CmaCh02G004950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G004950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transposon Ty1-BR Gag-Pol polyprotein
Location	Cma_Chr02 : 2644637 .. 2645781 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGGCTGGTTGCGAAAGGAGTTTTAGAAGGTCCGAAATTTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAACAGAAACGAGTTAGTTTCACAAAGGCTGCAAGAGAACCGAAGAAAGTGCGGCTGGAAATGGTCCATACAAACGTCTGGGGACCATCTCCAGTTTCATCACTTGGTGAATCAAGGTACTACGTCACCTTCATCGATGACTTTAGCAGGAAGGTATGGGTTTACTTTCTGAAACACAAGTCAGATGTGTTTACCATCTTCAAGAAGTGGAAAGCTGAAGTTGAAAATCAGACTGACTTGAAGATTAAATGCCTGAGGTCTGACAATGGAGGAGAGTACAACAAATCAGAGTTTATAACATTTTGTGCAGTTGAGGGAATTAGATTAATAAGAACAATTTTCGGTAAGGCAAGACAAAATGGTATTGCAGAAAGAATGAACAGAACATTGAATGAGCGAGCAAGAAGCATGAGGATTCACTCTAGACTACCAAAGACATTCTGGGCTGATGCTGTGAACACAGCAGCATATTTGATTAATAGAGGGCCGTCAGTACCCTTGAAATTCAAATTGCCCGAAGAAGTATGGACAGGAAAAGAACTCAAGTACTCTCACTTGAGAACTTTTGGTTGTACTGTGTATGTTCATGTTGATCCAGAGAAGAGAGATAAGCTTGATGTTAAGGCTGTGAAATGCTACTTCATAGGCTATGGCTCTGACATGTTCGGATACAGATTTTGGGATGAGAAAAATATGAAAATCCTAAGACACTGCGATGTGACCTTTGATGAAAATGTCATGTACAAGGACAGAGAGAAGATAAACTTTGAGACTACAAAGAAGTGGAAGTTGAACTTGAGTGGCAGGAAAATTCACGCAGTGATGTTACAACTGAAGCTCAAGAAACTCATGATCCTATTGCTGAAGAACCAGACGTGGAGCAAGTTGCACCTAAGCAGGTGTTGAGAAGATCATCCAGAACTATCAGAGCACCAGATAGATATTCAGCCTCATTACATTATCTGTTGCTGACTGACGAAGGAGAACCAGAGTCCTTTGATGAGGCCCTACATGTGGAAGATTCAACCAAGTGGGAGCAAGCCATGGATGATGAGCTCACTTGA

mRNA sequence

ATGAAGAGGCTGGTTGCGAAAGGAGTTTTAGAAGGTCCGAAATTTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAACAGAAACGAGTTAGTTTCACAAAGGCTGCAAGAGAACCGAAGAAAGTGCGGCTGGAAATGGTCCATACAAACGTCTGGGGACCATCTCCAGTTTCATCACTTGGTGAATCAAGGTACTACGTCACCTTCATCGATGACTTTAGCAGGAAGGTATGGGTTTACTTTCTGAAACACAAGTCAGATGTGTTTACCATCTTCAAGAAGTGGAAAGCTGAAGTTGAAAATCAGACTGACTTGAAGATTAAATGCCTGAGGTCTGACAATGGAGGAGAGTACAACAAATCAGAGTTTATAACATTTTGTGCAGTTGAGGGAATTAGATTAATAAGAACAATTTTCGGTAAGGCAAGACAAAATGGTATTGCAGAAAGAATGAACAGAACATTGAATGAGCGAGCAAGAAGCATGAGGATTCACTCTAGACTACCAAAGACATTCTGGGCTGATGCTGTGAACACAGCAGCATATTTGATTAATAGAGGGCCGTCAGTACCCTTGAAATTCAAATTGCCCGAAGAAGTATGGACAGGAAAAGAACTCAAGTACTCTCACTTGAGAACTTTTGGTTGTACTGTGTATGTTCATGTTGATCCAGAGAAGAGAGATAAGCTTGATGTTAAGGCTGTGAAATGCTACTTCATAGGCTATGGCTCTGACATGTTCGGATACAGATTTTGGGATGAGAAAAATATGAAAATCCTAAGACACTGCGATGTGACCTTTGATGAAAATGTCATTGATGTTACAACTGAAGCTCAAGAAACTCATGATCCTATTGCTGAAGAACCAGACGTGGAGCAAGTTGCACCTAAGCAGGTGTTGAGAAGATCATCCAGAACTATCAGAGCACCAGATAGATATTCAGCCTCATTACATTATCTGTTGCTGACTGACGAAGGAGAACCAGAGTCCTTTGATGAGGCCCTACATGTGGAAGATTCAACCAAGTGGGAGCAAGCCATGGATGATGAGCTCACTTGA

