CmaCh02G005330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G005330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RING/U-box superfamily protein
Location	Cma_Chr02 : 2942001 .. 2942642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

mRNA sequence

ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

Coding sequence (CDS)

ATGCCTCTCGCAAATGCCTCCACCCTCCGCTACTCTCTCCGCCGCAACCACGGCGCCGATCAATTCCTCCGATTCCGGCTGTGCTATTCCAGCCGTCTGATCTCCCGATCGCCGTCCGCCGGCCTTCCCTACGACATCCTGGAAGAAACTCCCTCGACTCCAATGGCGGATGCTCTGTTTCCTCTGCCTCTACGAGAGCTGGAAGATCCGTTATTCTGCCACGCTTACTTGATTGAATTGGTGTCCTCCTTGAACCTCGACTCCATGTCCTGCAACCCCATTGTCCAGAAGATCACGTCGTTGGTCACACAGTGGGCCGCCGTAGACTACGACGCGAAGTTCCAATTGGTGGCGGACATTGATTACATTCAAATGTTTTGGATGGAGAAGCGCCCGGGTTCAGTTGGGCGAGGTGTAATGGTGGAGGAGAAGGTGGTTCTGAAGGAAGCTGAAGTGGCGGCGGCGGAAAAGCAGGGAATTGGGGGAGAAGAGTGCAGTGTGTGCTACGAAAGCTATGAAGCAGAGAAGGGGGGAGAGAGGGAGGTGGCTAAAATCCCATGCGGCCATGTGTTTCACAAATCATGCATCCTCACCTGGTTTCAAAGGAGCAATTCGTGCCCTTTGTGTAGAGCCAAATTATAG

Protein sequence

MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALFPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL

Homology

[Close]

BLAST of CmaCh02G005330 vs. Swiss-Prot
Match: AMFR_MOUSE (E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-09
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           VA  E+  +  ++C++C++S +A +       K+PCGH+FH SC+ +W ++  SCP CR 
Sbjct: 328 VATPEELAVNNDDCAICWDSMQAAR-------KLPCGHLFHNSCLRSWLEQDTSCPTCRM 382

Query: 212 KL 214
            L
Sbjct: 388 SL 382

[Close]

BLAST of CmaCh02G005330 vs. Swiss-Prot
Match: AMFR_HUMAN (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-09
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           VA  E+  +  ++C++C++S +A +       K+PCGH+FH SC+ +W ++  SCP CR 
Sbjct: 328 VATPEELAVNNDDCAICWDSMQAAR-------KLPCGHLFHNSCLRSWLEQDTSCPTCRM 382

Query: 212 KL 214
            L
Sbjct: 388 SL 382

[Close]

BLAST of CmaCh02G005330 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-08
Identity = 30/87 (34.48%), Postives = 45/87 (51.72%), Query Frame = 1


Query: 127 WMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIP 186
           W ++ P    + V+    VV+   E      Q   G +C VC   +E ++     V ++P
Sbjct: 47  WDQRLPPPAAKAVVQSLPVVIISPE------QADKGVKCPVCLLEFEEQES----VREMP 106

Query: 187 CGHVFHKSCILTWFQRSNSCPLCRAKL 214
           C H+FH  CIL W  ++NSCPLCR +L
Sbjct: 107 CKHLFHTGCILPWLNKTNSCPLCRLEL 123

[Close]

BLAST of CmaCh02G005330 vs. Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 164 ECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           +C VC   +EAE+     V ++PC H+FH +CIL W  ++NSCPLCR +L
Sbjct: 87  KCPVCLLEFEAEE----TVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132

[Close]

BLAST of CmaCh02G005330 vs. Swiss-Prot
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1


Query: 152 VAAAEKQGIGGEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 211
           V   ++Q   G EC VC E Y  E+    EV ++PC H FH SCI+ W +  ++CP+CR 
Sbjct: 215 VTVTQEQVDMGLECPVCKEDYTVEE----EVRQLPCNHFFHSSCIVPWLELHDTCPVCRK 272

Query: 212 KL 214
            L
Sbjct: 275 SL 272

[Close]

