CmaCh02G000460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G000460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase III subunit RPC6
LocationCma_Chr02 : 231986 .. 234452 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCGGTCAGTCGTTAGACTTCACTCCATCGCCCTTGTACGTTTGAGAGAAACCGAACGCCCCCTCGGCATCGATTTGCCGATCAAAACTGATCTCGCCGCCGCTCGTCCTCCCACCTCTCCCCGCATCGTCTTCTCTCCGTCGCCTCTCCGGGTGGTTTTCTGTAGATTGCTTAAACCCTAGCACTTTAGGGCGCTTCTCCATCGCTTTTGCGTTGCCACTGTTTCTGCAATTATCGTCTCTAAAACCTCGTAGTTCTGATATTTGATTTGAAGTCGCAGACCTTCAGGTATTCTTCCTGATTTCCCTATGAAATTACTTCAATATCGATTCTTAGATTATTTTATTTACTCCTCATTATGAATATATAAATGATTTACGCGCATATATATCATCTTGTTTTTGGTTTTTCTGATAGTTCCTAGCAACCATTTTCTTAACGTCTCTGCGATTGGCTTGTTCTGCTAAATTTACATATGATCGCTTCTCAATTTCTCACTTTTAGGTGCACGCGAAAGAAGAAAAATTGTGATTGTTCATTACCTATACTGCAGACCAAACTCAACGTGTTTTTTTCATGATTTTTTTGGGATAATTGTTCATAGTGACACATATCATCAAGAACTCTCAACAAAAATCTTTATGGATTTGAAATTGTTTTCCTCAAGTTCTATAGTTTTTGAAACAGCATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCCTATGAATTGTTGAATAAAGTGCTCCTTTGTTATTTATTCAGTCATCCCGTTTCCAAGGCACAGTTGTTCTCTCAGCTCAGCTCAGCATCATTTTCAATTTCCTTAATCACATCTCTTACAAATCTTCACGTTTCCACATCATTTTGTTTTTATCAATCTCATTATGCACATATCATTTAATGTTAATAGGAATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAGAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTGAAGGCCCTTCAAGCCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACGCGTTCAAGAAGAGTGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACCGGGGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAGGTTTGAAGCTTTCTGAGGTTGGTTTTAAGAGAACGAATGGCCGAGAATTTCCCCTCTAACAATACGAACTATGCTCGACTTGGCAATTCTAGAAAAGTTTTAGCTGTCTATTCTTTATTGTGTTCATAATCTGATGTGGCTGCTGTTTCAATATTATGGACTCCAATCCCGCCTCATAGCTGAGGTCGGGTTAAAACGTGGGCGGTATTATATGTTATGTGTCATGGCCATCTTTATCCAAAGGTGCAAGTGGGTACCATTTTACATGAACCGTTCACAAAACAGCTTCAAATGGGTACTATTTTACTTCAAAATTATATGAATGGTTCACGTAACCAAGAGTCACCTTTGGGTTACCCATTTATGACTCATAAATCATTCTCAAA

mRNA sequence

GCATCGGTCAGTCGTTAGACTTCACTCCATCGCCCTTGTACGTTTGAGAGAAACCGAACGCCCCCTCGGCATCGATTTGCCGATCAAAACTGATCTCGCCGCCGCTCGTCCTCCCACCTCTCCCCGCATCGTCTTCTCTCCGTCGCCTCTCCGGGTGGTTTTCTGTAGATTGCTTAAACCCTAGCACTTTAGGGCGCTTCTCCATCGCTTTTGCGTTGCCACTGTTTCTGCAATTATCGTCTCTAAAACCTCGTAGTTCTGATATTTGATTTGAAGTCGCAGACCTTCAGATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAGAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTGAAGGCCCTTCAAGCCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACGCGTTCAAGAAGAGTGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACCGGGGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAGGTTTGAAGCTTTCTGAGGTTGGTTTTAAGAGAACGAATGGCCGAGAATTTCCCCTCTAACAATACGAACTATGCTCGACTTGGCAATTCTAGAAAAGTTTTAGCTGTCTATTCTTTATTGTGTTCATAATCTGATGTGGCTGCTGTTTCAATATTATGGACTCCAATCCCGCCTCATAGCTGAGGTCGGGTTAAAACGTGGGCGGTATTATATGTTATGTGTCATGGCCATCTTTATCCAAAGGTGCAAGTGGGTACCATTTTACATGAACCGTTCACAAAACAGCTTCAAATGGGTACTATTTTACTTCAAAATTATATGAATGGTTCACGTAACCAAGAGTCACCTTTGGGTTACCCATTTATGACTCATAAATCATTCTCAAA