Coding sequence (CDS)

ATGAAGAGGCTGGTTGCGAAAGGAGTTTTAGAAGGTCCGAAATTTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAACAGAAACGAGTTAGTTTCACAAAGGCTGCAAGAGAACCGAAGAAAGTGCGGCTGGAAATGGTCCATACAAACGTCTGGGGACCATCTCCAGTTTCATCACTTGGTGAATCAAGGTACTACGTCACCTTCATCGATGACTTTAGCAGGAAGGTATGGGTTTACTTTCTGAAACACAAGTCAGATGTGTTTACCATCTTCAAGAAGTGGAAAGCTGAAGTTGAAAATCAGACTGACTTGAAGATTAAATGCCTGAGGTCTGACAATGGAGGAGAGTACAACAAATCAGAGTTTATAACATTTTGTGCAGTTGAGGGAATTAGATTAATAAGAACAATTTTCGGTAAGGCAAGACAAAATGGTATTGCAGAAAGAATGAACAGAACATTGAATGAGCGAGCAAGAAGCATGAGGATTCACTCTAGACTACCAAAGACATTCTGGGCTGATGCTGTGAACACAGCAGCATATTTGATTAATAGAGGGCCGTCAGTACCCTTGAAATTCAAATTGCCCGAAGAAGTATGGACAGGAAAAGAACTCAAGTACTCTCACTTGAGAACTTTTGGTTGTACTGTGTATGTTCATGTTGATCCAGAGAAGAGAGATAAGCTTGATGTTAAGGCTGTGAAATGCTACTTCATAGGCTATGGCTCTGACATGTTCGGATACAGATTTTGGGATGAGAAAAATATGAAAATCCTAAGACACTGCGATGTGACCTTTGATGAAAATGTCATTGATGTTACAACTGAAGCTCAAGAAACTCATGATCCTATTGCTGAAGAACCAGACGTGGAGCAAGTTGCACCTAAGCAGGTGTTGAGAAGATCATCCAGAACTATCAGAGCACCAGATAGATATTCAGCCTCATTACATTATCTGTTGCTGACTGACGAAGGAGAACCAGAGTCCTTTGATGAGGCCCTACATGTGGAAGATTCAACCAAGTGGGAGCAAGCCATGGATGATGAGCTCACTTGA

Protein sequence

MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVSSLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEYNKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCYFIGYGSDMFGYRFWDEKNMKILRHCDVTFDENVIDVTTEAQETHDPIAEEPDVEQVAPKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPESFDEALHVEDSTKWEQAMDDELT

Homology

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BLAST of CmaCh02G004950 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 1.3e-79
Identity = 166/397 (41.81%), Postives = 228/397 (57.43%), Query Frame = 1


Query: 4   LVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVSSLG 63
           L  K ++   K   V  C+  + GKQ RVSF + + E K   L++V+++V GP  + S+G
Sbjct: 440 LAKKSLISYAKGTTVKPCDYCLFGKQHRVSF-QTSSERKLNILDLVYSDVCGPMEIESMG 499

