CmaCh02G005340 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein
Location	Cma_Chr02 : 2944851 .. 2945522 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Protein sequence

MSLTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ

Homology

[Close]

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

[Close]

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 1


Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAIE L            E   C+VC +  +   E  ++PC H+YHK C
Sbjct: 191 PNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDC 250

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 251 LLPWLELHNSCPVCRHEL 268

[Close]

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 163 QKFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCR 222
           Q   G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +WL M+  CP+CR
Sbjct: 277 QDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336

[Close]

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 167 GLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +WL M+  CP+CR  +E
Sbjct: 280 GKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 339

[Close]

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SF+CS R N   +  ++ QPLQ VELRLGH S L+   S QILQQT    I D L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVN 127
            LR+L  PPF+S S + RF+SS++I  A C+ IF +ISSFA  L AGN++ N HI+  ++
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 VIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG- 187
            +   WVDLDP    E +     G P SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
              E+EVSRIPCGH++HK CILKWL+++NSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 114/229 (49.78%), Postives = 147/229 (64.19%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SFQCS R N  +++ +  QPLQ V+LRL H   L+   S+QILQQT  T I D L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFA---LHLAAGNVHRNLHIVV 127
            L +L  PPF+S   + RF+SS+ I  A C+ IF  ISSFA   L  A  N++ N HI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DV+++   WVDLDP    E +P    G   S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALKG--------EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+++NSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-36
Identity = 101/220 (45.91%), Postives = 131/220 (59.55%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS  C  R+  T          QLVE+RL   S L+S  S Q +QQT  T I +ALF F
Sbjct: 6   NLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 65

Query: 68  FLRDL-LHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDV 127
            L +L L  P L    +L+F+S      A    IF  ISSFAL LAAGN++ N H++  V
Sbjct: 66  PLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATV 125

Query: 128 NVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFD-GLREEEEEGDCSVC----- 187
           +++  I ++L+     +YSPP  NGVPAS +ERL  +K+D G   E   G C VC     
Sbjct: 126 DLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLN 185

Query: 188 CEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
           CE  + +EE +RIPCGHVYHK CILKWL +NNSCPLCR++
Sbjct: 186 CEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.1e-31
Identity = 99/237 (41.77%), Postives = 130/237 (54.85%), Query Frame = 1


Query: 3   LTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQ------ILQQTP 62
           ++F  +   QCSF        + +    Q + +RL   S LIS+S         IL+QTP
Sbjct: 1   MSFSATSCVQCSF--------SGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTP 60

Query: 63  STPIGDALFPFFLRDLLHPPFLSKSHVL--RFMSSFSIPIAACNIIFTEISSFALHLAAG 122
            T IG+ALF   L +L +P    +   +   F+ SF++  + C I+   I SFA      
Sbjct: 61  FTLIGEALFS--LSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDIN 120

Query: 123 NVHRNLHIVVDVNVIEMIWVDLDPFLI------EEYSPPSMNGVPASAIERLQRQKFDGL 182
           N      I  +V+ I+  W +  P L       EE  PP   G   SAIER+++QKFDG 
Sbjct: 121 N--ECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGF 180

Query: 183 REEEEE--GDCSVCCEALKGEE-EVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           R EEEE  GDCSVCCE +K +  EV RIPCGHVYHK CILKWL+++NSCPLCR  LE
Sbjct: 181 RGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

[Close]

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 73/193 (37.82%), Postives = 109/193 (56.48%), Query Frame = 1


Query: 32  LVELRLGHSSHLISRSS--RQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSS 91
           ++E++L +    IS SS  ++IL +T  TP  +ALF   +  L HP F    H+ +F+ S
Sbjct: 22  VLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLSVHQLQHPLF----HIRQFLYS 81

Query: 92  FSIPIAACNIIFTEISSFALHLAAGNV--HRNLHIVVDVNVIEMIWVDLDPFLIEEYSPP 151
            +I       I  +I+SF  H+  GN   + N +++  V+++ +I ++           P
Sbjct: 82  LNI---RRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIE---------EQP 141

Query: 152 SMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-EVSRIPCGHVYHKCCILK 211
              G    A+ERL +     L+ EEE+GDCSVC + L  E+ EV RIPCGHVYH+ CI K
Sbjct: 142 RAEGWRGVAVERLSK-----LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 193

Query: 212 WLQMNNSCPLCRT 220
           WL  +NSCPLCR+
Sbjct: 202 WLNSSNSCPLCRS 193

[Close]

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-11
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1


Query: 108 ALHLAAGNVH---RNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIE-RLQRQ 167
           ++ L A ++H   R++ + VD    E +        +EE       G+    I  RL++Q
Sbjct: 524 SIMLGAADIHDRYRDMRLDVDNMTYEEL------LSLEERIGDVCTGLNEETISNRLKQQ 583

Query: 168 KF-DGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRT 220
           K+    R  +E   C VC E  K EEE+ R+ CGH +H  CI +WL+  N CP+C+T
Sbjct: 584 KYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634

[Close]

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-11
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-11
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1


Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

[Close]

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 1


Query: 140 LIEEYSPPSMNGVPASA---IERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCG 199
           LIE+ +     G P ++   I  L   K        +   C+VC E      + + +PC 
Sbjct: 184 LIEQLTQDDRPGPPPASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCK 243

Query: 200 HVYHKCCILKWLQMNNSCPLCRTQL 222
           H+YHK CI+ WL++NNSCP+CR  L
Sbjct: 244 HIYHKDCIVPWLRLNNSCPICRRDL 268

[Close]