Coding sequence (CDS)

ATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAGAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTGAAGGCCCTTCAAGCCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACGCGTTCAAGAAGAGTGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACCGGGGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAG

Protein sequence

MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Homology
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BLAST of CmaCh02G000460 vs. Swiss-Prot
Match: RPC6_DICDI (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr3f PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.9e-27
Identity = 73/240 (30.42%), Postives = 119/240 (49.58%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           +  S   +S K   PE      G  +E + ++Y LI +  + G W  ++K  + Y    +
Sbjct: 52  IQNSDETTSYKEVNPEDQAKFRGLGVE-DFLIYQLIEASSNTGAWTRELKNSSGYQQVQI 111

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
           TK LK L++R LIK V+  Q+  KK Y+  + EPS+E+TGG  YSD   D +YI  +K  
Sbjct: 112 TKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH 171

Query: 121 CARMIQKMKVATIEGIVDAFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180
               +       +  I+   +K    A+   L  E I+ +VN ++ D ++ E++ T  G 
Sbjct: 172 IKTFVDNKGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGA 231

Query: 181 FDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLE 239
                +G+     Y K  K         + PCG CP  + C+ NG++SP+ CVY+ ++LE
Sbjct: 232 M----LGRRSGILY-KPTKTPIPVNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFKQYLE 285

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BLAST of CmaCh02G000460 vs. Swiss-Prot
Match: RPC6_BOVIN (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.4e-26
Identity = 72/229 (31.44%), Postives = 113/229 (49.34%), Query Frame = 1 

Query: 29  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQARGLIKLVEHYQNKGKKFYL 88
           EK++Y +I    + GIW  D++ ++  P   + K LK L+++ LIK V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVD-------AFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       +F 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
           + +  +   P TG +   PCG+CP  + C   G ISP  C+Y T+WLEF
Sbjct: 272 AVSPII---PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of CmaCh02G000460 vs. Swiss-Prot
Match: RPC6_HUMAN (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 72/229 (31.44%), Postives = 112/229 (48.91%), Query Frame = 1 

Query: 29  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQARGLIKLVEHYQNKGKKFYL 88
           EK++Y +I    + GIW  D++ ++  P   + K LK L+++ LIK V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVD-------AFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       +F 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
           +    +   P TG +   PCG+CP  + C   G ISP  C+Y T+WLEF
Sbjct: 272 AVNPII---PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of CmaCh02G000460 vs. Swiss-Prot
Match: RPC6_MOUSE (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.7e-25
Identity = 72/229 (31.44%), Postives = 112/229 (48.91%), Query Frame = 1 

Query: 29  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQARGLIKLVEHYQNKGKKFYL 88
           EK++Y +I    + GIW  D++ ++  P   + K LK L+++ LIK V+      KK Y+
Sbjct: 92  EKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 151

Query: 89  SKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVD-------AFK 148
             + +P + +TGG WYSD   + E++  L   C + +Q       E   +       +F 
Sbjct: 152 LYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFA 211

Query: 149 KS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYK 208
            S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y+
Sbjct: 212 SSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYR 271

Query: 209 SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
           +    +   P TG + + PCG+CP    C   G ISP  C+Y T+WLEF
Sbjct: 272 AVNPIL---PPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

[Close]
BLAST of CmaCh02G000460 vs. Swiss-Prot
Match: RPC6_DROME (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster GN=CG5380 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.8e-21
Identity = 63/227 (27.75%), Postives = 101/227 (44.49%), Query Frame = 1 

Query: 29  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQARGLIKLVEHYQNKGKKFYL 88
           EKV+Y ++    + GIWI D++ ++      + K LK L+ + LIK V+      KK Y+
Sbjct: 80  EKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYM 139

Query: 89  SKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQ-----------------KMKVA 148
             + EP   +TGG WY D   + E++  L   C R +Q                 +M   
Sbjct: 140 LYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCC 199