Query: 64  ESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEYNKS 123
            ++Y+VTFIDD SRK+WVY LK K  VF +F+K+ A VE +T  K+K LRSDNGGEY   
Sbjct: 500 GNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSR 559

Query: 124 EFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVNTAA 183
           EF  +C+  GIR  +T+ G  + NG+AERMNRT+ E+ RSM   ++LPK+FW +AV TA 
Sbjct: 560 EFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTAC 619

Query: 184 YLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCYFIG 243
           YLINR PSVPL F++PE VWT KE+ YSHL+ FGC  + HV  E+R KLD K++ C FIG
Sbjct: 620 YLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIG 679

Query: 244 YGSDMFGYRFWDEKNMKILRHCDVTFDENVIDVT-------------------------T 303
           YG + FGYR WD    K++R  DV F E+ +                            T
Sbjct: 680 YGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPT 739

Query: 304 EAQETHDPIAEEPD---------------VEQVA-------PKQVLRRSSRTIRAPDRYS 354
            A+ T D ++E+ +               VE+V          Q LRRS R  R   R  
Sbjct: 740 SAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERP-RVESRRY 799

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BLAST of CmaCh02G004950 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-44
Identity = 103/255 (40.39%), Postives = 149/255 (58.43%), Query Frame = 1


Query: 21  CENYVMGKQKRVSFTKAAREPKKVR--LEMVHTNVWGPSPVSSLGESRYYVTFIDDFSRK 80
           CE  + GKQ R+ F K  ++   ++  L +VH++V GP    +L +  Y+V F+D F+  
Sbjct: 455 CEPCLNGKQARLPF-KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHY 514

Query: 81  VWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEYNKSEFITFCAVEGIRLIR 140
              Y +K+KSDVF++F+ + A+ E   +LK+  L  DNG EY  +E   FC  +GI    
Sbjct: 515 CVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHL 574

Query: 141 TIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPL--KF 200
           T+    + NG++ERM RT+ E+AR+M   ++L K+FW +AV TA YLINR PS  L    
Sbjct: 575 TVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSS 634

Query: 201 KLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCYFIGYGSDMFGYRFWDE 260
           K P E+W  K+    HLR FG TVYVH+   K+ K D K+ K  F+GY  +  G++ WD 
Sbjct: 635 KTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDA 694

Query: 261 KNMKILRHCDVTFDE 272
            N K +   DV  DE
Sbjct: 695 VNEKFIVARDVVVDE 705

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BLAST of CmaCh02G004950 vs. Swiss-Prot
Match: M710_ARATH (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-15
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 153 MNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPLKFKLPEEVWTGKELKYSH 212
           MNRT+ E+ RSM     LPKTF ADA NTA ++IN+ PS  + F +P+EVW      YS+
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 213 LRTFGCTVYVHVDPEK 229
           LR FGC  Y+H D  K
Sbjct: 61  LRRFGCVAYIHCDEGK 76

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BLAST of CmaCh02G004950 vs. Swiss-Prot
Match: YG21B_YEAST (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 2.8e-15
Identity = 66/272 (24.26%), Postives = 117/272 (43.01%), Query Frame = 1


Query: 20  RCENYVMGKQKRVSFTKAAR---EPKKVRLEMVHTNVWGPSPVSSLGESRYYVTFIDDFS 79
           +C + ++GK  +    K +R   +      + +HT+++GP          Y+++F D+ +
Sbjct: 632 QCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKT 691

Query: 80  RKVWVYFL--KHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEYNKSEFITFCAVEGI 139
           R  WVY L  + +  +  +F    A ++NQ + ++  ++ D G EY       F    GI
Sbjct: 692 RFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

Query: 140 RLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPL 199
               T    +R +G+AER+NRTL    R++   S LP   W  AV  +  + N   S P 
Sbjct: 752 TACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS-PK 811

