CmaCh02G005360 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein, putative
Location	Cma_Chr02 : 2949135 .. 2949806 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACTAATACCACCGGCACCCTGGCTTCCCACGAGCATCCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCAACTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCGTTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTCGCGCTCCGCTTGACCGCCGACAACGTCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGCCTGCCATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAGGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATCAGTAATTCGTGTCCTCTCTGTAGAACCAAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACTAATACCACCGGCACCCTGGCTTCCCACGAGCATCCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCAACTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCGTTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTCGCGCTCCGCTTGACCGCCGACAACGTCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGCCTGCCATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAGGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATCAGTAATTCGTGTCCTCTCTGTAGAACCAAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACTAATACCACCGGCACCCTGGCTTCCCACGAGCATCCCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCAACTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCGTTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTCGCGCTCCGCTTGACCGCCGACAACGTCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGCCTGCCATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAGGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATCAGTAATTCGTGTCCTCTCTGTAGAACCAAATTAGAACAATAA

Protein sequence

MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ

Homology

[Close]

BLAST of CmaCh02G005360 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQISN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh02G005360 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1


Query: 145 SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAIE L            E   C+VC +      E  ++PC H+YHK C+
Sbjct: 196 TPPASK----SAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCL 255

Query: 205 LKWLQISNSCPLCRTKL 222
           L WL++ NSCP+CR +L
Sbjct: 256 LPWLELHNSCPVCRHEL 268

[Close]

BLAST of CmaCh02G005360 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 145 SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAI+ L   K      + E   C+VC +      +V ++PC HV+H+ C+
Sbjct: 188 TPPASK----SAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCL 247

Query: 205 LKWLQISNSCPLCRTKL 222
           L WL++ NSCP+CR +L
Sbjct: 248 LPWLELHNSCPVCRFEL 260

[Close]

BLAST of CmaCh02G005360 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 145 SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAIE L R +        E  +C+VC E    E E   +PC H++H  CI
Sbjct: 172 NPPASK----SAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCI 231

Query: 205 LKWLQISNSCPLCRTKL 222
           + WL I NSCP+CR +L
Sbjct: 232 VPWLSIRNSCPVCRFEL 243

[Close]

BLAST of CmaCh02G005360 vs. Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 151 GAPASAIERL---------QRQKFDGLREEEEEGD----CSVCCEALRGEEEVSRIPCGH 210
           GA  + IER          + Q   G ++E EE D    C++C   L   E+V R+PC H
Sbjct: 256 GAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMH 315

Query: 211 VYHKCCILKWLQISNSCPLCRTKLE 223
           ++H+ C+ +WL +S  CP+CR  +E
Sbjct: 316 LFHQLCVDQWLAMSKKCPICRVDIE 340

[Close]

BLAST of CmaCh02G005360 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.0e-54
Identity = 115/219 (52.51%), Postives = 150/219 (68.49%), Query Frame = 1


Query: 8   SLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPF 67
           + SF+ SIR N  G+ A++  P+QFVELRLGH S L+   S QILQQ+    + ++L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVD 127
            LR+LE PPF+ +  +  FLSS++I  A CD I+ +ISSFA +L A N++ NFHI+  +D
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 AIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRG- 187
            +   WVDLDP    E +     GAP SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 223
              E+EVSRIPCGH++HK CILKWL+ISNSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmaCh02G005360 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.6e-53
Identity = 118/229 (51.53%), Postives = 152/229 (66.38%), Query Frame = 1


Query: 8   SLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPF 67
           + SFQ SIR N   +LA+   P+QFV+LRL H   L+   S+QILQQ+  T + ++L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFA--LRLTAD-NVDLNFHIVV 127
            L +LE PPF+  + +  FLSS+ I  A CD I+  ISSFA  + L AD N+++NFHI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DVD +   WVDLDP    E +P    GA  S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALRG--------EEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+ISNSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmaCh02G005360 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.6e-34
Identity = 91/197 (46.19%), Postives = 120/197 (60.91%), Query Frame = 1


Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLH-FLSS 90
           Q VE+RL   S L+S  S Q +QQ+  T +  +LF F L +LE    L N  + H FL  
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELE----LENPSLFHDFLLQ 82

Query: 91  FSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAM 150
           F  P  +   I+  ISSFAL+L A N++LNFH++  VD +  I ++L+     +YSPP  
Sbjct: 83  FLSPADSA-AIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKFD-GLREEEEEGDCSVC-----CEALRGEEEVSRIPCGHVYHKCC 210
           NG PAS +ERL  +K+D G   E   G C VC     CE    +EE +RIPCGHVYHK C
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSC 202

Query: 211 ILKWLQISNSCPLCRTK 221
           ILKWL ++NSCPLCR++
Sbjct: 203 ILKWLNVNNSCPLCRSE 213

[Close]

BLAST of CmaCh02G005360 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.6e-33
Identity = 102/227 (44.93%), Postives = 131/227 (57.71%), Query Frame = 1


Query: 13  FSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQ------ILQQSPSTPLGESLFP 72
           FS  +    + + + +  Q + +RL   S LIS+S         IL+Q+P T +GE+LF 
Sbjct: 3   FSATSCVQCSFSGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS 62

