CmaCh01G009540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G009540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Cell wall-associated hydrolase
Location	Cma_Chr01 : 6185564 .. 6185924 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAG

mRNA sequence

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGAGAGAGTTGTCTCGCGCCCCTAG

Coding sequence (CDS)

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGAGAGAGTTGTCTCGCGCCCCTAG

Protein sequence

MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDLPALAGVSPHTWSYDFAETCVFGKQSPGPERVVSRP

Homology

[Close]

BLAST of CmaCh01G009540 vs. Swiss-Prot
Match: YCX91_PHAAO (Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-31
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTV+VTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 10 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRLPCHQVTNFLDL 69

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 70 PALGRRQP 77

[Close]

BLAST of CmaCh01G009540 vs. TrEMBL
Match: G7ZYC4_MEDTR (Cell wall-associated hydrolase (Fragment) OS=Medicago truncatula GN=MTR_069s1001 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-30
Identity = 74/106 (69.81%), Postives = 78/106 (73.58%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 157 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 216

Query: 61  PALAGVSPH-----------TWSYDFAETCVFGKQSPGP-ERVVSR 95
           PAL    P             W + F+ +  +G   P   ERVVSR
Sbjct: 217 PALGRRQPPYMVLRLCGDLCFWRHPFSRS--YGAILPSSLERVVSR 260

[Close]

BLAST of CmaCh01G009540 vs. TrEMBL
Match: K4ASX1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. TrEMBL
Match: W9S092_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018826 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. TrEMBL
Match: A0A0V0HWL8_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. TrEMBL
Match: A0A0S3R736_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G442300 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. NCBI nr
Match: gi|965660006|dbj|BAT76425.1| (hypothetical protein VIGAN_01442300 [Vigna angularis var. angularis])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. NCBI nr
Match: gi|703131002|ref|XP_010104773.1| (hypothetical protein L484_018826 [Morus notabilis])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 61 PALGRRQP 68

[Close]

BLAST of CmaCh01G009540 vs. NCBI nr
Match: gi|78103322|ref|YP_358636.1| (hypothetical protein PhapfoPp090 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-29
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTV+VTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 10 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRLPCHQVTNFLDL 69

Query: 61 PALAGVSP 69
          PAL    P
Sbjct: 70 PALGRRQP 77

[Close]

BLAST of CmaCh01G009540 vs. NCBI nr
Match: gi|1012332556|gb|KYP43983.1| (Uncharacterized protein ORF91 [Cajanus cajan])

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL
Sbjct: 340 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 399

Query: 61  PAL 64
           PAL
Sbjct: 400 PAL 402

[Close]

BLAST of CmaCh01G009540 vs. NCBI nr
Match: gi|922367103|ref|XP_013455718.1| (signal anchor, putative [Medicago truncatula])

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-29
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLDL 60
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFL+L
Sbjct: 221 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNL 280

Query: 61  PALAGVSP 69
           PAL    P
Sbjct: 281 PALGRRQP 288

The following BLAST results are available for this feature:

BLAST of CmaCh01G009540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCX91_PHAAO	1.7e-31	92.65	Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana PE=4 SV...	[more]

BLAST of CmaCh01G009540 vs. TrEMBL


Match Name	E-value	Identity	Description
G7ZYC4_MEDTR	1.3e-30	69.81	Cell wall-associated hydrolase (Fragment) OS=Medicago truncatula GN=MTR_069s1001...	[more]
K4ASX1_SOLLC	1.1e-29	94.12	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
W9S092_9ROSA	1.1e-29	94.12	Uncharacterized protein OS=Morus notabilis GN=L484_018826 PE=4 SV=1	[more]
A0A0V0HWL8_SOLCH	1.1e-29	94.12	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]
A0A0S3R736_PHAAN	1.1e-29	94.12	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G442300 PE=...	[more]

BLAST of CmaCh01G009540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh01G009540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965660006\|dbj\|BAT76425.1\|	1.6e-29	94.12	hypothetical protein VIGAN_01442300 [Vigna angularis var. angularis]	[more]
gi\|703131002\|ref\|XP_010104773.1\|	1.6e-29	94.12	hypothetical protein L484_018826 [Morus notabilis]	[more]
gi\|78103322\|ref\|YP_358636.1\|	2.7e-29	92.65	hypothetical protein PhapfoPp090 [Phalaenopsis aphrodite subsp. formosana]	[more]
gi\|1012332556\|gb\|KYP43983.1\|	2.7e-29	100.00	Uncharacterized protein ORF91 [Cajanus cajan]	[more]
gi\|922367103\|ref\|XP_013455718.1\|	6.0e-29	92.65	signal anchor, putative [Medicago truncatula]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G009540.1	CmaCh01G009540.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G009540	Watermelon (97103) v2	cmawmbB516
CmaCh01G009540	Watermelon (97103) v2	cmawmbB513
CmaCh01G009540	Wax gourd	cmawgoB0623
CmaCh01G009540	Cucurbita maxima (Rimu)	cmacmaB050
CmaCh01G009540	Cucurbita moschata (Rifu)	cmacmoB436
CmaCh01G009540	Cucumber (Gy14) v1	cgycmaB0139
CmaCh01G009540	Cucumber (Gy14) v1	cgycmaB0676
CmaCh01G009540	Cucurbita moschata (Rifu)	cmacmoB444
CmaCh01G009540	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G009540	Wild cucumber (PI 183967)	cmacpiB488
CmaCh01G009540	Wild cucumber (PI 183967)	cmacpiB493
CmaCh01G009540	Wild cucumber (PI 183967)	cmacpiB500
CmaCh01G009540	Cucumber (Chinese Long) v2	cmacuB485
CmaCh01G009540	Cucumber (Chinese Long) v2	cmacuB489
CmaCh01G009540	Cucumber (Chinese Long) v2	cmacuB495
CmaCh01G009540	Melon (DHL92) v3.5.1	cmameB396
CmaCh01G009540	Watermelon (Charleston Gray)	cmawcgB381
CmaCh01G009540	Watermelon (Charleston Gray)	cmawcgB379
CmaCh01G009540	Watermelon (97103) v1	cmawmB411
CmaCh01G009540	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G009540	Cucurbita pepo (Zucchini)	cmacpeB508
CmaCh01G009540	Bottle gourd (USVL1VR-Ls)	cmalsiB411
CmaCh01G009540	Bottle gourd (USVL1VR-Ls)	cmalsiB453
CmaCh01G009540	Cucumber (Gy14) v2	cgybcmaB774
CmaCh01G009540	Cucumber (Gy14) v2	cgybcmaB929
CmaCh01G009540	Melon (DHL92) v3.6.1	cmamedB456
CmaCh01G009540	Melon (DHL92) v3.6.1	cmamedB458
CmaCh01G009540	Cucumber (Chinese Long) v3	cmacucB0586
CmaCh01G009540	Cucumber (Chinese Long) v3	cmacucB0594