CmaCh01G013190 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G013190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr01 : 9410941 .. 9411449 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATGTCACCTTCGACCCCCTTTTCAATATTTAGAGGACTGGATTGAATACTGTTTGATCTTTTGGTCGGTGGTATGCGTTTTAAGTAGTTAAACTATGTTTAGGTTTGCAATTTTAATTTCTTGTTTTCAGTTCGTGTATATTTAGGTAG

mRNA sequence

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Coding sequence (CDS)

ATGCAGGAGGTTTGGACCTTATGTAGAATCTTCAGAAGAATCCCATCAATTAGAAAGTACAGTCCAATAATATCTCCCATACCCCAAAACCCTAATAATAACTCCTTTCCAACTCTAATAGACCTTGAAACTAAGCCAAACCCTTCTCAACAGCTCAACCTCTTCTTCCCCCCAAAAAATAGCTTCTTTAACCCTAGCTTAACCCTACCCTATGATTCCTTTGAACCCTCTTCTTTGTACCCGTCGAGCTTTTGGAACGGCGTTGATGGTGGAGGAGGCGGTGGAGGTCGGGATGGAGGAGGAGGAGGAGGCGATGTCTTCACTAGTGGAGGTTGGAACGAGTTGCAACTTGTTGTTCAGATTTCGTGTATATTTAGGTAG

Protein sequence

MQEVWTLCRIFRRIPSIRKYSPIISPIPQNPNNNSFPTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLPYDSFEPSSLYPSSFWNGVDGGGGGGGRDGGGGGGDVFTSGGWNELQLVVQISCIFR

Homology

[Close]

BLAST of CmaCh01G013190 vs. TrEMBL
Match: A0A0A0L479_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608170 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 1


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
           EVWTLCRI +RIPS +KY P +          P PQNPNN++                  
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
               LI LETKP P +QL           NP+LTLP    SFE S +  SSFWNGV+G  
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294

[Close]

BLAST of CmaCh01G013190 vs. NCBI nr
Match: gi|700199783|gb|KGN54941.1| (hypothetical protein Csa_4G608170 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 1


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
           EVWTLCRI +RIPS +KY P +          P PQNPNN++                  
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
               LI LETKP P +QL           NP+LTLP    SFE S +  SSFWNGV+G  
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294

[Close]

BLAST of CmaCh01G013190 vs. NCBI nr
Match: gi|449453868|ref|XP_004144678.1| (PREDICTED: transcription factor JUNGBRUNNEN 1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-14
Identity = 62/150 (41.33%), Postives = 77/150 (51.33%), Query Frame = 1


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNNSF----------------- 62
           EVWTLCRI +RIPS +KY P +          P PQNPNN++                  
Sbjct: 175 EVWTLCRILKRIPSFKKYIPTLHNNNNDNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  --PTLIDLETKPNPSQQLNLFFPPKNSFFNPSLTLP--YDSFEPSSLYPSSFWNGVDGGG 122
               LI LETKP P +QL           NP+LTLP    SFE S +  SSFWNGV+G  
Sbjct: 235 GHHHLIHLETKPKPFEQLT----------NPNLTLPSCASSFESSPICLSSFWNGVEG-- 294

[Close]

BLAST of CmaCh01G013190 vs. NCBI nr
Match: gi|659133568|ref|XP_008466794.1| (PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 1


Query: 3   EVWTLCRIFRRIPSIRKYSPIIS---------PIPQNPNNN-------------SFPTLI 62
           EVWTLCRIF+RIPS +KY P  +         P PQNPNN+             S P   
Sbjct: 175 EVWTLCRIFKRIPSFKKYIPTHNNNNNNNQTYPKPQNPNNSNIIFTSKPKTNFQSQPYST 234

Query: 63  DL-------ETKPNPSQQLNLFFPPKNSFFNPSLTLP---YDSFEPSSLYPSSFWNGVDG 122
           D+       ETKP P +QL           NP+LTLP     SFE S +  SS WNGV+G
Sbjct: 235 DIHHLIHLHETKPKPFEQLT----------NPNLTLPSCANSSFESSPICLSSLWNGVEG 294

The following BLAST results are available for this feature:

BLAST of CmaCh01G013190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L479_CUCSA	2.3e-14	41.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608170 PE=4 SV=1	[more]

BLAST of CmaCh01G013190 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh01G013190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199783\|gb\|KGN54941.1\|	3.3e-14	41.33	hypothetical protein Csa_4G608170 [Cucumis sativus]	[more]
gi\|449453868\|ref\|XP_004144678.1\|	3.3e-14	41.33	PREDICTED: transcription factor JUNGBRUNNEN 1 [Cucumis sativus]	[more]
gi\|659133568\|ref\|XP_008466794.1\|	1.6e-13	41.45	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0044699	single-organism process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G013190.1	CmaCh01G013190.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G013190	Cucsa.058790	Cucumber (Gy14) v1	cgycmaB0079
CmaCh01G013190	Cp4.1LG02g02670	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G013190	CsaV3_4G032010	Cucumber (Chinese Long) v3	cmacucB0556
CmaCh01G013190	Carg14790	Silver-seed gourd	carcmaB0437

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G013190	Cucurbita moschata (Rifu)	cmacmoB432
CmaCh01G013190	Cucurbita moschata (Rifu)	cmacmoB439
CmaCh01G013190	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G013190	Wild cucumber (PI 183967)	cmacpiB469
CmaCh01G013190	Cucumber (Chinese Long) v2	cmacuB467
CmaCh01G013190	Melon (DHL92) v3.5.1	cmameB433
CmaCh01G013190	Melon (DHL92) v3.5.1	cmameB439
CmaCh01G013190	Melon (DHL92) v3.5.1	cmameB448
CmaCh01G013190	Watermelon (Charleston Gray)	cmawcgB390
CmaCh01G013190	Watermelon (Charleston Gray)	cmawcgB393
CmaCh01G013190	Watermelon (Charleston Gray)	cmawcgB394
CmaCh01G013190	Watermelon (97103) v1	cmawmB459
CmaCh01G013190	Cucurbita pepo (Zucchini)	cmacpeB503
CmaCh01G013190	Cucurbita pepo (Zucchini)	cmacpeB511
CmaCh01G013190	Bottle gourd (USVL1VR-Ls)	cmalsiB427
CmaCh01G013190	Cucumber (Gy14) v2	cgybcmaB505
CmaCh01G013190	Melon (DHL92) v3.6.1	cmamedB500
CmaCh01G013190	Melon (DHL92) v3.6.1	cmamedB506
CmaCh01G013190	Melon (DHL92) v3.6.1	cmamedB516
CmaCh01G013190	Silver-seed gourd	carcmaB0904
CmaCh01G013190	Silver-seed gourd	carcmaB1447
CmaCh01G013190	Watermelon (97103) v2	cmawmbB449
CmaCh01G013190	Wax gourd	cmawgoB0620
CmaCh01G013190	Cucurbita maxima (Rimu)	cmacmaB054
CmaCh01G013190	Cucurbita maxima (Rimu)	cmacmaB045