CmaCh02G003360 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G003360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr02 : 1665733 .. 1667021 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATTCACCAACTCATTTGCATTCCAAAAGGTATGAGATTGCATTTCTACCCAACATTTGAGCAGGAGTTACAAAGAATACAAGTTAGGAGAAACAATGTGCTGAAATTGATTAATGGCTATAAAATCATCTTCATCCTTCAAGAGTGTCGTAATCTAGATGTAAGATCGAAGGCGTCGTCTTTGCAAGGAATTGTGAGACCTCCTTGTTCTACTCGGTTGAGTAGCTAATCATCTTTTATCTTGTTGTAATTTAGAAGTAAGATCAATGAAGGCGCCCTCTTTGCAAGGAATTGTGAGGCCTCCTTGTTGATGATGGTAACTGAACTCTTCTTCTACTCGGTTGAGTAGTTCTTGAAATGAGGGATGAACCCGACATCTCTCACATATACTACAACATGACCGCTAAGGACAACATCTGACTGCCTTTTGGTAAATCCCAGCTGCATCTTGAGAATTTGCTACGAATCCCCCCATTATCAAATCTACTTTCAATGGTCAAGAGACCATAAAAAAATCTGAAGTTTAGCCTTGATTGGCGTCAAAGAAGTTGGAAGCGGGTCCTAGAATATCAGGGTTCAATCTAGTAATTGAAACTCCTTTGGGTTCTATACTTATATAGTTATGAAAAAAGAAATAGCCTGGGTATTTTCAATGAGTTTTAAAAGTGGGCCTCTTTCTACAACTGAGAGGACCCACGTCAATGACTTTGTCAGCTCACAAGAATTTTCTATTTCCATCTCATCCTTTTCCTTGGCTCCCATATGAGTTTGATATGTGATTCACAAGTTGCTAAACTATAGGCCCAATTGTAGTTCAATTTCCAAACCACATCATGCTTGTTCCAGTGGAATAACACATCAAAACAGATGGCTTTGTAAGGAAAAGGTAAAAACAAGCCAACATATACCTGTGATTGGACCTCCTTGCAAGAAGAAATCGCTTCATCATTGGACCCAGCTTCTAGGCAAGGGAAGTCACTTCACATGTACCAAATGCTTTAAATCATATCATATCAACATCTCAGCTTTCATTTGATTCACAGCTTGGTTTGTTGAGTTAATGGATATGATGTGCACCAGTGTTTTCCCAGCCACTGGACTAGGTCCACTAAAGAAGCACTTAATGAGGATTGGAGAGTATCACACGGTATGTTGCTACTCATCTTCCAAGATATTGACGAACTTGGTGAAATTTTATTGGCCGCTTATTACTGGAAAAAGTGGGATCAGAGAGGAATGATTAAAATTTTAATGGATAGAGCAAACCCATGTGAACCTTTGGAGAAG

mRNA sequence

GAAATTCACCAACTCATTTGCATTCCAAAAGAAGTAAGATCAATGAAGGCGCCCTCTTTGCAAGGAATTGTGAGGCCTCCTTGTTGATGATGTTGCTAAACTATAGGCCCAATTGTAGTTCAATTTCCAAACCACATCATGCTTGTTCCAGTGGAATAACACATCAAAACAGATGGCTTTGTAAGGAAAAGGTAAAAACAAGCCAACATATACCTGTGATTGGACCTCCTTGCAAGAAGAAATCGCTTCATCATTGGACCCAGCTTCTAGGCAAGGGAATTAATGGATATGATGTGCACCAGTGTTTTCCCAGCCACTGGACTAGGTCCACTAAAGAAGCACTTAATGAGGATTGGAGAGTATCACACGGTATGTTGCTACTCATCTTCCAAGATATTGACGAACTTGGTGAAATTTTATTGGCCGCTTATTACTGGAAAAAGTGGGATCAGAGAGGAATGATTAAAATTTTAATGGATAGAGCAAACCCATGTGAACCTTTGGAGAAG

Coding sequence (CDS)

ATGATGTTGCTAAACTATAGGCCCAATTGTAGTTCAATTTCCAAACCACATCATGCTTGTTCCAGTGGAATAACACATCAAAACAGATGGCTTTGTAAGGAAAAGGTAAAAACAAGCCAACATATACCTGTGATTGGACCTCCTTGCAAGAAGAAATCGCTTCATCATTGGACCCAGCTTCTAGGCAAGGGAATTAATGGATATGATGTGCACCAGTGTTTTCCCAGCCACTGGACTAGGTCCACTAAAGAAGCACTTAATGAGGATTGGAGAGTATCACACGGTATGTTGCTACTCATCTTCCAAGATATTGACGAACTTGGTGAAATTTTATTGGCCGCTTATTACTGGAAAAAGTGGGATCAGAGAGGAATGATTAAAATTTTAATGGATAGAGCAAACCCATGTGAACCTTTGGAGAAG