Query: 200 KFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCYFIGYGSDMFGYRFW 259
           K K   +      L  + +  FG  V V+ +     K+  + +  Y +    + +GY  +
Sbjct: 812 KRKSARQHAGLAGLDITTILPFGQPVIVN-NHNPDSKIHPRGIPGYALHPSRNSYGYIIY 871

Query: 260 --------DEKNMKILRHCDVTFDENVIDVTT 279
                   D  N  IL++     D+   D  T
Sbjct: 872 LPSLKKTVDTTNYVILQNKQTKLDQFDYDTLT 901

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BLAST of CmaCh02G004950 vs. Swiss-Prot
Match: YD22B_YEAST (Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-14
Identity = 65/272 (23.90%), Postives = 116/272 (42.65%), Query Frame = 1


Query: 20  RCENYVMGKQKRVSFTKAAR---EPKKVRLEMVHTNVWGPSPVSSLGESRYYVTFIDDFS 79
           +C + ++GK  +    K +R   +      + +HT+++GP          Y+++F D+ +
Sbjct: 632 QCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKT 691

Query: 80  RKVWVYFL--KHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEYNKSEFITFCAVEGI 139
           R  WVY L  + +  +  +F    A ++NQ + ++  ++ D G EY       F    GI
Sbjct: 692 RFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGI 751

Query: 140 RLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPL 199
               T    +R +G+AER+NRTL    R++   S LP   W  AV  +  + N   S P 
Sbjct: 752 TACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS-PK 811

Query: 200 KFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCYFIGYGSDMFGYRFW 259
             K   +      L  + +  FG  V V+ +     K+  + +  Y +    + +GY  +
Sbjct: 812 NDKSARQHAGLAGLDITTILPFGQPVIVN-NHNPDSKIHPRGIPGYALHPSRNSYGYIIY 871

Query: 260 --------DEKNMKILRHCDVTFDENVIDVTT 279
                   D  N  IL++     D+   D  T
Sbjct: 872 LPSLKKTVDTTNYVILQNNQTKLDQFDYDTLT 901

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BLAST of CmaCh02G004950 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 6.8e-125
Identity = 225/378 (59.52%), Postives = 274/378 (72.49%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK +  KG L   K VDVG CE+ ++GKQ+++SF++  +  K  RLE+VHT+VWGP+PV 
Sbjct: 408 MKLMATKGKLSKLKHVDVGTCEHCILGKQRKISFSRQGKTLKTERLELVHTDVWGPAPVK 467

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG S YYVTFIDD +RKVWVYFLK+KSDVF++FK+WK EVENQT LK+K L+SDNGGEY
Sbjct: 468 SLGGSCYYVTFIDDATRKVWVYFLKNKSDVFSVFKRWKTEVENQTGLKLKSLKSDNGGEY 527

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
           N  EF  FC+  GIR+I+TI G   QNG+AERMNRTLNERAR MRI S LPK FWADA+N
Sbjct: 528 NSHEFKNFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKVFWADAIN 587

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVPL ++LPEEVW+GKE+  SHLR FGC  YV +D + RDKLD KA KCY
Sbjct: 588 TAAYLINRGPSVPLGYQLPEEVWSGKEVNLSHLRVFGCVSYVLIDSDSRDKLDPKAKKCY 647

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENV------------------------IDV 300
           FIGYGSDM+GYRFWD++N KI+R  +VTF+EN+                        ++ 
Sbjct: 648 FIGYGSDMYGYRFWDDQNKKIIRSRNVTFNENLFYKDRFSAESIDTDKLPEPSEKVELEE 707

Query: 301 TTEAQETHDPIAEEPDVEQVAPKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPESFDEA 355
            +E+  T+   + + +VE       LRRS R   AP+RYS SLHYLLLTD GEPE FDEA
Sbjct: 708 ISESDITNRSQSTDIEVESEPASPPLRRSCRVSVAPERYSPSLHYLLLTDAGEPEYFDEA 767

