CmaCh02G001860 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G001860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Oligopeptide transporter
Location	Cma_Chr02 : 857081 .. 858459 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCCTATCTCTACACGAGTCTTTCTATTACAAGAACATCGTGTTTCAGTCTGTCTAAGGTGCTTTTGTCTTTTCTTCTCTTTTTTTCTTGCCTTTTAGCTTCCAAGAGGAATTTGAAAGATATGAACTTACTTGAGATCTTCTTGAATGGTTGCAACTTCTTAAGGAATGGATATGTCGCACATTGGAGAAGTCCTATAATAGCCCAAACTCACCGTTAATAAATATTGTCTTCTTTAGGCTTTCTCTACTATTAGCAATGAGTTTGGGCTTTACAAATGGTATCAGATCCAAACATTGGTCAGTTTGCCATTACAATATCCCACATCAGTTGGAGAAGAGGACGAAATATTCCTTATAAGGGTGTGGAAACCTCTACCGAACAGACATGTTTTAGAACCTTGAGGAAGCCCAAAAGGGAAAGGTCAAAGAGGACAATATCTACTCGCTGGTTAATTTGGCATTTACAAGTCTCATCTCCTTTTGGGTTGTACATGAGAACATATAGGAGCTTCATTGCTTCCTTAAATGATGATAAATCAAGACCTTAAACCCATTTAAACTTGTTCATTTCCTCTCTTCTTGCTAATCACTGCTGTTAAGTTCACAAGTCAGTTAAACAATAAGAATCTGATATCAAAGTTTAAGAAAAGAATATGAACCAAAATATTTAAAAGAAGAGTAATATATAGCTTATCCACAGATTAAAGAAATGAATCTTCATGGGAAACAAAAAGGGAAAGTCCTTTTCGTGTTTTTCCATCACTTTTGAGCCTAAAATAACCATGAAACCATAAGTTTCCATTGATTTGCATCATCTTGGTGCAGCTAAATCCAAATTGAATTTGACATAAGAAAAAGAAGTGTGTGGATTGTATTGATGGGGAGCAAGGGAAACAGGTCATTTTCCAGCATTTGTTCAGTTTATGTGGCTACAGGCGCTACTACCACAAAAACATACTCCAAACTGCTGCACATGCTGTCAAAATAACCTGTATAAACCACAAGCTCTATCCTTTCTCTATCCTAATCCCAATCATACACTAACTTCTTGCTTTCCAATAAATCATGAAACTAAGCACAGCCTTAGCACACAAAAAAAATCCCTCCCTCCTTCCCTTTCTCTCTCTCTTTCTCTAGAAGAGAGAACTAAACGATAAAAAAACAATGGTAACTTCATGGAAAAACTCCCTAGTTCCTGTTGGCTATGGTATGCCTTTTTCAACAGTTAATTTTCTGCTTGTTTTAACAGGTTCTAGTCTCAAAACATGGGGGAGGAGGGGAAGAAGATGCTGCAGTGGATTTTAGGGGAAACCCAGTGGACAAGTCAAGAACCGGGGGATGGCTTGCCGCAGGACTCATCTTAGGTGCTTAA

mRNA sequence

ATGCATGCCTATCTCTACACGAGTCTTTCTATTACAAGAACATCGTGTTTCAGTCTGTCTAAGGTTCTAGTCTCAAAACATGGGGGAGGAGGGGAAGAAGATGCTGCAGTGGATTTTAGGGGAAACCCAGTGGACAAGTCAAGAACCGGGGGATGGCTTGCCGCAGGACTCATCTTAGGTGCTTAA

Coding sequence (CDS)

ATGCATGCCTATCTCTACACGAGTCTTTCTATTACAAGAACATCGTGTTTCAGTCTGTCTAAGGTTCTAGTCTCAAAACATGGGGGAGGAGGGGAAGAAGATGCTGCAGTGGATTTTAGGGGAAACCCAGTGGACAAGTCAAGAACCGGGGGATGGCTTGCCGCAGGACTCATCTTAGGTGCTTAA

Protein sequence

MHAYLYTSLSITRTSCFSLSKVLVSKHGGGGEEDAAVDFRGNPVDKSRTGGWLAAGLILGA

Homology

[Close]

BLAST of CmaCh02G001860 vs. Swiss-Prot
Match: PTR33_ARATH (Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thaliana GN=NPF6.4 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-06
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1


Query: 25 SKHGGGGEEDAAVDFRGNPVDKSRTGGWLAAGLILGA 62
          S HG     + A D+RGNP DKS+TGGWL AGLILG+
Sbjct: 6  SSHGAKDGSEEAYDYRGNPPDKSKTGGWLGAGLILGS 42