BLAST of CmaCh02G005330 vs. TrEMBL
Match: A0A0A0L2F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.1e-32
Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALF 60
           MPL +AST RYS+RR  G +Q L+ RL    RL+S SPSAGLPY+IL+E+ S P+ +A F
Sbjct: 1   MPLESASTFRYSIRRRCGVEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATF 60

Query: 61  PLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQ-WAAVDYDAKFQLVAD 120
           PLPLR++ED   C  Y+++L+SS NL +++   I +KITS+V +   A DYDAKF++VA+
Sbjct: 61  PLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAE 120

Query: 121 IDYIQMF---------WMEKRPGSVGRGVMVEEKVVLK----EAEVAAAEKQGIGGEECS 180
           ID+I+M+         W+ +   S  RGV+VEE+VVL+        A +   G GG   S
Sbjct: 121 IDHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRRAAWSCGGGEGGSRGS 180

[Close]

BLAST of CmaCh02G005330 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-30
Identity = 81/229 (35.37%), Postives = 129/229 (56.33%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNH-GADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADAL 60
           M  A ++ ++Y L  +  G +  L+  + +  ++IS SP  G P+++L +TP  P  +AL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVAD 120
           F L LR+L+ PLF   Y+ +++SSLN+   +   + ++I S + Q    + +  F ++A+
Sbjct: 61  FYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAE 120

Query: 121 IDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIG---GE------------E 180
           +D+I++ W+   P   G G   EE VVL EA  A   K+G+G   GE            +
Sbjct: 121 VDFIRLIWL---PSMGGGGAGAEETVVLDEAPPAV--KRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           CS+C +    E   +REV +IPCGHV+H+SCI  W +  NSCPLCR  L
Sbjct: 181 CSICLDELSCE---KREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmaCh02G005330 vs. TrEMBL
Match: A0A0A0K2W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.5e-30
Identity = 81/229 (35.37%), Postives = 129/229 (56.33%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNH-GADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADAL 60
           M  A ++ ++Y L  +  G +  L+  + +  ++IS SP  G P+++L +TP  P  +AL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVAD 120
           F L LR+L+ PLF   Y+ +++SSLN+   +   + ++I S + Q    + +  F ++A+
Sbjct: 61  FYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAE 120

Query: 121 IDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIG---GE------------E 180
           +D+I++ W+   P   G G   EE VVL EA  A   K+G+G   GE            +
Sbjct: 121 VDFIRLIWL---PSMGGGGAGAEETVVLDEAPPAV--KRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           CS+C +    E   +REV +IPCGHV+H+SCI  W +  NSCPLCR  L
Sbjct: 181 CSICLDELSCE---KREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmaCh02G005330 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-28
Identity = 80/199 (40.20%), Postives = 112/199 (56.28%), Query Frame = 1


Query: 21  QFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALFPLPLRELEDPLFC-HAYLIE 80
           QF+  RL + S+L+  SPS    + IL++T    ++D L   PLRELEDP F  H+ L  
Sbjct: 29  QFVELRLGHFSQLVL-SPS----HQILQQTSPILISDTLIRFPLRELEDPPFISHSSLCR 88

Query: 81  LVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSVGRGV 140
            +SS N+    C+ I  KI+S   Q  A + ++ F ++A +D++   W++  P       
Sbjct: 89  FLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFVYTHWVDLDPAE--DAA 148

Query: 141 MVEEKVVLKEAEVAAAEK-QGIGGEE----CSVCYESYEAEKGGEREVAKIPCGHVFHKS 200
            V +       E    EK  G GGEE    CSVCYE    +   E+EV++IPCGH+FHKS
Sbjct: 149 AVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTEKEKEVSRIPCGHMFHKS 208

Query: 201 CILTWFQRSNSCPLCRAKL 214
           CIL W + SNSCPLCR +L
Sbjct: 209 CILKWLKISNSCPLCRGEL 220

[Close]

BLAST of CmaCh02G005330 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 80/235 (34.04%), Postives = 126/235 (53.62%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNHGAD--------QFLRFRLCYSSRLISRSPSAGLPYDILEETPS 60
           M L    + + S+RRN  +         QF++ RL +  +L+  +PS      IL++T  
Sbjct: 1   MSLPITFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLV-HTPSQ----QILQQTSP 60