Protein sequence

MMLLNYRPNCSSISKPHHACSSGITHQNRWLCKEKVKTSQHIPVIGPPCKKKSLHHWTQLLGKGINGYDVHQCFPSHWTRSTKEALNEDWRVSHGMLLLIFQDIDELGEILLAAYYWKKWDQRGMIKILMDRANPCEPLEK
Homology
[Close]
BLAST of CmaCh02G003360 vs. TrEMBL
Match: A0A0A0LJ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.6e-14
Identity = 48/109 (44.04%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 35  KVKTSQHIPVIGPPCKKKSLHHWTQLLGKGINGYDVHQC--FPSHWTRSTKEALNEDWRV 94
           K KTSQHI VIGPPCK+K LH WT+L    +N Y VHQC    SH   ST   L      
Sbjct: 17  KRKTSQHILVIGPPCKRKLLHQWTKL---PVNAYPVHQCTLSLSHCNISTNSGLILSIGE 76

Query: 95  SHGMLLLIFQDIDELGEILLAAYYWKKWDQRGMIKILMDRANPCEPLEK 142
            H    L+        +      YWK W    + +I+MDRA PCEPL+K
Sbjct: 77  YHMACCLV--------KFSSPLCYWKSWASEKVTEIIMDRAIPCEPLKK 114

[Close]
BLAST of CmaCh02G003360 vs. NCBI nr
Match: gi|700206766|gb|KGN61885.1| (hypothetical protein Csa_2G258810 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-13
Identity = 48/109 (44.04%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 35  KVKTSQHIPVIGPPCKKKSLHHWTQLLGKGINGYDVHQC--FPSHWTRSTKEALNEDWRV 94
           K KTSQHI VIGPPCK+K LH WT+L    +N Y VHQC    SH   ST   L      
Sbjct: 17  KRKTSQHILVIGPPCKRKLLHQWTKL---PVNAYPVHQCTLSLSHCNISTNSGLILSIGE 76

Query: 95  SHGMLLLIFQDIDELGEILLAAYYWKKWDQRGMIKILMDRANPCEPLEK 142
            H    L+        +      YWK W    + +I+MDRA PCEPL+K
Sbjct: 77  YHMACCLV--------KFSSPLCYWKSWASEKVTEIIMDRAIPCEPLKK 114

The following BLAST results are available for this feature:
BLAST of CmaCh02G003360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh02G003360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ03_CUCSA9.6e-1444.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1[more]
BLAST of CmaCh02G003360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh02G003360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206766|gb|KGN61885.1|1.4e-1344.04hypothetical protein Csa_2G258810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G003360.1CmaCh02G003360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G003360Cp4.1LG05g13000Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G003360CsaV3_2G015590Cucumber (Chinese Long) v3cmacucB0701
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G003360Silver-seed gourdcarcmaB0442
CmaCh02G003360Cucumber (Chinese Long) v3cmacucB0724
CmaCh02G003360Cucumber (Chinese Long) v3cmacucB0769
CmaCh02G003360Watermelon (97103) v2cmawmbB608
CmaCh02G003360Watermelon (97103) v2cmawmbB613
CmaCh02G003360Wax gourdcmawgoB0734
CmaCh02G003360Wax gourdcmawgoB0745
CmaCh02G003360Wax gourdcmawgoB0767
CmaCh02G003360Cucurbita maxima (Rimu)cmacmaB469
CmaCh02G003360Cucurbita maxima (Rimu)cmacmaB452
CmaCh02G003360Cucumber (Gy14) v1cgycmaB0480
CmaCh02G003360Cucumber (Gy14) v1cgycmaB1053
CmaCh02G003360Cucurbita moschata (Rifu)cmacmoB599
CmaCh02G003360Cucurbita moschata (Rifu)cmacmoB606
CmaCh02G003360Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G003360Wild cucumber (PI 183967)cmacpiB593
CmaCh02G003360Wild cucumber (PI 183967)cmacpiB651
CmaCh02G003360Cucumber (Chinese Long) v2cmacuB588
CmaCh02G003360Cucumber (Chinese Long) v2cmacuB644
CmaCh02G003360Melon (DHL92) v3.5.1cmameB537
CmaCh02G003360Melon (DHL92) v3.5.1cmameB563
CmaCh02G003360Watermelon (Charleston Gray)cmawcgB517
CmaCh02G003360Watermelon (Charleston Gray)cmawcgB531
CmaCh02G003360Watermelon (97103) v1cmawmB586
CmaCh02G003360Watermelon (97103) v1cmawmB610
CmaCh02G003360Cucurbita pepo (Zucchini)cmacpeB616
CmaCh02G003360Cucurbita pepo (Zucchini)cmacpeB626
CmaCh02G003360Bottle gourd (USVL1VR-Ls)cmalsiB548
CmaCh02G003360Bottle gourd (USVL1VR-Ls)cmalsiB565
CmaCh02G003360Bottle gourd (USVL1VR-Ls)cmalsiB577
CmaCh02G003360Cucumber (Gy14) v2cgybcmaB229
CmaCh02G003360Cucumber (Gy14) v2cgybcmaB961
CmaCh02G003360Melon (DHL92) v3.6.1cmamedB617
CmaCh02G003360Melon (DHL92) v3.6.1cmamedB643
CmaCh02G003360Melon (DHL92) v3.6.1cmamedB670