CmaCh01G015520 (gene) Cucurbita maxima (Rimu)

NameCmaCh01G015520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCryptochrome DASH, chloroplastic/mitochondrial
LocationCma_Chr01 : 10809413 .. 10810638 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAACTTCTGGAAAAAGGTGAAAATTGGTGCTCCCTGTTCTTCTTGTTTTATATTAACCAGACATTGTACAAGGAATGGATACACCCAATGATGAGTTCAACCATTTGCATCTCTTTACTTTTCTCCCCTTGCTATTTAGGATTCACGACTGATGAGGAAACAAGCAATCAATGGGATGTTAGGACCTGGCTACGCTACAAAATGTTGAGGATTATCGAGAGGAGTAGTCCTACATTGACCACATTGGCTAGTCCCAAGCAAGTAAGTGCAGATTTTCTTCTGAATGAATTTTGTACATTATAAAAGTTTTCCAAGCGAATGGCTGTTCTTAAAGGTGCTAGACAATGCAAATCTATCTTCTAAGAACACCTTCTTATTCTTTGGATGGTGTGCCACAATCAGTTTGTGTTGACTCAAAAGTTAGGAGGTTGGTAGAGGAAATAAGATCAAAGCAGGAGTTCAACATTTCTGTAGTGCAATCTAATTACAAGGTAGAAACACGAAAAACTTGCACAGTACATCCTTCTTTTTTACCGGTCCTTGCAGGATAAATGGTATTCAACTTGTTAAATCCCACATCGGTTGGAGAGAGAAACGAAATATTTCTATAAGGGTATGGACACCCCTCCCTAGTATACATGTTTTAAAATTGTGAGGTTGACGACGATATATAATGGGCAAAAGTGGATAATATCAACTAATGGTGGACTTGGGCTATTACAAATGGTATCAGAGCCAACCATTGGGCGGTGTGCCAGTGAGGACGCTGGCCCCCAAGAGAGTGGATTATTAGATCTCACATCGGTTGGAGAGGAAAACGAAGCATTCCTTATAAGGGCATGGACACCTCTCTCTAGTATACACGTTTTAAAATTGTGAGGTTGATGACGATATGTAATGGACCAAAGCAGACAATATCAACTAGAAGTGGGTTTGGACTGTTACAAAGCCATTCATAGGTCATATCAATTTTGTTCATTGTGTCTTTATCGGATTGGTTATGATATGGTAGACTAAGACACTAGAGTGACTAAAATTATGTCAAGTAGGCAATACGTCGTTGTTGGGCTCAAATTTTCTTTGGATTACAAGTCCCCCATTTCCTATGGAAGTATCTTTTCTAGTATATGCTAATCTGTGTACAACGATTATATACTTGTCAGGCGCAAACGTACGATCCCGAGGGTGAATATGTGGCGTATTGGTTGCCAAAGCTATGA

mRNA sequence

ATGAGTAAACTTCTGGAAAAAGGATTCACGACTGATGAGGAAACAAGCAATCAATGGGATGTTAGGACCTGGCTACGCTACAAAATGTTGAGGATTATCGAGAGGAGTAGTCCTACATTGACCACATTGGCTAGTCCCAAGCAAGCGCAAACGTACGATCCCGAGGGTGAATATGTGGCGTATTGGTTGCCAAAGCTATGA

Coding sequence (CDS)

ATGAGTAAACTTCTGGAAAAAGGATTCACGACTGATGAGGAAACAAGCAATCAATGGGATGTTAGGACCTGGCTACGCTACAAAATGTTGAGGATTATCGAGAGGAGTAGTCCTACATTGACCACATTGGCTAGTCCCAAGCAAGCGCAAACGTACGATCCCGAGGGTGAATATGTGGCGTATTGGTTGCCAAAGCTATGA