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BLAST of CmaCh02G004950 vs. TrEMBL
Match: A5AS37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032634 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 3.2e-122
Identity = 224/381 (58.79%), Postives = 275/381 (72.18%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 427 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 486

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 487 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 546

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 547 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 606

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 607 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 666

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENV-----IDVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V     + VT+   E     +E      
Sbjct: 667 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRLTVTSXVTEIDQKKSEFVNLDE 726

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR IR P RYS  L+YLLLTD GEPE 
Sbjct: 727 LTESTVQKRGEEDKENVNSKVDLRTPVVEVRRSSRNIRPPQRYSPVLNYLLLTDGGEPEC 786

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BLAST of CmaCh02G004950 vs. TrEMBL
Match: A5CBM1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001479 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 7.1e-122
Identity = 223/381 (58.53%), Postives = 274/381 (71.92%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 399 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 458

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWK  VE +T LK+KCLRSDNGGEY
Sbjct: 459 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEY 518

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 519 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 578

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 579 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 638

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENVI-----DVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V+      VT++  E     +E      
Sbjct: 639 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDE 698

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR  R P RYS  L+YLLLTD GEPE 
Sbjct: 699 LTESTVQKGGEEDKENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPEC 758

[Close]

BLAST of CmaCh02G004950 vs. TrEMBL
Match: A5B5N4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005765 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 3.5e-121
Identity = 222/381 (58.27%), Postives = 274/381 (71.92%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 390 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 449

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFI+D SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 450 SLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 509

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +C  +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 510 IDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 569

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 570 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 629

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENVI-----DVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V+      VT++  E     +E      
Sbjct: 630 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDE 689

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR  R P RYS  L+YLLLTD GEPE 
Sbjct: 690 LTESTVQKGGEEDKENVNSQVDLSTPIVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPEC 749

[Close]

BLAST of CmaCh02G004950 vs. TrEMBL
Match: A5C844_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044399 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.7e-120
Identity = 216/362 (59.67%), Postives = 266/362 (73.48%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 427 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 486

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 487 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 546

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 547 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 606

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW GKE+K+SHL+ FGC  YVH+D + R KLD  +  C+
Sbjct: 607 TAAYLINRGPSVPMEFRLPEEVWNGKEVKFSHLKVFGCVSYVHIDSDARSKLDAXSKICF 666

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCD---------VTFDENVIDVTTEAQETHDPIAEEP 300
           FIGYG + FGYRFWDE+  KI+R+           V  DE + + T +     D      
Sbjct: 667 FIGYGDEKFGYRFWDEQXRKIIRNVTEIDQKKSEFVNLDE-LTESTVQKGGEXDKENVNS 726

Query: 301 DVEQVAPKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPESFDEALHVEDSTKWEQAMDD 354
            V+   P   +RRSSR IR P RYS  L+YLLLTD GEPE ++EAL  E+S+KWE AM D
Sbjct: 727 QVDLSTPVXEVRRSSRNIRPPQRYSPVLNYLLLTDGGEPECYBEALQDENSSKWELAMKD 786

[Close]

BLAST of CmaCh02G004950 vs. TAIR10
Match: ATMG00710.1 (ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 7.2e-17
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 153 MNRTLNERARSMRIHSRLPKTFWADAVNTAAYLINRGPSVPLKFKLPEEVWTGKELKYSH 212
           MNRT+ E+ RSM     LPKTF ADA NTA ++IN+ PS  + F +P+EVW      YS+
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 213 LRTFGCTVYVHVDPEK 229
           LR FGC  Y+H D  K
Sbjct: 61  LRRFGCVAYIHCDEGK 76

[Close]