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 159 RLQRQKFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQMNNSCP 218
           R++ ++F  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETEP--CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTQL 222
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SF+CS R N   +  ++ QPLQ VELRLGH S L+   S QILQQT    I D L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVN 127
            LR+L  PPF+S S + RF+SS++I  A C+ IF +ISSFA  L AGN++ N HI+  ++
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 VIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG- 187
            +   WVDLDP    E +     G P SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
              E+EVSRIPCGH++HK CILKWL+++NSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 7.7e-51
Identity = 114/229 (49.78%), Postives = 147/229 (64.19%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SFQCS R N  +++ +  QPLQ V+LRL H   L+   S+QILQQT  T I D L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFA---LHLAAGNVHRNLHIVV 127
            L +L  PPF+S   + RF+SS+ I  A C+ IF  ISSFA   L  A  N++ N HI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DV+++   WVDLDP    E +P    G   S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALKG--------EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+++NSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 9.4e-41
Identity = 109/222 (49.10%), Postives = 135/222 (60.81%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS +C   ++   T        QLVE+RL   S L+S SS QI+QQT  TPI DALF F
Sbjct: 6   TLSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 65

Query: 68  FLRDLL--HPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVD 127
            L +L   +PPF     +L+F+S      A    IF  ISSFAL LAAGN++ N H++  
Sbjct: 66  PLPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIAT 125

Query: 128 VNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL 187
           V+++  I VDLD     +YSP   NG PAS IERL  +K+D     EE GD C VC E L
Sbjct: 126 VDLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDL 185

Query: 188 ------KGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
                 + EEEV+RIPCGHVYHK CILKWL +NNSCPLCR +
Sbjct: 186 NCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 216

[Close]

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 101/220 (45.91%), Postives = 131/220 (59.55%), Query Frame = 1


Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS  C  R+  T          QLVE+RL   S L+S  S Q +QQT  T I +ALF F
Sbjct: 6   NLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 65

Query: 68  FLRDL-LHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDV 127
            L +L L  P L    +L+F+S      A    IF  ISSFAL LAAGN++ N H++  V
Sbjct: 66  PLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATV 125

Query: 128 NVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFD-GLREEEEEGDCSVC----- 187
           +++  I ++L+     +YSPP  NGVPAS +ERL  +K+D G   E   G C VC     
Sbjct: 126 DLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLN 185

Query: 188 CEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
           CE  + +EE +RIPCGHVYHK CILKWL +NNSCPLCR++
Sbjct: 186 CEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 5.9e-35
Identity = 105/225 (46.67%), Postives = 130/225 (57.78%), Query Frame = 1


Query: 3   LTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGD 62
           ++   S SFQCSF        T H      +  R G+SS LI     QILQQTPS  +G+
Sbjct: 1   MSLSTSSSFQCSFSATPN---TDH-----FLICRFGYSSRLIIVD--QILQQTPSILMGE 60

Query: 63  ALFPFFLRDLLHPPFLSKSHVL--RFMSSFSIP--IAACNIIFTEISSFALHLAAGNVHR 122
            L PF   +L HP        L   F+ SF++    +A   I  +I SFAL     NVH 
Sbjct: 61  TLIPF--SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFH--NVHG 120

Query: 123 NLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCS 182
           +  I  +V  +E + +    F  E  SPP   G P SAIERL+++KFD L +EEE GDCS
Sbjct: 121 SFKIEANVEHVEDLIIGEQGFQ-ETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCS 180

Query: 183 VCCEALKGE-EEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           VC E LKG+ +EVSRIPCGHVYHK CIL WLQ+NNSCPLCR  L+
Sbjct: 181 VCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

The following BLAST results are available for this feature:

BLAST of CmaCh02G005340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XERIC_ARATH	8.6e-10	37.04	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RNG1L_ARATH	1.5e-09	37.18	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1...	[more]
RING1_GOSHI	1.5e-09	38.46	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]
RN165_MOUSE	3.3e-09	39.06	RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1	[more]
RN165_HUMAN	5.6e-09	40.00	RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1	[more]

BLAST of CmaCh02G005340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	1.2e-53	52.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	5.4e-51	49.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	4.9e-36	45.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	8.1e-31	41.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0KYC0_CUCSA	2.8e-23	37.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1	[more]

BLAST of CmaCh02G005340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G45180.1	2.8e-11	33.33	RING/U-box superfamily protein	[more]
AT2G04240.1	4.8e-11	37.04	RING/U-box superfamily protein	[more]
AT3G19950.1	8.3e-11	37.18	RING/U-box superfamily protein	[more]
AT1G60360.1	2.4e-10	35.29	RING/U-box superfamily protein	[more]
AT4G05350.1	2.4e-10	40.91	RING/U-box superfamily protein	[more]

BLAST of CmaCh02G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	1.7e-53	52.05	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	7.7e-51	49.78	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	9.4e-41	49.10	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	7.0e-36	45.91	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	5.9e-35	46.67	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005340.1	CmaCh02G005340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 score: 4.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 score: 5.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 177..218 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 172..221 score: 3.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 35..49 score: 7.5E-18coord: 139..222 score: 7.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 164..221 score: 1.15

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005340	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005340	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G005340	Silver-seed gourd	carcmaB1466
CmaCh02G005340	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005340	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G005340	Watermelon (97103) v2	cmawmbB621
CmaCh02G005340	Wax gourd	cmawgoB0768
CmaCh02G005340	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G005340	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G005340	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G005340	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G005340	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005340	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G005340	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005340	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G005340	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G005340	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G005340	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005340	Watermelon (97103) v1	cmawmB570
CmaCh02G005340	Watermelon (97103) v1	cmawmB587
CmaCh02G005340	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G005340	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005340	Bottle gourd (USVL1VR-Ls)	cmalsiB567