[Close]

BLAST of CmaCh02G001860 vs. TrEMBL
Match: A0A0A0LQY5_CUCSA (Oligopeptide transporter OS=Cucumis sativus GN=Csa_2G416080 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 22 VLVSKHGGGGEED-AAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLVSKHG GGEED AAVDF GNPVDKS+TGGWLAAGLILG
Sbjct: 2  VLVSKHGSGGEEDDAAVDFWGNPVDKSKTGGWLAAGLILG 41

[Close]

BLAST of CmaCh02G001860 vs. TrEMBL
Match: J7LEY9_CUCSA (Nitrate transporter OS=Cucumis sativus GN=NRT1.3 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 22 VLVSKHGGGGEED-AAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLVSKHG GGEED  AVDF GNPVDKS+TGGWLAAGLILG
Sbjct: 2  VLVSKHGSGGEEDDTAVDFWGNPVDKSKTGGWLAAGLILG 41

[Close]

BLAST of CmaCh02G001860 vs. TrEMBL
Match: A0A067K3W1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13740 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 22 VLVSKHG--GGGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLV+ HG   GG  DAAVDF GNPVDKSRTGGWLAAGLILG
Sbjct: 2  VLVASHGEKDGGNHDAAVDFHGNPVDKSRTGGWLAAGLILG 42

[Close]

BLAST of CmaCh02G001860 vs. TrEMBL
Match: C5XVS5_SORBI (Putative uncharacterized protein Sb04g024090 OS=Sorghum bicolor GN=Sb04g024090 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-08
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1


Query: 27 HGGGGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          HGGGG+   AVDFRGNPVDKSRTGGWL AGLILG
Sbjct: 7  HGGGGDGQEAVDFRGNPVDKSRTGGWLGAGLILG 40

[Close]

BLAST of CmaCh02G001860 vs. TrEMBL
Match: F6HIE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01240 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-08
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 3  AYLYTSLSITRTSCFSLSKVLVSKHGG-GGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          A L  SLS++ +   S   VLV  H G  G +D A+DFRGNPVDK+RTGGWL AGLILG
Sbjct: 38 ALLSLSLSLSLSPSPSAKMVLVDAHAGKDGTDDGALDFRGNPVDKTRTGGWLGAGLILG 96

[Close]

BLAST of CmaCh02G001860 vs. TAIR10
Match: AT3G21670.1 (AT3G21670.1 Major facilitator superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-07
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1


Query: 25 SKHGGGGEEDAAVDFRGNPVDKSRTGGWLAAGLILGA 62
          S HG     + A D+RGNP DKS+TGGWL AGLILG+
Sbjct: 6  SSHGAKDGSEEAYDYRGNPPDKSKTGGWLGAGLILGS 42

[Close]

BLAST of CmaCh02G001860 vs. NCBI nr
Match: gi|659111835|ref|XP_008455932.1| (PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-10
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1


Query: 22 VLVSKHG-GGGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLVSKHG GGGE+DAAVDF GNPVDKS+TGGWLAAGLILG
Sbjct: 2  VLVSKHGSGGGEDDAAVDFWGNPVDKSKTGGWLAAGLILG 41

[Close]

BLAST of CmaCh02G001860 vs. NCBI nr
Match: gi|778673402|ref|XP_011649985.1| (PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 4.0e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1


Query: 22 VLVSKHGGGGEED-AAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLVSKHG GGEED AAVDF GNPVDKS+TGGWLAAGLILG
Sbjct: 2  VLVSKHGSGGEEDDAAVDFWGNPVDKSKTGGWLAAGLILG 41

[Close]

BLAST of CmaCh02G001860 vs. NCBI nr
Match: gi|402810584|gb|AFR11353.1| (nitrate transporter [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 22 VLVSKHGGGGEED-AAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLVSKHG GGEED  AVDF GNPVDKS+TGGWLAAGLILG
Sbjct: 2  VLVSKHGSGGEEDDTAVDFWGNPVDKSKTGGWLAAGLILG 41

[Close]

BLAST of CmaCh02G001860 vs. NCBI nr
Match: gi|802658554|ref|XP_012080632.1| (PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-08
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1


Query: 22 VLVSKHG--GGGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          VLV+ HG   GG  DAAVDF GNPVDKSRTGGWLAAGLILG
Sbjct: 2  VLVASHGEKDGGNHDAAVDFHGNPVDKSRTGGWLAAGLILG 42

[Close]