Query: 73  FILRDLEHPPFLPN--YHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVV 132
             L +L++P       Y V  FL SF++  + C I+   I SFA +   +N    F I  
Sbjct: 63  --LSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNE--CFKIET 122

Query: 133 DVDAIEMIWVDLDPFLV------EEYSPPAMNGAPASAIERLQRQKFDGLREEEEE--GD 192
           +VD I+  W +  P L       EE  PP   GA  SAIER+++QKFDG R EEEE  GD
Sbjct: 123 NVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGFRGEEEEEIGD 182

Query: 193 CSVCCEAL-RGEEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 223
           CSVCCE + R   EV RIPCGHVYHK CILKWL+ISNSCPLCR  LE
Sbjct: 183 CSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

[Close]

BLAST of CmaCh02G005360 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 76/229 (33.19%), Postives = 120/229 (52.40%), Query Frame = 1


Query: 3   LTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGE 62
           ++F  S   Q+ +  + TG     +  + F++  +  S   ++    ++L Q+P  P   
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSP--LTGRPHEVLHQTPRIPYHN 60

Query: 63  SLFPFILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHI 122
           +LF   LR L+ P F    ++   LSS +I  AA   + + I+S  L++   N + NFHI
Sbjct: 61  ALFYLSLRQLQSPLF----YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHI 120

Query: 123 VVDVDAIEMIWVDL---------DPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEE 182
           + +VD I +IW+           +  +++E  P    G   +  ERL+ ++     + EE
Sbjct: 121 LAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEE-----KMEE 180

Query: 183 EGDCSVCCEALRGEE-EVSRIPCGHVYHKCCILKWLQISNSCPLCRTKL 222
            GDCS+C + L  E+ EV RIPCGHVYH+ CI KWL+  NSCPLCR  L
Sbjct: 181 LGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmaCh02G005360 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-11
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQISN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh02G005360 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 159 RLQRQKF-DGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCILKWLQISNSCPLC 218
           RL++QK+    R  +E   C VC E  + EEE+ R+ CGH +H  CI +WL+  N CP+C
Sbjct: 573 RLKQQKYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPIC 632

Query: 219 RT 220
           +T
Sbjct: 633 KT 634

[Close]

BLAST of CmaCh02G005360 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1


Query: 145 SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAI+ L   K      + E   C+VC +      +V ++PC HV+H+ C+
Sbjct: 188 TPPASK----SAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCL 247

Query: 205 LKWLQISNSCPLCRTKL 222
           L WL++ NSCP+CR +L
Sbjct: 248 LPWLELHNSCPVCRFEL 260

[Close]

BLAST of CmaCh02G005360 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-10
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1


Query: 145 SPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIPCGHVYHKCCI 204
           +PPA      SAIE L R +        E  +C+VC E    E E   +PC H++H  CI
Sbjct: 172 NPPASK----SAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCI 231

Query: 205 LKWLQISNSCPLCRTKL 222
           + WL I NSCP+CR +L
Sbjct: 232 VPWLSIRNSCPVCRFEL 243

[Close]

BLAST of CmaCh02G005360 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 159 RLQRQKFDGLREEEEEGDCSVCCEALRG---EEEVSRIPCGHVYHKCCILKWLQISNSCP 218
           R++ ++F  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETEP--CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTKL 222
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]

BLAST of CmaCh02G005360 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 5.7e-54
Identity = 115/219 (52.51%), Postives = 150/219 (68.49%), Query Frame = 1


Query: 8   SLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPF 67
           + SF+ SIR N  G+ A++  P+QFVELRLGH S L+   S QILQQ+    + ++L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVD 127
            LR+LE PPF+ +  +  FLSS++I  A CD I+ +ISSFA +L A N++ NFHI+  +D
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 AIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRG- 187
            +   WVDLDP    E +     GAP SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 223
              E+EVSRIPCGH++HK CILKWL+ISNSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmaCh02G005360 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 3.7e-53
Identity = 118/229 (51.53%), Postives = 152/229 (66.38%), Query Frame = 1


Query: 8   SLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPF 67
           + SFQ SIR N   +LA+   P+QFV+LRL H   L+   S+QILQQ+  T + ++L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPVAACDIIYQEISSFA--LRLTAD-NVDLNFHIVV 127
            L +LE PPF+  + +  FLSS+ I  A CD I+  ISSFA  + L AD N+++NFHI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DVD +   WVDLDP    E +P    GA  S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALRG--------EEEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+ISNSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmaCh02G005360 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 103/197 (52.28%), Postives = 126/197 (63.96%), Query Frame = 1


Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLE--HPPFLPNYHVLHFLS 90
           Q VE+RL   S L+S SS QI+QQ+  TP+ ++LF F L +LE  +PPF  +  +L FLS
Sbjct: 24  QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFPLPELELENPPFFFHDLLLQFLS 83

Query: 91  SFSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPA 150
                 A    I+  ISSFAL+L A N++LNFH++  VD +  I VDLD     +YSP  
Sbjct: 84  P-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISVDLD-LDPPQYSPLV 143