Query: 149 TIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKS 208
           T+  +       G SKV+L+   +E I+  +V D     V+            G   Y++
Sbjct: 200 TVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD---------GSFVYRA 259

Query: 209 YAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLE 239
               +   P TG +   PCG+CP I +C+  G ++  TC Y   WL+
Sbjct: 260 VNAPL---PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]
BLAST of CmaCh02G000460 vs. TrEMBL
Match: A0A0A0L5W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 2.1e-101
Identity = 183/243 (75.31%), Postives = 213/243 (87.65%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDN 60
           M +S+GPSSLKRKRP+    +  GGALI  EKVLYDLICSKQSMGI   DMKRETK+ ++
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLK 120
           VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YI+TLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 GFCARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180
             CARMIQ+ K+ TIEGIV++FK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FDFIPVGKICYK--SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKW 240
           F+FIP+GKICYK  +   G+KGEPKTGAMAS PCGVCPRI +CTPNGIISP TCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

[Close]
BLAST of CmaCh02G000460 vs. TrEMBL
Match: E6NUB2_JATCU (JHL06P13.1 protein OS=Jatropha curcas GN=JHL06P13.1 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-79
Identity = 148/239 (61.92%), Postives = 179/239 (74.90%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           MSR QG    KRK+PE ++    +L EHE+ LY+ I SKQ MGIW  DMKRET  PD VV
Sbjct: 1   MSRFQGQ---KRKQPE-SNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVV 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
            KSLK LQA+ LIK V + QNKG+K+Y++ +FEPSKE+TGG WY +G LD  +I  LK  
Sbjct: 61  NKSLKVLQAKNLIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQ 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           C + I+K+KVAT+E + D   ++G S V L+++QIEEI+ ALVLDN+V EVKS G GEF 
Sbjct: 121 CKKQIEKLKVATVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFA 180

Query: 181 FIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
            IPVGK+CYKS  KG  G+PK GAMAS PCGVCPRI HCTPNGIISP+TCVYY KWLEF
Sbjct: 181 SIPVGKVCYKSIGKGSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235

[Close]
BLAST of CmaCh02G000460 vs. TrEMBL
Match: A0A061G7G4_THECC (DNA-directed RNA polymerase III subunit rpc6, putative isoform 1 OS=Theobroma cacao GN=TCM_027154 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 6.5e-79
Identity = 147/240 (61.25%), Postives = 184/240 (76.67%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           MSR QGP++LKRKRP        +L EHE++++D+I  KQ MGI   DMKRE   PDN+V
Sbjct: 1   MSRLQGPNALKRKRPGAT---SDSLTEHERIVHDVIQGKQDMGISQRDMKREINLPDNLV 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
           TK LK+L A+ LIK V++ QN+G+K ++S +FEPS E+TGG WY +G LD EYI+ LK  
Sbjct: 61  TKCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYVEGSLDTEYINVLKEQ 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           C R I  +KVAT+EG+ DA K+S  S+++LS++QIEEIV ALVLDNEVMEVKS+G GEF 
Sbjct: 121 CWRKIYGLKVATLEGVTDAIKRSNVSQIELSKQQIEEIVKALVLDNEVMEVKSSGTGEFA 180

Query: 181 FIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
            IPVGK+CYK   K G  GEPK G MAS PCGVCP+I+HCTP+GIISP+TCVYY KWL+F
Sbjct: 181 SIPVGKVCYKCIGKRGYGGEPKVGTMASIPCGVCPQISHCTPDGIISPKTCVYYKKWLDF 237

[Close]
BLAST of CmaCh02G000460 vs. TrEMBL
Match: W9RC58_9ROSA (DNA-directed RNA polymerase III subunit RPC6 OS=Morus notabilis GN=L484_025787 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.2e-78
Identity = 143/239 (59.83%), Postives = 187/239 (78.24%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           MSR Q PSSLKRK+P+ +     +L EHE+++Y++I SKQ MGIW+ DMKR  K PDNV 
Sbjct: 1   MSRLQEPSSLKRKQPD-SRSPLDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVA 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
            K+LK+L+ + LIK V + Q +GKK Y++ +FEP+ E+TGG WYS+GK+D   I+ LK  
Sbjct: 61  NKALKSLETKKLIKEVVNIQKRGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQ 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           C + I K +VAT+EGI+DA +KSG S V+L+  QIEE+V ALVLDNEV+EVKS G GEFD
Sbjct: 121 CLKWIYKQRVATLEGILDAIRKSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFD 180

