97103) v1	cmawmB606
CmaCh02G005420	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G005420	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005420	Bottle gourd (USVL1VR-Ls)	cmalsiB554
CmaCh02G005420	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005420	Cucumber (Gy14) v2	cgybcmaB235
CmaCh02G005420	Melon (DHL92) v3.6.1	cmamedB621
CmaCh02G005420	Melon (DHL92) v3.6.1	cmamedB634
CmaCh02G005420	Silver-seed gourd	carcmaB1466