CmaCh02G005340 (gene) Cucurbita maxima (Rimu)

NameCmaCh02G005340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING/U-box superfamily protein
LocationCma_Chr02 : 2944851 .. 2945522 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCGGCGACTCTCTGTCCTTCCAATGTTCCTTCCGCACCAATACCACCGCCACCGTGACTTCCCACGAGCAACCCTTGCAGCTCGTGGAACTTCGACTCGGACATTCGAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCTCAACTCCAATAGGCGATGCTCTGTTTCCTTTTTTTCTGCGCGACCTGCTCCACCCACCCTTCCTCTCCAAATCCCACGTTCTTCGGTTTATGTCTTCCTTCAGCATCCCCATTGCCGCCTGCAATATCATCTTTACGGAGATCTCCTCCTTTGCGCTCCACTTGGCCGCCGGCAACGTCCATCGTAACTTACACATCGTCGTGGATGTGAATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTGAAGAATACTCTCCGCCTTCGATGAACGGGGTGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGAAATTTGATGGGTTGAGGGAGGAAGAGGAGGAGGGGGACTGCAGTGTCTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGCAGAATCCCATGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAACAATTCATGTCCTCTCTGTAGAACCCAATTAGAACAATAA

Protein sequence

MSLTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ
BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-10
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1

Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1

Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 1

Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAIE L            E   C+VC +  +   E  ++PC H+YHK C
Sbjct: 191 PNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDC 250

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 251 LLPWLELHNSCPVCRHEL 268

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.3e-09
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1

Query: 163 QKFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCR 222
           Q   G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +WL M+  CP+CR
Sbjct: 277 QDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICR 336

BLAST of CmaCh02G005340 vs. Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 24/60 (40.00%), Postives = 39/60 (65.00%), Query Frame = 1

Query: 167 GLREEEEEGD----CSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           G ++E EE D    C++C   L+  E+V R+PC H++H+ C+ +WL M+  CP+CR  +E
Sbjct: 280 GKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIE 339

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SF+CS R N   +  ++ QPLQ VELRLGH S L+   S QILQQT    I D L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVN 127
            LR+L  PPF+S S + RF+SS++I  A C+ IF +ISSFA  L AGN++ N HI+  ++
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 VIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG- 187
            +   WVDLDP    E +     G P SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
              E+EVSRIPCGH++HK CILKWL+++NSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.4e-51
Identity = 114/229 (49.78%), Postives = 147/229 (64.19%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SFQCS R N  +++ +  QPLQ V+LRL H   L+   S+QILQQT  T I D L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFA---LHLAAGNVHRNLHIVV 127
            L +L  PPF+S   + RF+SS+ I  A C+ IF  ISSFA   L  A  N++ N HI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DV+++   WVDLDP    E +P    G   S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALKG--------EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+++NSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-36
Identity = 101/220 (45.91%), Postives = 131/220 (59.55%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS  C  R+  T          QLVE+RL   S L+S  S Q +QQT  T I +ALF F
Sbjct: 6   NLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 65

Query: 68  FLRDL-LHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDV 127
            L +L L  P L    +L+F+S      A    IF  ISSFAL LAAGN++ N H++  V
Sbjct: 66  PLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATV 125

Query: 128 NVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFD-GLREEEEEGDCSVC----- 187
           +++  I ++L+     +YSPP  NGVPAS +ERL  +K+D G   E   G C VC     
Sbjct: 126 DLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLN 185

Query: 188 CEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
           CE  + +EE +RIPCGHVYHK CILKWL +NNSCPLCR++
Sbjct: 186 CEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.1e-31
Identity = 99/237 (41.77%), Postives = 130/237 (54.85%), Query Frame = 1

Query: 3   LTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQ------ILQQTP 62
           ++F  +   QCSF        + +    Q + +RL   S LIS+S         IL+QTP
Sbjct: 1   MSFSATSCVQCSF--------SGYPNTDQTLIVRLRFCSRLISQSLAPEIVPDVILEQTP 60

Query: 63  STPIGDALFPFFLRDLLHPPFLSKSHVL--RFMSSFSIPIAACNIIFTEISSFALHLAAG 122
            T IG+ALF   L +L +P    +   +   F+ SF++  + C I+   I SFA      
Sbjct: 61  FTLIGEALFS--LSNLQYPLQQQELEYMVNEFLRSFNLRSSVCRIVSHNILSFAQQFDIN 120

Query: 123 NVHRNLHIVVDVNVIEMIWVDLDPFLI------EEYSPPSMNGVPASAIERLQRQKFDGL 182
           N      I  +V+ I+  W +  P L       EE  PP   G   SAIER+++QKFDG 
Sbjct: 121 N--ECFKIETNVDYIKEYWTEAAPELYPISTVGEEGLPP--RGASESAIERVKKQKFDGF 180