Query: 181 FIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
            IPVGK+CYKS +KG +G+PK GAM+S PCGVCPRI+ CTP+GIISP+TC YY++WL+F
Sbjct: 181 SIPVGKVCYKSTSKGSRGDPKIGAMSSIPCGVCPRISDCTPDGIISPKTCKYYSQWLDF 238

[Close]
BLAST of CmaCh02G000460 vs. TrEMBL
Match: B9RBH3_RICCO (DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_1676960 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 7.2e-78
Identity = 146/240 (60.83%), Postives = 182/240 (75.83%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           M+RSQ   +LKRK+PE +     +L EHE  LY++I SKQ MGIW  DMKRET  PDNVV
Sbjct: 1   MNRSQ---ALKRKQPESS-SPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVV 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
            KSLK LQA+ LIK V + QNKG+K Y++ +FEPSKE+TGG WY +G LD E+I  LK  
Sbjct: 61  NKSLKVLQAKNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEV 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           C + + K+KVAT+EGI D+ K+SG    +L+++QIEEIV ALVLDN ++EVKS G  EF 
Sbjct: 121 CTKQVLKLKVATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFS 180

Query: 181 FIPVGKICYKSYAKG-VKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
           FIP+GK+CYK   KG   GEP+ GAMAS PCGVCPRI+ CTP+GIISP+TCVYY+KWL+F
Sbjct: 181 FIPIGKVCYKCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQTCVYYSKWLDF 236

[Close]
BLAST of CmaCh02G000460 vs. TAIR10
Match: AT5G23710.1 (AT5G23710.1 DNA binding;DNA-directed RNA polymerases)

HSP 1 Score: 201.8 bits (512), Expect = 4.6e-52
Identity = 105/232 (45.26%), Postives = 142/232 (61.21%), Query Frame = 1 

Query: 11  KRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAR 70
           KRKRP+P    G     HEK L DLI   Q  G  + ++KRE   P  +VT+ + +L+ +
Sbjct: 3   KRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRKK 62

Query: 71  GLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQ--KM 130
            LIK V +  NKG K YL+ +FEP  ELTGG WY+DG LD   I  LK  C  +++  + 
Sbjct: 63  NLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQ 122

Query: 131 KVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKIC 190
           +V T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    +G++C
Sbjct: 123 RVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVC 182

Query: 191 YKSYAKGV-KGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
           Y+   K    GEP+ GA AS PCGVCP I  C+P+G+ISP TCVY+ KWL+F
Sbjct: 183 YRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

[Close]
BLAST of CmaCh02G000460 vs. NCBI nr
Match: gi|659096228|ref|XP_008448982.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 1.8e-101
Identity = 184/243 (75.72%), Postives = 213/243 (87.65%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDN 60
           MS+SQGPSSLKRKRP+    +  GGALI  EKVLYDLICSKQSMGI   DMKRETK+ ++
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLK 120
           VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YI+TLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 GFCARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180
             CARMIQ+ K+ TIEGIV++FK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FDFIPVGKICYK--SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKW 240
           F+FIP+GKICYK  +   G+KGEPK GAMAS PCGVCPRI +CTPNGIISP TCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

[Close]
BLAST of CmaCh02G000460 vs. NCBI nr
Match: gi|449461094|ref|XP_004148278.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus])

HSP 1 Score: 376.7 bits (966), Expect = 3.0e-101
Identity = 183/243 (75.31%), Postives = 213/243 (87.65%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDN 60
           M +S+GPSSLKRKRP+    +  GGALI  EKVLYDLICSKQSMGI   DMKRETK+ ++
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLK 120
           VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YI+TLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 GFCARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180
             CARMIQ+ K+ TIEGIV++FK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FDFIPVGKICYK--SYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKW 240
           F+FIP+GKICYK  +   G+KGEPKTGAMAS PCGVCPRI +CTPNGIISP TCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