Protein sequence

MSKLLEKGFTTDEETSNQWDVRTWLRYKMLRIIERSSPTLTTLASPKQAQTYDPEGEYVAYWLPKL
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G015520.1CmaCh01G015520.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.579.10coord: 38..66
score: 4.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G015520Cucurbita moschata (Rifu)cmacmoB431
CmaCh01G015520Cucurbita moschata (Rifu)cmacmoB443
CmaCh01G015520Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G015520Cucurbita moschata (Rifu)cmacmoB486
CmaCh01G015520Wild cucumber (PI 183967)cmacpiB445
CmaCh01G015520Wild cucumber (PI 183967)cmacpiB448
CmaCh01G015520Wild cucumber (PI 183967)cmacpiB463
CmaCh01G015520Cucumber (Chinese Long) v2cmacuB442
CmaCh01G015520Cucumber (Chinese Long) v2cmacuB445
CmaCh01G015520Cucumber (Chinese Long) v2cmacuB460
CmaCh01G015520Melon (DHL92) v3.5.1cmameB409
CmaCh01G015520Melon (DHL92) v3.5.1cmameB421
CmaCh01G015520Melon (DHL92) v3.5.1cmameB425
CmaCh01G015520Watermelon (Charleston Gray)cmawcgB409
CmaCh01G015520Watermelon (Charleston Gray)cmawcgB417
CmaCh01G015520Watermelon (Charleston Gray)cmawcgB436
CmaCh01G015520Watermelon (97103) v1cmawmB446
CmaCh01G015520Watermelon (97103) v1cmawmB424
CmaCh01G015520Watermelon (97103) v1cmawmB436
CmaCh01G015520Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G015520Cucurbita pepo (Zucchini)cmacpeB464
CmaCh01G015520Cucurbita pepo (Zucchini)cmacpeB514
CmaCh01G015520Cucurbita pepo (Zucchini)cmacpeB502
CmaCh01G015520Bottle gourd (USVL1VR-Ls)cmalsiB425
CmaCh01G015520Bottle gourd (USVL1VR-Ls)cmalsiB438
CmaCh01G015520Bottle gourd (USVL1VR-Ls)cmalsiB457
CmaCh01G015520Cucumber (Gy14) v2cgybcmaB206
CmaCh01G015520Cucumber (Gy14) v2cgybcmaB359
CmaCh01G015520Cucumber (Gy14) v2cgybcmaB372
CmaCh01G015520Melon (DHL92) v3.6.1cmamedB471
CmaCh01G015520Melon (DHL92) v3.6.1cmamedB484
CmaCh01G015520Melon (DHL92) v3.6.1cmamedB488
CmaCh01G015520Silver-seed gourdcarcmaB0081
CmaCh01G015520Silver-seed gourdcarcmaB0771
CmaCh01G015520Silver-seed gourdcarcmaB0894
CmaCh01G015520Silver-seed gourdcarcmaB0899
CmaCh01G015520Cucumber (Chinese Long) v3cmacucB0533
CmaCh01G015520Cucumber (Chinese Long) v3cmacucB0537
CmaCh01G015520Cucumber (Chinese Long) v3cmacucB0551
CmaCh01G015520Watermelon (97103) v2cmawmbB475
CmaCh01G015520Watermelon (97103) v2cmawmbB486
CmaCh01G015520Watermelon (97103) v2cmawmbB505
CmaCh01G015520Wax gourdcmawgoB0569
CmaCh01G015520Wax gourdcmawgoB0601
CmaCh01G015520Wax gourdcmawgoB0624
CmaCh01G015520Cucurbita maxima (Rimu)cmacmaB044
CmaCh01G015520Cucurbita maxima (Rimu)cmacmaB059
CmaCh01G015520Cucurbita maxima (Rimu)cmacmaB429
CmaCh01G015520Cucumber (Gy14) v1cgycmaB0456
CmaCh01G015520Cucumber (Gy14) v1cgycmaB0863
CmaCh01G015520Cucumber (Gy14) v1cgycmaB0866