Query: 183 REEEEE--GDCSVCCEALKGEE-EVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           R EEEE  GDCSVCCE +K +  EV RIPCGHVYHK CILKWL+++NSCPLCR  LE
Sbjct: 181 RGEEEEEIGDCSVCCEEIKRKGGEVRRIPCGHVYHKSCILKWLEISNSCPLCRAALE 223

BLAST of CmaCh02G005340 vs. TrEMBL
Match: A0A0A0KYC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 73/193 (37.82%), Postives = 109/193 (56.48%), Query Frame = 1

Query: 32  LVELRLGHSSHLISRSS--RQILQQTPSTPIGDALFPFFLRDLLHPPFLSKSHVLRFMSS 91
           ++E++L +    IS SS  ++IL +T  TP  +ALF   +  L HP F    H+ +F+ S
Sbjct: 22  VLEVQLSYLERAISVSSFSQRILYETQPTPFNNALFYLSVHQLQHPLF----HIRQFLYS 81

Query: 92  FSIPIAACNIIFTEISSFALHLAAGNV--HRNLHIVVDVNVIEMIWVDLDPFLIEEYSPP 151
            +I       I  +I+SF  H+  GN   + N +++  V+++ +I ++           P
Sbjct: 82  LNI---RRETIARQIASFVAHMCNGNTGWNSNFYVIARVDLVRVIRIE---------EQP 141

Query: 152 SMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEE-EVSRIPCGHVYHKCCILK 211
              G    A+ERL +     L+ EEE+GDCSVC + L  E+ EV RIPCGHVYH+ CI K
Sbjct: 142 RAEGWRGVAVERLSK-----LKSEEEKGDCSVCLDELDCEKREVIRIPCGHVYHESCIFK 193

Query: 212 WLQMNNSCPLCRT 220
           WL  +NSCPLCR+
Sbjct: 202 WLNSSNSCPLCRS 193

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-11
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1

Query: 108 ALHLAAGNVH---RNLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIE-RLQRQ 167
           ++ L A ++H   R++ + VD    E +        +EE       G+    I  RL++Q
Sbjct: 524 SIMLGAADIHDRYRDMRLDVDNMTYEEL------LSLEERIGDVCTGLNEETISNRLKQQ 583

Query: 168 KF-DGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRT 220
           K+    R  +E   C VC E  K EEE+ R+ CGH +H  CI +WL+  N CP+C+T
Sbjct: 584 KYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-11
Identity = 30/81 (37.04%), Postives = 45/81 (55.56%), Query Frame = 1

Query: 142 EEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R K      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQ-MNNSCPLCRTQL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-11
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1

Query: 147 PSMNGVPA---SAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCC 206
           P+  G P    SAI+ L   K      + E   C+VC +  +   +V ++PC HV+H+ C
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 207 ILKWLQMNNSCPLCRTQL 222
           +L WL+++NSCP+CR +L
Sbjct: 243 LLPWLELHNSCPVCRFEL 260

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT1G60360.1 (AT1G60360.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 1

Query: 140 LIEEYSPPSMNGVPASA---IERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIPCG 199
           LIE+ +     G P ++   I  L   K        +   C+VC E      + + +PC 
Sbjct: 184 LIEQLTQDDRPGPPPASEPTINSLPSVKITPQHLTNDMSQCTVCMEEFIVGGDATELPCK 243

Query: 200 HVYHKCCILKWLQMNNSCPLCRTQL 222
           H+YHK CI+ WL++NNSCP+CR  L
Sbjct: 244 HIYHKDCIVPWLRLNNSCPICRRDL 268

BLAST of CmaCh02G005340 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 1

Query: 159 RLQRQKFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQMNNSCP 218
           R++ ++F  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETEP--CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTQL 222
           LCRT++
Sbjct: 201 LCRTEI 204

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 114/219 (52.05%), Postives = 146/219 (66.67%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SF+CS R N   +  ++ QPLQ VELRLGH S L+   S QILQQT    I D L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDVN 127
            LR+L  PPF+S S + RF+SS++I  A C+ IF +ISSFA  L AGN++ N HI+  ++
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 VIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCSVCCEALKG- 187
            +   WVDLDP    E +     G P SAIERL ++K+DG   EE E +CSVC E L G 
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGK 185

Query: 188 ---EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
              E+EVSRIPCGH++HK CILKWL+++NSCPLCR +LE
Sbjct: 186 TEKEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 7.7e-51
Identity = 114/229 (49.78%), Postives = 147/229 (64.19%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           + SFQCS R N  +++ +  QPLQ V+LRL H   L+   S+QILQQT  T I D L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  FLRDLLHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFA---LHLAAGNVHRNLHIVV 127
            L +L  PPF+S   + RF+SS+ I  A C+ IF  ISSFA   L  A  N++ N HI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD--CSVCCE 187
           DV+++   WVDLDP    E +P    G   S IER+ ++K+DG   EE+EGD  CSVC E
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYE 185