Query: 151 MNGAPASAIERLQRQKFDGLREEEEEGD-CSVCCEALR------GEEEVSRIPCGHVYHK 210
            NGAPAS IERL  +K+D     EE GD C VC E L        EEEV+RIPCGHVYHK
Sbjct: 144 RNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHK 203

Query: 211 CCILKWLQISNSCPLCR 219
            CILKWL I+NSCPLCR
Sbjct: 204 YCILKWLNINNSCPLCR 214

[Close]

BLAST of CmaCh02G005360 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 106/227 (46.70%), Postives = 135/227 (59.47%), Query Frame = 1


Query: 1   MSLTFGDSLSFQFSIRTNTTGTLASHEHPMQFVELRLGHSSHLISRSSRQILQQSPSTPL 60
           MSL+   S    FS   NT            F+  R G+SS LI     QILQQ+PS  +
Sbjct: 1   MSLSTSSSFQCSFSATPNTD----------HFLICRFGYSSRLIIVD--QILQQTPSILM 60

Query: 61  GESLFPFILRDLEHPPFLPNYHVL--HFLSSFSIP--VAACDIIYQEISSFALRLTADNV 120
           GE+L PF   +L HP    +   L   FL SF++    +A   I ++I SFAL+    NV
Sbjct: 61  GETLIPF--SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNV 120

Query: 121 DLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAMNGAPASAIERLQRQKFDGLREEEEEGD 180
             +F I  +V+ +E + +    F  E  SPP   GAP SAIERL+++KFD L +EEE GD
Sbjct: 121 HGSFKIEANVEHVEDLIIGEQGFQ-ETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGD 180

Query: 181 CSVCCEALRGE-EEVSRIPCGHVYHKCCILKWLQISNSCPLCRTKLE 223
           CSVC E L+G+ +EVSRIPCGHVYHK CIL WLQI+NSCPLCR  L+
Sbjct: 181 CSVCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

[Close]

BLAST of CmaCh02G005360 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 6.5e-34
Identity = 91/197 (46.19%), Postives = 120/197 (60.91%), Query Frame = 1


Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLH-FLSS 90
           Q VE+RL   S L+S  S Q +QQ+  T +  +LF F L +LE    L N  + H FL  
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELE----LENPSLFHDFLLQ 82

Query: 91  FSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAM 150
           F  P  +   I+  ISSFAL+L A N++LNFH++  VD +  I ++L+     +YSPP  
Sbjct: 83  FLSPADSA-AIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIERLQRQKFD-GLREEEEEGDCSVC-----CEALRGEEEVSRIPCGHVYHKCC 210
           NG PAS +ERL  +K+D G   E   G C VC     CE    +EE +RIPCGHVYHK C
Sbjct: 143 NGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNCEREEEKEEATRIPCGHVYHKSC 202

Query: 211 ILKWLQISNSCPLCRTK 221
           ILKWL ++NSCPLCR++
Sbjct: 203 ILKWLNVNNSCPLCRSE 213

The following BLAST results are available for this feature:

BLAST of CmaCh02G005360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	1.1e-09	37.04	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RING1_GOSHI	4.3e-09	38.96	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RNG1L_ARATH	4.3e-09	37.66	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RDUF2_ARATH	5.6e-09	41.56	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RN165_MOUSE	5.6e-09	35.29	RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1	[more]

BLAST of CmaCh02G005360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	4.0e-54	52.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	2.6e-53	51.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	4.6e-34	46.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	8.6e-33	44.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	2.8e-23	33.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]

BLAST of CmaCh02G005360 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04240.1	6.3e-11	37.04	RING/U-box superfamily protein	[more]
AT1G45180.1	1.8e-10	43.55	RING/U-box superfamily protein	[more]
AT3G19950.1	2.4e-10	37.66	RING/U-box superfamily protein	[more]
AT5G59550.1	3.1e-10	41.56	zinc finger (C3HC4-type RING finger) family protein	[more]
AT4G05350.1	7.0e-10	40.91	RING/U-box superfamily protein	[more]

BLAST of CmaCh02G005360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	5.7e-54	52.51	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	3.7e-53	51.53	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	3.0e-39	52.28	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	1.0e-34	46.70	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	6.5e-34	46.19	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005360.1	CmaCh02G005360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 score: 1.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 score: 8.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 177..218 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 172..221 score: 1.2
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 149..222 score: 6.4
None	No IPR available	PANTHER	PTHR22763:SF46	PROTEIN SAN1	coord: 149..222 score: 6.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 164..221 score: 1.44

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005360	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G005360	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G005360	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005360	Watermelon (97103) v1	cmawmB570
CmaCh02G005360	Watermelon (97103) v1	cmawmB587
CmaCh02G005360	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G005360	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005360	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G005360	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005360	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G005360	Silver-seed gourd	carcmaB1466
CmaCh02G005360	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005360	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G005360	Watermelon (97103) v2	cmawmbB621
CmaCh02G005360	Wax gourd	cmawgoB0768
CmaCh02G005360	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G005360	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G005360	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G005360	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G005360	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005360	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G005360	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005360	Cucumber (Chinese Long) v2	cmacuB626