[Close]
BLAST of CmaCh02G000460 vs. NCBI nr
Match: gi|659078854|ref|XP_008439941.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 6.7e-101
Identity = 183/242 (75.62%), Postives = 214/242 (88.43%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHG--GALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDN 60
           MS+SQGPSSLKRKRP+ +  +   GALI  EKVLYDLICSKQSMGI   DMKRETK+ ++
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLK 120
           VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KELTGGNWY DG+LD++YI+TLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 GFCARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGE 180
             CARMIQ+ K+ TIEGIV++FK+SGA KV+L+REQIEEIVNALVLDN+V EVKS+G GE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FDFIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWL 240
           F+FIP+GKICYK  ++ G+KGEPKTGAMAS PCGVCPRI HCTPNGIISP TCVYYTKWL
Sbjct: 181 FEFIPIGKICYKYCSQGGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKWL 240

[Close]
BLAST of CmaCh02G000460 vs. NCBI nr
Match: gi|1009182704|ref|XP_015872858.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba])

HSP 1 Score: 322.4 bits (825), Expect = 6.7e-85
Identity = 154/239 (64.44%), Postives = 189/239 (79.08%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           MSR QGP +LKRKRP+ ++    +L E E++LYD+I SKQ MGIW  DMKRET  PDNVV
Sbjct: 1   MSRLQGPLALKRKRPD-SNSPSESLTEQERILYDVIRSKQDMGIWTRDMKRETNLPDNVV 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
            KSLK+LQA+ LIK V + QNKG+K Y++ +FEPSKE++GG WY +G LD E+I  LK  
Sbjct: 61  NKSLKSLQAKKLIKEVVNIQNKGRKHYMAAEFEPSKEISGGAWYVEGSLDTEFIDLLKDQ 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           CA++I K +VAT+EGI+D  +++G  KV+ S +QIEEI+ ALVLDN VM+VKS G GEFD
Sbjct: 121 CAKIIYKQRVATVEGILDVIRRTGIFKVEFSTQQIEEILRALVLDNVVMDVKSNGMGEFD 180

Query: 181 FIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
            IPVGK+CYK   KGV+GEPK GAMAS PCGVCPRINHCTP+GIISP TCVYY KWL+F
Sbjct: 181 SIPVGKVCYKCTNKGVRGEPKAGAMASIPCGVCPRINHCTPDGIISPTTCVYYNKWLDF 238

[Close]
BLAST of CmaCh02G000460 vs. NCBI nr
Match: gi|802603667|ref|XP_012073203.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Jatropha curcas])

HSP 1 Score: 304.3 bits (778), Expect = 1.9e-79
Identity = 148/239 (61.92%), Postives = 179/239 (74.90%), Query Frame = 1 

Query: 1   MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVV 60
           MSR QG    KRK+PE ++    +L EHE+ LY+ I SKQ MGIW  DMKRET  PD VV
Sbjct: 1   MSRFQGQ---KRKQPE-SNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVV 60

Query: 61  TKSLKALQARGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGF 120
            KSLK LQA+ LIK V + QNKG+K+Y++ +FEPSKE+TGG WY +G LD  +I  LK  
Sbjct: 61  NKSLKVLQAKNLIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQ 120

Query: 121 CARMIQKMKVATIEGIVDAFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFD 180
           C + I+K+KVAT+E + D   ++G S V L+++QIEEI+ ALVLDN+V EVKS G GEF 
Sbjct: 121 CKKQIEKLKVATVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFA 180

Query: 181 FIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF 240
            IPVGK+CYKS  KG  G+PK GAMAS PCGVCPRI HCTPNGIISP+TCVYY KWLEF
Sbjct: 181 SIPVGKVCYKSIGKGSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235