Query: 188 ALKG--------EEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLEQ 224
            L G        E+EVSRIPCGH+YHK CILKWL+++NSCPLCR +LE+
Sbjct: 186 QLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 9.4e-41
Identity = 109/222 (49.10%), Postives = 135/222 (60.81%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS +C   ++   T        QLVE+RL   S L+S SS QI+QQT  TPI DALF F
Sbjct: 6   TLSLECCIHSSVATTADE-----QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHF 65

Query: 68  FLRDLL--HPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVD 127
            L +L   +PPF     +L+F+S      A    IF  ISSFAL LAAGN++ N H++  
Sbjct: 66  PLPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIAT 125

Query: 128 VNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGD-CSVCCEAL 187
           V+++  I VDLD     +YSP   NG PAS IERL  +K+D     EE GD C VC E L
Sbjct: 126 VDLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDL 185

Query: 188 ------KGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
                 + EEEV+RIPCGHVYHK CILKWL +NNSCPLCR +
Sbjct: 186 NCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRRE 216

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 101/220 (45.91%), Postives = 131/220 (59.55%), Query Frame = 1

Query: 8   SLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGDALFPF 67
           +LS  C  R+  T          QLVE+RL   S L+S  S Q +QQT  T I +ALF F
Sbjct: 6   NLSLDCCVRSIPTTA------DKQLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHF 65

Query: 68  FLRDL-LHPPFLSKSHVLRFMSSFSIPIAACNIIFTEISSFALHLAAGNVHRNLHIVVDV 127
            L +L L  P L    +L+F+S      A    IF  ISSFAL LAAGN++ N H++  V
Sbjct: 66  PLPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATV 125

Query: 128 NVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFD-GLREEEEEGDCSVC----- 187
           +++  I ++L+     +YSPP  NGVPAS +ERL  +K+D G   E   G C VC     
Sbjct: 126 DLLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLN 185

Query: 188 CEALKGEEEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQ 221
           CE  + +EE +RIPCGHVYHK CILKWL +NNSCPLCR++
Sbjct: 186 CEREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

BLAST of CmaCh02G005340 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 5.9e-35
Identity = 105/225 (46.67%), Postives = 130/225 (57.78%), Query Frame = 1

Query: 3   LTFGDSLSFQCSFRTNTTATVTSHEQPLQLVELRLGHSSHLISRSSRQILQQTPSTPIGD 62
           ++   S SFQCSF        T H      +  R G+SS LI     QILQQTPS  +G+
Sbjct: 1   MSLSTSSSFQCSFSATPN---TDH-----FLICRFGYSSRLIIVD--QILQQTPSILMGE 60

Query: 63  ALFPFFLRDLLHPPFLSKSHVL--RFMSSFSIP--IAACNIIFTEISSFALHLAAGNVHR 122
            L PF   +L HP        L   F+ SF++    +A   I  +I SFAL     NVH 
Sbjct: 61  TLIPF--SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQFH--NVHG 120

Query: 123 NLHIVVDVNVIEMIWVDLDPFLIEEYSPPSMNGVPASAIERLQRQKFDGLREEEEEGDCS 182
           +  I  +V  +E + +    F  E  SPP   G P SAIERL+++KFD L +EEE GDCS
Sbjct: 121 SFKIEANVEHVEDLIIGEQGFQ-ETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCS 180

Query: 183 VCCEALKGE-EEVSRIPCGHVYHKCCILKWLQMNNSCPLCRTQLE 223
           VC E LKG+ +EVSRIPCGHVYHK CIL WLQ+NNSCPLCR  L+
Sbjct: 181 VCYEELKGQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XERIC_ARATH8.6e-1037.04Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RNG1L_ARATH1.5e-0937.18E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
RING1_GOSHI1.5e-0938.46E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RN165_MOUSE3.3e-0939.06RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1[more]
RN165_HUMAN5.6e-0940.00RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA1.2e-5352.05Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA5.4e-5149.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA4.9e-3645.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA8.1e-3141.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0KYC0_CUCSA2.8e-2337.82Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003650 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G45180.12.8e-1133.33 RING/U-box superfamily protein[more]
AT2G04240.14.8e-1137.04 RING/U-box superfamily protein[more]
AT3G19950.18.3e-1137.18 RING/U-box superfamily protein[more]
AT1G60360.12.4e-1035.29 RING/U-box superfamily protein[more]
AT4G05350.12.4e-1040.91 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|1.7e-5352.05PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|7.7e-5149.78hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|9.4e-4149.10PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|7.0e-3645.91PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|5.9e-3546.67PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G005340.1CmaCh02G005340.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..218
score: 4.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..217
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 177..218
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 172..221
score: 3.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 35..49
score: 7.5E-18coord: 139..222
score: 7.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 164..221
score: 1.15

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None