BLAST of CmaCh02G001860 vs. NCBI nr
Match: gi|731409535|ref|XP_002274227.2| (PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 3  AYLYTSLSITRTSCFSLSKVLVSKHGG-GGEEDAAVDFRGNPVDKSRTGGWLAAGLILG 61
          A L  SLS++ +   S   VLV  H G  G +D A+DFRGNPVDK+RTGGWL AGLILG
Sbjct: 38 ALLSLSLSLSLSPSPSAKMVLVDAHAGKDGTDDGALDFRGNPVDKTRTGGWLGAGLILG 96

The following BLAST results are available for this feature:

BLAST of CmaCh02G001860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTR33_ARATH	2.1e-06	62.16	Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thaliana GN=NPF6.4 PE=1 SV=1	[more]

BLAST of CmaCh02G001860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQY5_CUCSA	2.8e-10	90.00	Oligopeptide transporter OS=Cucumis sativus GN=Csa_2G416080 PE=4 SV=1	[more]
J7LEY9_CUCSA	8.1e-10	87.50	Nitrate transporter OS=Cucumis sativus GN=NRT1.3 PE=2 SV=1	[more]
A0A067K3W1_JATCU	1.2e-08	80.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13740 PE=4 SV=1	[more]
C5XVS5_SORBI	2.6e-08	85.29	Putative uncharacterized protein Sb04g024090 OS=Sorghum bicolor GN=Sb04g024090 P...	[more]
F6HIE3_VITVI	2.6e-08	59.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g01240 PE=4 SV=...	[more]

BLAST of CmaCh02G001860 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21670.1	1.2e-07	62.16	Major facilitator superfamily protein	[more]

BLAST of CmaCh02G001860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111835\|ref\|XP_008455932.1\|	1.8e-10	90.00	PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Cucumis melo]	[more]
gi\|778673402\|ref\|XP_011649985.1\|	4.0e-10	90.00	PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Cucumis sativus]	[more]
gi\|402810584\|gb\|AFR11353.1\|	1.2e-09	87.50	nitrate transporter [Cucumis sativus]	[more]
gi\|802658554\|ref\|XP_012080632.1\|	1.7e-08	80.49	PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]	[more]
gi\|731409535\|ref\|XP_002274227.2\|	3.8e-08	59.32	PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000109	POT_fam

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G001860.1	CmaCh02G001860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000109	Proton-dependent oligopeptide transporter family	PANTHER	PTHR11654	OLIGOPEPTIDE TRANSPORTER-RELATED	coord: 32..60 score: 9.7
None	No IPR available	PANTHER	PTHR11654:SF154	PROTEIN NRT1/ PTR FAMILY 6.4	coord: 32..60 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G001860	Carg13512	Silver-seed gourd	carcmaB0042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G001860	Cucurbita maxima (Rimu)	cmacmaB161
CmaCh02G001860	Cucurbita maxima (Rimu)	cmacmaB451
CmaCh02G001860	Cucurbita maxima (Rimu)	cmacmaB477
CmaCh02G001860	Cucumber (Gy14) v1	cgycmaB0853
CmaCh02G001860	Cucurbita moschata (Rifu)	cmacmoB576
CmaCh02G001860	Cucurbita moschata (Rifu)	cmacmoB608
CmaCh02G001860	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G001860	Wild cucumber (PI 183967)	cmacpiB594
CmaCh02G001860	Cucumber (Chinese Long) v2	cmacuB589
CmaCh02G001860	Cucumber (Chinese Long) v2	cmacuB643
CmaCh02G001860	Melon (DHL92) v3.5.1	cmameB533
CmaCh02G001860	Watermelon (Charleston Gray)	cmawcgB532
CmaCh02G001860	Watermelon (Charleston Gray)	cmawcgB536
CmaCh02G001860	Cucurbita pepo (Zucchini)	cmacpeB617
CmaCh02G001860	Cucurbita pepo (Zucchini)	cmacpeB628
CmaCh02G001860	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G001860	Bottle gourd (USVL1VR-Ls)	cmalsiB549
CmaCh02G001860	Cucumber (Gy14) v2	cgybcmaB230
CmaCh02G001860	Melon (DHL92) v3.6.1	cmamedB612
CmaCh02G001860	Silver-seed gourd	carcmaB0478
CmaCh02G001860	Cucumber (Chinese Long) v3	cmacucB0702
CmaCh02G001860	Watermelon (97103) v2	cmawmbB618
CmaCh02G001860	Watermelon (97103) v2	cmawmbB623
CmaCh02G001860	Watermelon (97103) v2	cmawmbB631
CmaCh02G001860	Wax gourd	cmawgoB0758