BLAST of CmaCh02G004950 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 455.3 bits (1170), Expect = 9.8e-125
Identity = 225/378 (59.52%), Postives = 274/378 (72.49%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK +  KG L   K VDVG CE+ ++GKQ+++SF++  +  K  RLE+VHT+VWGP+PV 
Sbjct: 408 MKLMATKGKLSKLKHVDVGTCEHCILGKQRKISFSRQGKTLKTERLELVHTDVWGPAPVK 467

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG S YYVTFIDD +RKVWVYFLK+KSDVF++FK+WK EVENQT LK+K L+SDNGGEY
Sbjct: 468 SLGGSCYYVTFIDDATRKVWVYFLKNKSDVFSVFKRWKTEVENQTGLKLKSLKSDNGGEY 527

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
           N  EF  FC+  GIR+I+TI G   QNG+AERMNRTLNERAR MRI S LPK FWADA+N
Sbjct: 528 NSHEFKNFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKVFWADAIN 587

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVPL ++LPEEVW+GKE+  SHLR FGC  YV +D + RDKLD KA KCY
Sbjct: 588 TAAYLINRGPSVPLGYQLPEEVWSGKEVNLSHLRVFGCVSYVLIDSDSRDKLDPKAKKCY 647

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENV------------------------IDV 300
           FIGYGSDM+GYRFWD++N KI+R  +VTF+EN+                        ++ 
Sbjct: 648 FIGYGSDMYGYRFWDDQNKKIIRSRNVTFNENLFYKDRFSAESIDTDKLPEPSEKVELEE 707

Query: 301 TTEAQETHDPIAEEPDVEQVAPKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPESFDEA 355
            +E+  T+   + + +VE       LRRS R   AP+RYS SLHYLLLTD GEPE FDEA
Sbjct: 708 ISESDITNRSQSTDIEVESEPASPPLRRSCRVSVAPERYSPSLHYLLLTDAGEPEYFDEA 767

[Close]

BLAST of CmaCh02G004950 vs. NCBI nr
Match: gi|147788024|emb|CAN69340.1| (hypothetical protein VITISV_032634 [Vitis vinifera])

HSP 1 Score: 446.4 bits (1147), Expect = 4.5e-122
Identity = 224/381 (58.79%), Postives = 275/381 (72.18%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 427 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 486

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 487 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 546

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 547 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 606

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 607 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 666

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENV-----IDVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V     + VT+   E     +E      
Sbjct: 667 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRLTVTSXVTEIDQKKSEFVNLDE 726

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR IR P RYS  L+YLLLTD GEPE 
Sbjct: 727 LTESTVQKRGEEDKENVNSKVDLRTPVVEVRRSSRNIRPPQRYSPVLNYLLLTDGGEPEC 786

[Close]

BLAST of CmaCh02G004950 vs. NCBI nr
Match: gi|147828211|emb|CAN71109.1| (hypothetical protein VITISV_001479 [Vitis vinifera])

HSP 1 Score: 445.3 bits (1144), Expect = 1.0e-121
Identity = 223/381 (58.53%), Postives = 274/381 (71.92%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 399 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 458

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWK  VE +T LK+KCLRSDNGGEY
Sbjct: 459 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKXMVETETGLKVKCLRSDNGGEY 518

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 519 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 578

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 579 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 638

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENVI-----DVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V+      VT++  E     +E      
Sbjct: 639 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDE 698

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR  R P RYS  L+YLLLTD GEPE 
Sbjct: 699 LTESTVQKGGEEDKENVNSQVDLSTPVVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPEC 758

[Close]

BLAST of CmaCh02G004950 vs. NCBI nr
Match: gi|147773621|emb|CAN74198.1| (hypothetical protein VITISV_005765 [Vitis vinifera])

HSP 1 Score: 443.0 bits (1138), Expect = 5.0e-121
Identity = 222/381 (58.27%), Postives = 274/381 (71.92%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 390 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 449

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFI+D SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 450 SLGGSRYYITFINDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 509