Query: 61  TPMADALFPLPLRELEDPLFC-HAYLIELVSSLNLDSMSCNPIVQKITSLVTQW---AAV 120
           T ++D L P  L ELEDP F  + +L   +SS ++ +  C+ I   I+S   Q    A  
Sbjct: 61  TLISDTLIPFSLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADS 120

Query: 121 DYDAKFQLVADIDYIQMFWMEKRPGS------VGRGVMVEEKVVLKEAEVAAAEKQGIGG 180
           + +  F ++AD+D +   W++  P         G    V E+V+ ++ +    E++  G 
Sbjct: 121 NINVNFHIIADVDIVYTHWVDLDPAEDAPAVRKGASTSVIERVMKEKYDGNGGEEKE-GD 180

Query: 181 EECSVCYESY----EAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           ++CSVCYE      E E   E+EV++IPCGH++HKSCIL W + SNSCPLCR +L
Sbjct: 181 DQCSVCYEQLYGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRREL 229

[Close]

BLAST of CmaCh02G005330 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 117 VADIDYIQMFWMEKRPGSVGRGVMVEEKVV--LKEAEVAAAEKQGIGGEECSVCYESYEA 176
           V ++ Y ++  +E+R G V  G+  EE +   LK+ +  ++ +     E C VC E Y+ 
Sbjct: 543 VDNMTYEELLSLEERIGDVCTGLN-EETISNRLKQQKYKSSTRSSQEVEPCCVCQEEYKE 602

Query: 177 EKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCR 211
               E E+ ++ CGH FH  CI  W ++ N CP+C+
Sbjct: 603 ----EEEIGRLECGHDFHSQCIKEWLKQKNLCPICK 633

[Close]

BLAST of CmaCh02G005330 vs. TAIR10
Match: AT4G12190.1 (AT4G12190.1 RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-09
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1


Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           E CS+C ES  +     R++ ++ C HVFH  C+L W +R N+CPLCR +L
Sbjct: 20  EPCSICLESLVSGPK-PRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRTEL 69

[Close]

BLAST of CmaCh02G005330 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1


Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           E CS+C ES  +     R+V ++ C HVFH  C+L W +R N+CPLCR ++
Sbjct: 155 EPCSICLESLVSGPK-PRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]

BLAST of CmaCh02G005330 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1


Query: 163 EECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRA 212
           EECSVC   +E +  G R + K  CGHVFH  CI TWF+  +SCPLCRA
Sbjct: 111 EECSVCLSEFEEDDEG-RVLPK--CGHVFHVDCIDTWFRSRSSCPLCRA 156

[Close]

BLAST of CmaCh02G005330 vs. TAIR10
Match: AT1G18770.1 (AT1G18770.1 RING/U-box superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-09
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 162 GEECSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           GE C +C E +       R V  +PCGH F   C+L WF+ ++SCPLCR KL
Sbjct: 56  GEMCIICLEEFSEG----RRVVTLPCGHDFDDECVLKWFETNHSCPLCRFKL 103

[Close]

BLAST of CmaCh02G005330 vs. NCBI nr
Match: gi|778688326|ref|XP_011652721.1| (PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 7.6e-32
Identity = 90/201 (44.78%), Postives = 126/201 (62.69%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALF 60
           MPL +AST RYS+RR  G +Q L+ RL    RL+S SPSAGLPY+IL+E+ S P+ +A F
Sbjct: 1   MPLESASTFRYSIRRRCGVEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATF 60

Query: 61  PLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQ-WAAVDYDAKFQLVAD 120
           PLPLR++ED   C  Y+++L+SS NL +++   I +KITS+V +   A DYDAKF++VA+
Sbjct: 61  PLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAE 120

Query: 121 IDYIQMF---------WMEKRPGSVGRGVMVEEKVVL-------KEAEVAAAEKQGIGGE 178
           ID+I+M+         W+ +   S  RGV+VEE+VVL       +E E    +K G    
Sbjct: 121 IDHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRREREREREKKGGFDER 180

[Close]

BLAST of CmaCh02G005330 vs. NCBI nr
Match: gi|700200785|gb|KGN55918.1| (hypothetical protein Csa_3G036440 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 88/194 (45.36%), Postives = 123/194 (63.40%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNHGADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALF 60
           MPL +AST RYS+RR  G +Q L+ RL    RL+S SPSAGLPY+IL+E+ S P+ +A F
Sbjct: 1   MPLESASTFRYSIRRRCGVEQSLQIRLGRIVRLLSGSPSAGLPYEILQESASIPVHEATF 60