The following BLAST results are available for this feature:
BLAST of CmaCh02G000460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC6_DICDI4.9e-2730.42DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr... [more]
RPC6_BOVIN5.4e-2631.44DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1[more]
RPC6_HUMAN1.2e-2531.44DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1[more]
RPC6_MOUSE2.7e-2531.44DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1[more]
RPC6_DROME6.8e-2127.75Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster... [more]
BLAST of CmaCh02G000460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5W6_CUCSA2.1e-10175.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1[more]
E6NUB2_JATCU1.3e-7961.92JHL06P13.1 protein OS=Jatropha curcas GN=JHL06P13.1 PE=4 SV=1[more]
A0A061G7G4_THECC6.5e-7961.25DNA-directed RNA polymerase III subunit rpc6, putative isoform 1 OS=Theobroma ca... [more]
W9RC58_9ROSA3.2e-7859.83DNA-directed RNA polymerase III subunit RPC6 OS=Morus notabilis GN=L484_025787 P... [more]
B9RBH3_RICCO7.2e-7860.83DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_... [more]
BLAST of CmaCh02G000460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23710.14.6e-5245.26 DNA binding;DNA-directed RNA polymerases[more]
BLAST of CmaCh02G000460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096228|ref|XP_008448982.1|1.8e-10175.72PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo][more]
gi|449461094|ref|XP_004148278.1|3.0e-10175.31PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus][more]
gi|659078854|ref|XP_008439941.1|6.7e-10175.62PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo][more]
gi|1009182704|ref|XP_015872858.1|6.7e-8564.44PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba][more]
gi|802603667|ref|XP_012073203.1|1.9e-7961.92PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007832RNA_pol_Rpc34
IPR011991Winged helix-turn-helix DNA-binding domain
IPR016049RNA_pol_Rpc34-like
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: Biological Process
TermDefinition
GO:0006359regulation of transcription from RNA polymerase III promoter
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006359 regulation of transcription from RNA polymerase III promoter
biological_process GO:0006383 transcription from RNA polymerase III promoter
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G000460.1CmaCh02G000460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 26..127
score: 6.9E-25coord: 128..238
score: 9.2
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 27..89
score: 8.94
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 1..239
score: 2.0
NoneNo IPR availablePANTHERPTHR12780:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6coord: 1..239
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh02G000460Cla013496Watermelon (97103) v1cmawmB593
CmaCh02G000460ClCG02G018290Watermelon (Charleston Gray)cmawcgB542
CmaCh02G000460Lsi10G015490Bottle gourd (USVL1VR-Ls)cmalsiB541
CmaCh02G000460Cp4.1LG05g15400Cucurbita pepo (Zucchini)cmacpeB646
CmaCh02G000460Cla97C02G044120Watermelon (97103) v2cmawmbB630
CmaCh02G000460Bhi10G000777Wax gourdcmawgoB0746
CmaCh02G000460Carg13635Silver-seed gourdcarcmaB0042
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G000460Cucurbita maxima (Rimu)cmacmaB161
CmaCh02G000460Cucurbita maxima (Rimu)cmacmaB454
CmaCh02G000460Cucurbita maxima (Rimu)cmacmaB476
CmaCh02G000460Cucumber (Gy14) v1cgycmaB0390
CmaCh02G000460Cucumber (Gy14) v1cgycmaB0533
CmaCh02G000460Cucurbita moschata (Rifu)cmacmoB576
CmaCh02G000460Cucurbita moschata (Rifu)cmacmoB601
CmaCh02G000460Cucurbita moschata (Rifu)cmacmoB613
CmaCh02G000460Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G000460Wild cucumber (PI 183967)cmacpiB637
CmaCh02G000460Wild cucumber (PI 183967)cmacpiB643
CmaCh02G000460Cucumber (Chinese Long) v2cmacuB632
CmaCh02G000460Cucumber (Chinese Long) v2cmacuB638
CmaCh02G000460Melon (DHL92) v3.5.1cmameB536
CmaCh02G000460Melon (DHL92) v3.5.1cmameB574
CmaCh02G000460Cucurbita pepo (Zucchini)cmacpeB620
CmaCh02G000460Cucurbita pepo (Zucchini)cmacpeB642
CmaCh02G000460Bottle gourd (USVL1VR-Ls)cmalsiB559
CmaCh02G000460Cucumber (Gy14) v2cgybcmaB821
CmaCh02G000460Cucumber (Gy14) v2cgybcmaB826
CmaCh02G000460Melon (DHL92) v3.6.1cmamedB627
CmaCh02G000460Melon (DHL92) v3.6.1cmamedB656
CmaCh02G000460Silver-seed gourdcarcmaB0475
CmaCh02G000460Silver-seed gourdcarcmaB0549
CmaCh02G000460Silver-seed gourdcarcmaB0747
CmaCh02G000460Cucumber (Chinese Long) v3cmacucB0754
CmaCh02G000460Cucumber (Chinese Long) v3cmacucB0763
CmaCh02G000460Cucumber (Chinese Long) v3cmacucB0768
CmaCh02G000460Wax gourdcmawgoB0732