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +C  +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 510 IDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 569

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW+GKE+K+SHL+ FGC  YVH+D + R KLD K+  C+
Sbjct: 570 TAAYLINRGPSVPMEFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICF 629

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCDVTFDENVI-----DVTTEAQETHDPIAE------ 300
           FIGYG + FGYRFWDE+N KI+R  +V F+E V+      VT++  E     +E      
Sbjct: 630 FIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVTSDVTEIDQKKSEFVNLDE 689

Query: 301 ----------EPDVEQV-------APKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPES 354
                     E D E V        P   +RRSSR  R P RYS  L+YLLLTD GEPE 
Sbjct: 690 LTESTVQKGGEEDKENVNSQVDLSTPIVEVRRSSRNTRPPQRYSPVLNYLLLTDGGEPEC 749

[Close]

BLAST of CmaCh02G004950 vs. NCBI nr
Match: gi|147827119|emb|CAN62181.1| (hypothetical protein VITISV_044399 [Vitis vinifera])

HSP 1 Score: 440.7 bits (1132), Expect = 2.5e-120
Identity = 216/362 (59.67%), Postives = 266/362 (73.48%), Query Frame = 1


Query: 1   MKRLVAKGVLEGPKFVDVGRCENYVMGKQKRVSFTKAAREPKKVRLEMVHTNVWGPSPVS 60
           MK L++KG L   K +D   CE+ ++GKQK+VSF K  R PK  +LE+VHT++WGPSPV+
Sbjct: 427 MKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLELVHTDLWGPSPVA 486

Query: 61  SLGESRYYVTFIDDFSRKVWVYFLKHKSDVFTIFKKWKAEVENQTDLKIKCLRSDNGGEY 120
           SLG SRYY+TFIDD SRKVWVYFLK+KSDVF  FKKWKA VE +T LK+KCLRSDNGGEY
Sbjct: 487 SLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEY 546

Query: 121 NKSEFITFCAVEGIRLIRTIFGKARQNGIAERMNRTLNERARSMRIHSRLPKTFWADAVN 180
               F  +CA +GIR+ +TI G  +QNG+AERMNRTLNERARSMR+H+ LPKTFWADAV+
Sbjct: 547 IDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERARSMRLHAGLPKTFWADAVS 606

Query: 181 TAAYLINRGPSVPLKFKLPEEVWTGKELKYSHLRTFGCTVYVHVDPEKRDKLDVKAVKCY 240
           TAAYLINRGPSVP++F+LPEEVW GKE+K+SHL+ FGC  YVH+D + R KLD  +  C+
Sbjct: 607 TAAYLINRGPSVPMEFRLPEEVWNGKEVKFSHLKVFGCVSYVHIDSDARSKLDAXSKICF 666

Query: 241 FIGYGSDMFGYRFWDEKNMKILRHCD---------VTFDENVIDVTTEAQETHDPIAEEP 300
           FIGYG + FGYRFWDE+  KI+R+           V  DE + + T +     D      
Sbjct: 667 FIGYGDEKFGYRFWDEQXRKIIRNVTEIDQKKSEFVNLDE-LTESTVQKGGEXDKENVNS 726

Query: 301 DVEQVAPKQVLRRSSRTIRAPDRYSASLHYLLLTDEGEPESFDEALHVEDSTKWEQAMDD 354
            V+   P   +RRSSR IR P RYS  L+YLLLTD GEPE ++EAL  E+S+KWE AM D
Sbjct: 727 QVDLSTPVXEVRRSSRNIRPPQRYSPVLNYLLLTDGGEPECYBEALQDENSSKWELAMKD 786

The following BLAST results are available for this feature:

BLAST of CmaCh02G004950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.3e-79	41.81	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	2.9e-44	40.39	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M710_ARATH	1.3e-15	51.32	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana GN=AtMg0...	[more]
YG21B_YEAST	2.8e-15	24.26	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YD22B_YEAST	1.1e-14	23.90	Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CmaCh02G004950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151TNK0_CAJCA	6.8e-125	59.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5AS37_VITVI	3.2e-122	58.79	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032634 PE=4 SV=1	[more]
A5CBM1_VITVI	7.1e-122	58.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001479 PE=4 SV=1	[more]
A5B5N4_VITVI	3.5e-121	58.27	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005765 PE=4 SV=1	[more]
A5C844_VITVI	1.7e-120	59.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044399 PE=4 SV=1	[more]

BLAST of CmaCh02G004950 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00710.1	7.2e-17	51.32	ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of CmaCh02G004950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012357422\|gb\|KYP68607.1\|	9.8e-125	59.52	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|147788024\|emb\|CAN69340.1\|	4.5e-122	58.79	hypothetical protein VITISV_032634 [Vitis vinifera]	[more]
gi\|147828211\|emb\|CAN71109.1\|	1.0e-121	58.53	hypothetical protein VITISV_001479 [Vitis vinifera]	[more]
gi\|147773621\|emb\|CAN74198.1\|	5.0e-121	58.27	hypothetical protein VITISV_005765 [Vitis vinifera]	[more]
gi\|147827119\|emb\|CAN62181.1\|	2.5e-120	59.67	hypothetical protein VITISV_044399 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G004950.1	CmaCh02G004950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 47..160 score: 3.4
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 37..207 score: 20
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 46..197 score: 4.4
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 46..201 score: 4.86
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 25..353 score: 5.7E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G004950	Wild cucumber (PI 183967)	cmacpiB595
CmaCh02G004950	Wild cucumber (PI 183967)	cmacpiB631
CmaCh02G004950	Cucumber (Chinese Long) v2	cmacuB590
CmaCh02G004950	Cucumber (Chinese Long) v2	cmacuB626
CmaCh02G004950	Melon (DHL92) v3.5.1	cmameB534
CmaCh02G004950	Melon (DHL92) v3.5.1	cmameB584
CmaCh02G004950	Watermelon (Charleston Gray)	cmawcgB520
CmaCh02G004950	Watermelon (Charleston Gray)	cmawcgB530
CmaCh02G004950	Watermelon (97103) v1	cmawmB570
CmaCh02G004950	Watermelon (97103) v1	cmawmB595
CmaCh02G004950	Cucurbita pepo (Zucchini)	cmacpeB626
CmaCh02G004950	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G004950	Bottle gourd (USVL1VR-Ls)	cmalsiB548
CmaCh02G004950	Bottle gourd (USVL1VR-Ls)	cmalsiB567
CmaCh02G004950	Cucumber (Gy14) v2	cgybcmaB231
CmaCh02G004950	Cucumber (Gy14) v2	cgybcmaB816
CmaCh02G004950	Melon (DHL92) v3.6.1	cmamedB616
CmaCh02G004950	Silver-seed gourd	carcmaB0573
CmaCh02G004950	Silver-seed gourd	carcmaB1309
CmaCh02G004950	Cucumber (Chinese Long) v3	cmacucB0703
CmaCh02G004950	Cucumber (Chinese Long) v3	cmacucB0748
CmaCh02G004950	Watermelon (97103) v2	cmawmbB617
CmaCh02G004950	Wax gourd	cmawgoB0768
CmaCh02G004950	Wax gourd	cmawgoB0755
CmaCh02G004950	Wax gourd	cmawgoB0759
CmaCh02G004950	Cucurbita maxima (Rimu)	cmacmaB469
CmaCh02G004950	Cucumber (Gy14) v1	cgycmaB0228
CmaCh02G004950	Cucumber (Gy14) v1	cgycmaB0118
CmaCh02G004950	Cucurbita moschata (Rifu)	cmacmoB606
CmaCh02G004950	Cucurbita moschata (Rifu)	cmacmoB619