Query: 61  PLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQ-WAAVDYDAKFQLVAD 120
           PLPLR++ED   C  Y+++L+SS NL +++   I +KITS+V +   A DYDAKF++VA+
Sbjct: 61  PLPLRDVEDSCLCEIYILQLLSSFNLGTVTSGIISKKITSMVVEVLGAGDYDAKFEMVAE 120

Query: 121 IDYIQMF---------WMEKRPGSVGRGVMVEEKVVLK----EAEVAAAEKQGIGGEECS 180
           ID+I+M+         W+ +   S  RGV+VEE+VVL+        A +   G GG   S
Sbjct: 121 IDHIRMYFWTEEEERSWVGRGNNSERRGVVVEERVVLEGVPGRRRAAWSCGGGEGGSRGS 180

[Close]

BLAST of CmaCh02G005330 vs. NCBI nr
Match: gi|449454422|ref|XP_004144954.1| (PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 9.3e-30
Identity = 81/229 (35.37%), Postives = 129/229 (56.33%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNH-GADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADAL 60
           M  A ++ ++Y L  +  G +  L+  + +  ++IS SP  G P+++L +TP  P  +AL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVAD 120
           F L LR+L+ PLF   Y+ +++SSLN+   +   + ++I S + Q    + +  F ++A+
Sbjct: 61  FYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAE 120

Query: 121 IDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIG---GE------------E 180
           +D+I++ W+   P   G G   EE VVL EA  A   K+G+G   GE            +
Sbjct: 121 VDFIRLIWL---PSMGGGGAGAEETVVLDEAPPAV--KRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           CS+C +    E   +REV +IPCGHV+H+SCI  W +  NSCPLCR  L
Sbjct: 181 CSICLDELSCE---KREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmaCh02G005330 vs. NCBI nr
Match: gi|778730084|ref|XP_011659694.1| (PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 9.3e-30
Identity = 81/229 (35.37%), Postives = 129/229 (56.33%), Query Frame = 1


Query: 1   MPLANASTLRYSLRRNH-GADQFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADAL 60
           M  A ++ ++Y L  +  G +  L+  + +  ++IS SP  G P+++L +TP  P  +AL
Sbjct: 1   MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNAL 60

Query: 61  FPLPLRELEDPLFCHAYLIELVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVAD 120
           F L LR+L+ PLF   Y+ +++SSLN+   +   + ++I S + Q    + +  F ++A+
Sbjct: 61  FYLSLRQLQSPLF---YITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAE 120

Query: 121 IDYIQMFWMEKRPGSVGRGVMVEEKVVLKEAEVAAAEKQGIG---GE------------E 180
           +D+I++ W+   P   G G   EE VVL EA  A   K+G+G   GE            +
Sbjct: 121 VDFIRLIWL---PSMGGGGAGAEETVVLDEAPPAV--KRGVGVARGERLRSEEKMEELGD 180

Query: 181 CSVCYESYEAEKGGEREVAKIPCGHVFHKSCILTWFQRSNSCPLCRAKL 214
           CS+C +    E   +REV +IPCGHV+H+SCI  W +  NSCPLCR  L
Sbjct: 181 CSICLDELSCE---KREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPL 218

[Close]

BLAST of CmaCh02G005330 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 80/199 (40.20%), Postives = 112/199 (56.28%), Query Frame = 1


Query: 21  QFLRFRLCYSSRLISRSPSAGLPYDILEETPSTPMADALFPLPLRELEDPLFC-HAYLIE 80
           QF+  RL + S+L+  SPS    + IL++T    ++D L   PLRELEDP F  H+ L  
Sbjct: 29  QFVELRLGHFSQLVL-SPS----HQILQQTSPILISDTLIRFPLRELEDPPFISHSSLCR 88

Query: 81  LVSSLNLDSMSCNPIVQKITSLVTQWAAVDYDAKFQLVADIDYIQMFWMEKRPGSVGRGV 140
            +SS N+    C+ I  KI+S   Q  A + ++ F ++A +D++   W++  P       
Sbjct: 89  FLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFVYTHWVDLDPAE--DAA 148

Query: 141 MVEEKVVLKEAEVAAAEK-QGIGGEE----CSVCYESYEAEKGGEREVAKIPCGHVFHKS 200
            V +       E    EK  G GGEE    CSVCYE    +   E+EV++IPCGH+FHKS
Sbjct: 149 AVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTEKEKEVSRIPCGHMFHKS 208

Query: 201 CILTWFQRSNSCPLCRAKL 214
           CIL W + SNSCPLCR +L
Sbjct: 209 CILKWLKISNSCPLCRGEL 220

The following BLAST results are available for this feature:

BLAST of CmaCh02G005330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AMFR_MOUSE	5.3e-09	37.10	E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2	[more]
AMFR_HUMAN	5.3e-09	37.10	E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2	[more]
RN181_DANRE	2.6e-08	34.48	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2	[more]
RN181_MOUSE	4.5e-08	48.00	E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=1 SV=1	[more]
RN115_HUMAN	4.5e-08	41.94	E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2	[more]

BLAST of CmaCh02G005330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F8_CUCSA	9.1e-32	45.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G036440 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	6.5e-30	35.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]
A0A0A0K2W2_CUCSA	6.5e-30	35.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G025210 PE=4 SV=1	[more]
A0A0A0LRB0_CUCSA	2.1e-28	40.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	1.8e-24	34.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]

BLAST of CmaCh02G005330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G45180.1	1.9e-09	32.29	RING/U-box superfamily protein	[more]
AT4G12190.1	2.5e-09	45.10	RING/U-box superfamily protein	[more]
AT4G05350.1	3.3e-09	45.10	RING/U-box superfamily protein	[more]
AT3G62690.1	3.3e-09	57.14	AtL5	[more]
AT1G18770.1	5.7e-09	46.15	RING/U-box superfamily protein	[more]

BLAST of CmaCh02G005330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688326\|ref\|XP_011652721.1\|	7.6e-32	44.78	PREDICTED: uncharacterized protein LOC105435064 [Cucumis sativus]	[more]
gi\|700200785\|gb\|KGN55918.1\|	1.3e-31	45.36	hypothetical protein Csa_3G036440 [Cucumis sativus]	[more]
gi\|449454422\|ref\|XP_004144954.1\|	9.3e-30	35.37	PREDICTED: uncharacterized protein LOC101214496 [Cucumis sativus]	[more]
gi\|778730084\|ref\|XP_011659694.1\|	9.3e-30	35.37	PREDICTED: uncharacterized protein LOC105436225 [Cucumis sativus]	[more]
gi\|778674460\|ref\|XP_011650219.1\|	3.0e-28	40.20	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR011016	Znf_RING-CH
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G005330.1	CmaCh02G005330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 164..210 score: 8.5
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 165..209 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 165..210 score: 13
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 164..210 score: 0.
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 162..213 score: 9.9
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 147..213 score: 5.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 154..212 score: 1.24

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G005330	Cp4.1LG05g11580	Cucurbita pepo (Zucchini)	cmacpeB646

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G005330	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G005330	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G005330	Wild cucumber (PI 183967)	cmacpiB587
CmaCh02G005330	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G005330	Cucumber (Chinese Long) v2	cmacuB582
CmaCh02G005330	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G005330	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G005330	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G005330	Watermelon (Charleston Gray)	cmawcgB533
CmaCh02G005330	Watermelon (97103) v1	cmawmB570
CmaCh02G005330	Watermelon (97103) v1	cmawmB587
CmaCh02G005330	Bottle gourd (USVL1VR-Ls)	cmalsiB546
CmaCh02G005330	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G005330	Cucumber (Gy14) v2	cgybcmaB225
CmaCh02G005330	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G005330	Silver-seed gourd	carcmaB1466
CmaCh02G005330	Cucumber (Chinese Long) v3	cmacucB0697
CmaCh02G005330	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G005330	Watermelon (97103) v2	cmawmbB621
CmaCh02G005330	Wax gourd	cmawgoB0768
CmaCh02G005330	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G005330	Cucumber (Gy14) v1	cgycmaB0228