CmaCh02G004710 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G004710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransmembrane protein, putative
LocationCma_Chr02 : 2469904 .. 2470274 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCTAGATCACTCCCTTATTACTATTTTGTAGGAATGAAAAACGTGGTACATGAAGAAACCAGAACCAACGCAAGCTTCTTCTACTTAGCGCCCACAAATATTGCCCAAACTCTCATTATTGGGCTTTTTCTAAACCAGATACACAAGATTTCTTGCCCGAATCATCTATTGGAGCTATCAAGCAGTCTAGTTTGAGCCTTGGTGAGGGTCACAACTTCAGTGATGCCAACGCTCTTGGCGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACTTAGTTGTCGATGCCGGTACTCTTGGTAATGTCAAAGAATCTGGCACCATCTCTGGCGGTGGTGGCCATCATCAATGTTGTTAA

mRNA sequence

ATGGTGCCTAGATCACTCCCTTATTACTATTTTGTAGGAATGAAAAACGTGAACCAACGCAAGCTTCTTCTACTTAGCGCCCACAAATATTGCCCAAACTCTCATTATTGGGCTTTTTCTAAACCAGATACACAAGATTTCTTGCCCGAATCATCTATTGGAGCTATCAAGCAGTCTAGTTTGAGCCTTGGTGAGGGTCACAACTTCAGTGATGCCAACGCTCTTGGCGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACTTAGTTGTCGATGCCGGTACTCTTGGTAATGTCAAAGAATCTGGCACCATCTCTGGCGGTGGTGGCCATCATCAATGTTGTTAA

Coding sequence (CDS)

ATGGTGCCTAGATCACTCCCTTATTACTATTTTGTAGGAATGAAAAACGTGAACCAACGCAAGCTTCTTCTACTTAGCGCCCACAAATATTGCCCAAACTCTCATTATTGGGCTTTTTCTAAACCAGATACACAAGATTTCTTGCCCGAATCATCTATTGGAGCTATCAAGCAGTCTAGTTTGAGCCTTGGTGAGGGTCACAACTTCAGTGATGCCAACGCTCTTGGCGGTATCAAGGACTCCAGCTCGAGTTCCAACGTTGGCCATAACTTAGTTGTCGATGCCGGTACTCTTGGTAATGTCAAAGAATCTGGCACCATCTCTGGCGGTGGTGGCCATCATCAATGTTGTTAA

Protein sequence

MVPRSLPYYYFVGMKNVNQRKLLLLSAHKYCPNSHYWAFSKPDTQDFLPESSIGAIKQSSLSLGEGHNFSDANALGGIKDSSSSSNVGHNLVVDAGTLGNVKESGTISGGGGHHQCC
Homology
[Close]
BLAST of CmaCh02G004710 vs. TrEMBL
Match: A5AV37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011346 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-06
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 43  DTQDFLPESSIGAIKQSSLSLGEGHNFSDANALGGIKDSSSSSNVGHNLVVDAGTLGNVK 102
           + + F    S+GAIKQS  S G GH F++A  LGGIKDS  S   GH    +AGTLG +K
Sbjct: 40  EMRGFFDGLSLGAIKQSGPSPGNGHKFTNAGTLGGIKDSGPSPGNGHKF-TNAGTLGGIK 99

Query: 103 ESGTISGGG 112
           +SG   G G
Sbjct: 100 DSGPNPGEG 107

[Close]
BLAST of CmaCh02G004710 vs. NCBI nr
Match: gi|147772598|emb|CAN62855.1| (hypothetical protein VITISV_011346 [Vitis vinifera])

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1 

Query: 43  DTQDFLPESSIGAIKQSSLSLGEGHNFSDANALGGIKDSSSSSNVGHNLVVDAGTLGNVK 102
           + + F    S+GAIKQS  S G GH F++A  LGGIKDS  S   GH    +AGTLG +K
Sbjct: 40  EMRGFFDGLSLGAIKQSGPSPGNGHKFTNAGTLGGIKDSGPSPGNGHKF-TNAGTLGGIK 99

Query: 103 ESGTISGGG 112
           +SG   G G
Sbjct: 100 DSGPNPGEG 107

The following BLAST results are available for this feature:
BLAST of CmaCh02G004710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G004710 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AV37_VITVI4.7e-0649.28Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011346 PE=4 SV=1[more]
BLAST of CmaCh02G004710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G004710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147772598|emb|CAN62855.1|6.7e-0649.28hypothetical protein VITISV_011346 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G004710.1CmaCh02G004710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G004710CmoCh02G004760Cucurbita moschata (Rifu)cmacmoB619
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G004710Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G004710Cucumber (Gy14) v1cgycmaB0735
CmaCh02G004710Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G004710Wild cucumber (PI 183967)cmacpiB595
CmaCh02G004710Cucumber (Chinese Long) v2cmacuB590
CmaCh02G004710Melon (DHL92) v3.5.1cmameB534
CmaCh02G004710Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G004710Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G004710Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G004710Cucumber (Gy14) v2cgybcmaB231
CmaCh02G004710Melon (DHL92) v3.6.1cmamedB614
CmaCh02G004710Melon (DHL92) v3.6.1cmamedB616
CmaCh02G004710Silver-seed gourdcarcmaB1460
CmaCh02G004710Cucumber (Chinese Long) v3cmacucB0703