CmaCh01G009070 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G009070
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase subunit beta''
LocationCma_Chr01 : 5434115 .. 5451629 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATACAACCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCGTTTTTATGTTATATAGACTTGTATCTGACTATTGAGAGTGAGGATATTATACATAACGTCACTATTCCACCCAAAAGTTTACTTTTAGTTCAAAACGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGCGCGGGAACATACACTCTTAATTTAAAAGAGAGGGTTCGAAAACATATTTATTCTGACTCAGAGGGAGAAATGCATTGGAGTACTGATGTGTACCATGCACCCGAATTTACATATAGTAATGTCCATCTCTTACCAAAAACAAGTCATTTATGGATATTATCAGGAGGTTCGTGCGGATGCAGTGCAGTCCCTTTTTCACTCTACAAGGATCAAGATCAAATTAACGTTCATTCTCTTTCTATCGAAAGAAGATATATTTTTAGCCTTTCAGTTCCTGCTCAGGTGTCCTCTCTTCCCACAGTTCGAGCATATCGGTCTGCCATTGGTCGACTCCTTTTGATTCCCATCTTTCCCGCGCGTGCGCCCGTGGGACATCCATGGCTTCTTACCGTCTTTGCAGTTGAAGGAGGACCCGTTGCTCTCGCCGGTGTTATCGAGGAGCTTTAGGCGTGCAAGCCATTCCTCCTCAGTGAGGAGTAGACGACCCTCCTTGTCAATAGCTGAAATGGTATTTTTAAAAATCATCGACGTCATCGACGGATTCGCCGTCCTTAAAGTGGATCTCTGAGAGCTCCTTCCGCAGTTGCTTGATGTTGGATTCCTGCACTCGCTGCACACCGACCCGATTGCACGATGCGCTTGGTGGAAAGAGATGCCAACTCTCTTCATCACGGCGTTGGCCTCTTCGTGGTGTGGAGGAGTGAGTGAGCCTGCCTGAGATGGACCCCACGATGAGTGTGTTTTTACACTTTTCATTTTATTCAACTTGTTTGTTGATAGGTTGGCTCCTCCGCAATGATATACACCGATGGCTTCAACTTGGCTATGATACCACTTGTTGTTTTTCGATAATCAGCCAGAGAAATTCGGTGAGAGGAAATCATCGACGTGAGGTTGTTAGAAGAAAAATAAAATGAGTAAAATAAAAGAGAGAGAATGACTGAAATTTTGACTGTGTTCAAAATCAGGTTATTCGATATTCTGAACAGATTTTCTGTTTAAATATAAACTATCCTAAAAGTGGCTGAAGAGTGGCCAACTAAATCTGTGCCACTCCCTACAAAATTGCCGTCTAAAACTTTGGTGATCGATTCGACGTGTTTTGTCAAATGGTCAAACAGAGGTATTCTGAAATCGTGTGAATCTAAATAAGAAACAACTGAAAAAACCCAGGTTTTATCTAACAGCAGTTTGGTCACCTCTACTTCGAGCCCGCGTGCCGCTAGTCTAGGTGGTTCACCTCCTCCTATTAGGTCTTCCATCCTCTAGTACCTGGCCACCAAATCATCATCGTGATCAGCATCCAGCGTTGAATCCGCAGTACGTGGTGTTGCGAACTCCACTGGTTCAAGGGGTGCAGCTGGAGTTGTGGTTGGGGTTGGCATAGGCCTGCCCTGTGTAGCTACTGGCAGCGGTGATGGTTCTCGTTGCTTTGCTTCTTCTTTCAGCTCGATAAGAGGTACTCCACCGTGAATTGATTAGGTTTTGGTCCACCTCGGTCACGTCGTTCCACTACTAGAAGGTTCTCTCGTTGAAGATGACATCGCGCGGCACGTGAGCTCACCCCCCCGCAAGATCATAGAGCCTGTACGCCTTGCTACCGGGTTTGTAGTCGATGAAGATGACCTTCAACCCCCGGGATCGAGCTTGGCGAGGCGGGGACGCACAACCTTCATGTATGCGACATAGTTGAACACTCGAAGATGATGTACCGCTGACTTCTTGTTGTATCAGGCCTCATGTGGCGTCTTCTCGTCGAGGCTTCGCGTTGGTGACCAATTGAGGAGGTAGATGGCCGTCATTACCGCCTCTCCCCAGAACCTCCCAGGCATCTTGGTCGTCATCAGCAATGACCTTGTTGTCCTGACGATAGTCTGATTTTGGTGCTCCACCGTCCCGTTTTGTTGGAGGGAGTAGCGCACCGTTAGGTGCCGCTTCATGCCAAGCTTGTTGTAGTACTTACTGAAACTCGTCGAGGAGAATTCTCTGCCTCGATTCGTGTGTAGCACTCGCATCTTCTTCCCGCATTTGGCCTCCGCTCGTGCTTGAATGCACTTAATCGCCTCAGCCGCTGGTTTGATGGGCCAACAGATATCGTCGTGCACGAGCTCTAATGGCTCATCGACGATATAGGATGCCTGAGACGGAAAGGGGGTGCGCCTTTACTTGCCGATGAGACACCCGTTGCACAACCTGTTCACGCCTTCGATTGCCGGCAAACCGTGCACCATCTCTTTCTTGTATAGTTTTTGTATAGTATTTGAATCGTCTGTCGTTTTTTGACTAAGAAAATCAGAGGAAATCGTTGATGAGGAAAAAAGCCGAAGGAAAATCTTGAAAGAATAAAATAACAGAAAAACAAAGAGAGAGACAGTATTTCAGATTCTGCGCTAAAGACGGATGATTTTATTCTCATAGAATTGGATATTTAAATAACAATTATACCCTAAAAACGGAAAGGAGTAGCGACTTAATTAAAGTCAATCTACTCGTGTACATCCCAAAAAATAGTAACTAAAAATAGGGATGACTTTTAAGGTAAAATAGGGATTTATCTAAGATCATCCTGACTGCTTTAGGTCAGAAATTTTTAGGCACTTTCTTCTATGTCATGTAGCTCTTTTACCAAGTTCATCACGATTTTTGCGTTCGTCCACTCCATTTTGTTGTGGGGTATAGGCTGAAGTCAATTGTTGTGGGTTCGGCCACTCCATTTTGTTCGACCACTCTATGCTTTTTGCATAAATCGATGACTTCTGCAGAGTTGAATTCTCCTCTTATAACTGTCCTTAACCATTTTATTGGCATTCTAATTTCCTTTTCTACCATTGTTTTGAAACATGAAATGATAAAATGTTTTTAATTTTTGTACAAGAAAATAACTCTATGCCTTCCTTGAAAAATCATCTACATAGTACAAGTACTTTTTCTGGCCACTTGAAGCTTGTGAAATTGGACCACATAGATTTGTATGAACAAGACCCAATTTTTCCATTGCTCTCCATTTACCCATTTTTGGAAATGGAGTCTCATGTTGCTTGCCTTTCATACATGCCTCACAGGTGGTGTTTGGAGTTACAATTTGCGGCAGACCTTTCACCATGTTTTTGTGTTTCGATGTGCATAAGCCTTTGTAGCCGAGATGACCATAACGATGGTGCCAAAGTGTTTACTGATCCGTATTTGAAACTTGGAGGCATCTTCCTCCATTTGTTGTAGTAGATGGTTTAGTACGCAAAATAAACAATCAATTTGTGCTTATAATTGACTCTGTTATTTTTCCTTTTTGTGGATGATAAATGCTACATACACCATTTTTAAACAACACTGATAGTCCTTTTTCTTGTAATTGTCCAACTCTCAAGAGATTAGTTTTGAGCTCAGGTACCCAATACACATTACTAATAGTGCAACGAACCCCATGCAAAGTTAAGTTCACTACACCCTTTCCCATAACTTTCATAGTTGTATTATTTCTAAGTTTAACAATGTGGAAAAATGTCTTTTCTAAACTTGAAAATATACCTTCACTTACACACTTATGGTTTGAGCAACTAGAATCTAAGAACCAAGTATCACTCATTTTTGCTTCATGTCTTTTCATATGAGTCATTAACAACATTTCATCCTCTTCTTCCAGCTCTGCATAATTCAATTCGTTATTCATCTTTGGACATCCATATTGAAAATGACCTAAGTCATGACACCTACAACATTCAACAGTTGCTTTATTGAAAGTTGATCTTCCTCTTCCGTGTCCTCTGCCCTTGTAAGTTCATCATCTTCTGCGTCCTTTACCCCTGTAAGTTCCTCTTCCTTTGTTACTTATTTTCGTTCGTCCTTCGACTTTTAGAACTTGCTTCTCTCCATTAATGCTAGATCTTCGAAATTTTTGTTCATGCACCACTAATGAACTTTGTAATTTATCAATGGACATGTTATCTTGAATTCCTCAAAGATACTACTACATAAGTAAATTTTTCAGTCAGGGTACGTAAAATTTTTTATACAATTTTCTTGTCTAGCATATCTTCTCCATTGCTTCTATCTTGTTAGAGATTATCATCACTCTTACAAAATAATTTGTGATACTTTCATCATTCTTAATCTCTAGGATCTCAAATTCTCTCCTTAATGCATTAAGAAGAGATTTCTTCCCTTTTTGGTTTCCACCAAATTTTCTTTCATTGAGTCCTAAACAATCTTGGTTGTGCGACGATCCAAGATTTGTTCAAAAACAGTACGATCAATTGCCTAGAAAAGGTAATGTTTTACTTGGTGATCTTAGGGTCTAGCATCATCAAGGTGGCCCTTTTGTGCCTTAGTCAGCATTGTTCCTCTAGTTCTGAGATACCAATCTCCACCACTGTAACGCCCCCAATTTTCTAAACCTAATTAGTGACGTCACCCGTGCATACATATCATTACGCGGAGCTCATCATAAATAACCTTGGAAACAAAACAAAGTCTTCCATAAAAATTCATAAATCCAAAACAACCTATCTTAAAAGAAAAAAAAAAAAGCCTTCAATAACCGAATTCAAAAAAAATAAATCTAAATAAAGCAATACTTAATACTATAACTTAAAACAGTCCAATAAACGTAAACTCCTACAAATATCCCATCTCCAACTTCCATGGTGTCCTCAGCTCCGCCGTCAACCGTACATTGGCGTCTTGCCTTTACCTGAAAAATGTAGGTAGCACGTGGCTTAAGTATTTTATGAAATACTCAGTAAGTCACCCCACTGTTAAGATTAGGAATGCAAACACATGCAACATATGAGCGGGACCTAACTTTTCATAAACTTTACATGGCCTTGGATGCTTTTCTATTCCAGGTAGAGTTGGATGCGTGGTACTCCTTCACACACGGCCCATGTACGCATACATGGACCCACCAGACGGGCTCGTATACAAACCCCCTAGGCCTGACTTGGTCGGGCACACGTGTTACACGTTGTCGGACACTACAGAACAGAAAATGACCCGCATGATATCATGGCGAATATAAATATCGTAATTCATTCTATCGTATCATAAAAGGGAAGAATCCCGATACACGTGACATACATATATGCATGAGGTCCCTTGACATATCTAACATGGCATTACATAAGTAGTACTAACATCGCATATACGTTTCTTACATTACATGACATCTCACATGACCTACATTACATGACATACTACATAACATGAAAGTACATTCCAGTTGCATAAACATCCCATGATAGGACTCGATAATTCTACGTGAATCTATGAGATCGATCAACATATTCATTGCATATAATACTAACATCTCATTCATAACTTCACATAACATAAACAATCAACAATCAACATAATTCATACATCATATAACATACACAATCTACAGTCAACACAATCTATACATCACATAACCATATCACATAAATATGGTGCATGCAGGGGCCACAGGGCATGCACCATCATACAACACGTAGTAAGCTAATTCCAACAGTAAGGTCACTTACTTCGATGGTCTTGGTTGAAGTCACTCACAACGAGCTAATCCCAGCGGTTAAATACGTCCTATGATAACCATATAAAAACTTAAGAACCTTTCATAACATACCCTAGCTAAACCTCATGCTATTTATCAAAATAAACCTCCGACCTAATATGTCTTTAACGTTTAGGAACTATACTAACCTCGGATGGATGGTAAAACTAAGGGCAGGCTTTGGAAGGGTCGAAAACTTAGAAATCGATATATTATAGTGATACCGAGTCACCAAGCCGAGCTTCCGAGCCGACCAACTAAGCCGCCAAGCTGAGCTGCCGGATTTGACGGAGCCGAGCCGCGGGTATTGATGGAGCTGAGCTGCTGTACACGTCAAGCCGAGTCGAGACCAAGGCTGCAGCGCCCGTCCATGTTGGGCCGAAACGCACAGGGCCCGCGTTCGTTTCGTGGGCCGGTTCAGAGGCTGAAACCCGACCCGACTTTGCGTCTTCTTCGCTTGAACCCTCACGAAAACCCTAATCTGATGTGCCGCTGCCGCTGCCGACGCCGATGACGCAATCCCTTCGTTTTGACGGTTTTCCTTCTTTGACGCAACAATTCCGACGTTGATGTTAACTTCCACTCGACTCTTCCTCCAAAACAACAACACAATCGATTTCGAGAACTCACCGAGCATGAAAACTACCCAGCGAACCACCCACTCGTTTTCCTGGCTAACACTCGATTTTTCCGTACGAGCGTGTCAATTTTGGAGAGCAAAAGTCGTTTTCCAAATAAGGAGGAGAGTTGAATAGAGGAATATAAAAGGTCTTTATTGACTTTTCCTTTAAGTAACTTCCTTGTTAGAAATCGCACAAGAATAAATGCTATTAGAAATAACACTTTTTTCGGTGAGAATAAATGCTATTAGAAATAGCACATTTTCCGGTGAGAATAAATGTTATTAGAAATCGCACCTTTCTCGAAATTGCACATTTTCCAGCGAAAAATGCTAGCATAATATCTTTTCATTTTGATAGCAAAAATAAAAATCTCAGCATGAAATCTAAAATAAATAAAACAAAAATTCGAATCCTTACAAACACACTTCATAAACCCTTTGCTCTTAGTAAATTTTCCATCAGCTCACTCCAATGATCATAGTGACCATCGAAGTGAGAGATCTTCGCTAAAATTTTGTCTTCACTCATACTCTCTCTATTTGATCACTAAAAAATTGCACCTCTAATACCAATTGTTTTGTTAAGTTTTGATAGAAGAATAATTAAGCCAGAAACATAAGCAATTGAAGTGACTAATTGATTAGTTAGGTTTTGATAGAAGAATAACTAAGCCAGAAACCTAAACAATTGAAGTGATGGTATTATTGAATAAGCTTTTATAGCTTTACAAATAACCATAGTTTTATACTTTACAAATAACCATAAATAGAAACTAAGAAACAAATCTCAAAAAAGAAACTTAGTAATCTCCAATTACTCTTTAATCAACGGTTTACTTATTTTAGACTTCAATTTGAGGCGAATTCAGAATTGTTCTATTTGTATAATCAACAACTGCTGACATTGGTAAACGACCCAAAAAAATTTGATTATAATTCAATTGGGGATGATCATAAGTACAAAGTTCATATTCTTCTGTCATTGATAAACAATATGTTGGACAATATTCAAAAGCTCATATTCTTAGGTCATTGATAAACAGTTTGTTGGACAATATTCAATGCAGTTATCCAAAATATAATAAACAAATATTTAAACTAAATACCTAAAAATACTTACTATTTTGACCTAATAAAATTTTTTTCTAACACTTCCTCCCCTCGCAGTCACTATTTTGACCTAATCAAATTTTTCTAACATTTTCCCCTCGCCCACCCTCCTGATCATCAGGCTGGAGAAGGGAACCTGCCTTGAGCTCACCACCTGGTAGCCCCCTGAGCCGCAATGCGTTGCGCATGGATGATCAACTGGGGGGTGCATTCAGGAGAGCCTCATCACTCACATATTCTAGTGGGTTGACCCCTACAGGAAATAGGTGCCTTAGGAGGGGGAATGCACTCACGTAACTTCTCCGTAACTCTAACTCTAAGCGAAGAGGTAACTTCTCCACCTCTCACCACGAACCTCTCATCCCTTCCCACAATTGTCGCTCTTCAACCCATCCTTACTCTAGAAAGTAACAATTACTGTACAAATAAACATAAAAACAATAACAGTCAGATTTACTTGAGAAAAAAAAAAAAAATGAGAATGACCTTTACCCATTTGAGATTCATCCGAGATTCACGTGAAGATAGATTTGATCAATAAGGTATATATTAAATTTCATTTTCTTTTATCCTATTTTTTTTAGAAATCACAATAGTCAGATCTTCATTGTATTATTACAATGGTCTAGCTTTGATTTAGAAACTAAATGTCAATCATTTATACGATTCTAGTAAATCACGTTAATAATATCAGATTAGTAATATCATATTAAGTTTTTATTAGTAGCCAAATGAATAGATTAAAGATAGAATGACCAAGAAAACTTTTGAATAGGAAATACTGAGATAAGGAAAGATTTGGAAAGAGAGATCACTAGAAATTTGGAATATATGAGAACATAATTAAAACACAACAGATAACAAAAAAAAGAAGCAACAGAGATTACTAGAAATTTGGAATACATGAGAACAAAATTAAAACTCAACAGATAAAAAAAGAAGATGAGGGAATTAAAAACCACAACTAAATATAGAGGGAAAAGTAAATACAGAGTAGTAAAGTCCAGAATAACTTGAAATAGCTCCTATAACAGGAAACTGAAAAATAAGATTTTTAATACAAATATAATTATAGATATATAACAGACTTTTAACAATGAACCAATGTAAATTAGAGAAATAATGTTGTAGAGTTCAAACCTGAAACTAATGTCATGGGCTCATATAGGTTGACTCGGTTTTCAAGGACGAAATCGAACATTCATTAAAGATATATTCGTGATAACGACTTAAGCTAGCCAGGTAAGTGACCTTACTATCGGCATAGTTATATTTGTTATTGACACGTGCCCCGTGGTTCTGCACTTGTCATATATATTGATATTTGTGAATTGTCTGTGGATCGATATGCTTCTTATTTGTTATGTATAGGTTATAATATGTGAATTGTTTGATAATAATTACGGTACGATGTGTTCAATGATATGTTTGAGATAGGATACGAGAAGAATGCACAAAACGAAATGTAACGATAGGAGTAAAATATGTTCATGAAACGTTAAGGTTAGGTTACATATCATAGTGATATGGATAAGAGAGATGAATGGAAGAATACGGTTAGGCTACGGGTAGAAAGAGATAGGTTTGTGATAGATTAATAGAATGATAGCGTTAGGAATGATAGAACGATAGTATTAGGTTACGTTCTTGTGATGATATGACTGAGGTACGTTCACGTAATGATATGTCTTTGATAGGTATAAGAACGTTAAGGCTATGATAAGTTAGAAAACGATATGACTATGATTTACGTTATAACTTGCTGATGTTATGATGCATTGTGATGTAATATGTTATGGTATGATGTGTATATGATGAAATGTTATGTTAAAAGCATAGAACATTATGTTAGGTCTCTTAAATTGTGTGTATACAATATGAATTGTATGACATGAAACACGGTAAACTGTCTGGAATCATAACCTCGATAGAAATATGTATGAAATGTGAATTGAAAATGAGAATGACATGAAGCATGGAACGTGACAGGGGGGTTATGATCATTAATGATAAGTGTAGAAGTACGGGAGACCTCATGCATTATGTGTGTTCATGCATCTGGGGGGATACCCCTATCCCATCACGAGGGTACAGATGCGTACATCCAATGGCAGGACAACGATCGTTATGCTTTGCATAGCGCTGTTGTGACGGTTCTAGTTTTAATGGGTCCCGACATAAAGGGCTCCTAGAGTATGCCCACCGGATAAGGAAAGTGGCCCATCGGCGTGCGAACTAGTTGGTGAGCCCATACTCGCACGTATGGGCTGTGTGTAGAGTATATGGTACACGTCCACGATTACCCGTTAGGACTGCACCGTAGGGAAAACGAAACGAAACGAAACGATAGGTCCCATCATTTCATTGCATGTGATTGTTGCGTTTAACCTCAATAGTGGGGTCACTTACTGAGTATTTCTTTAAATAGTGAAGCCATGTGCTACTACATTTTTCAGGTTAAGGCAAGGTATTCCTGTACGGCTGACGACGACATCGCAACTCGAGACCATGGCACATGCATAGGATAGTGGTATTTATTTTCTTAGAAGGCTAGAATAGGATTTTTTTTTAACTTAAACTCTTATCTATTTTATTTAGTCTTTTGTTGTGTCGTTTTAAAGAAGTTTTCGAAACACTAAGTCCATGGCTGTGTTTTAAGATAAAGGTTATGTTTTATGGAATTTAAATAAAGTCTTCCGCTTTCAATGTTTATGGTACGTATATAGTAGTGACCTTAAATTAAGTACAAAATTTCGGGTCGTTACAGTTGGTATCAGAGCTCTAGGTTATAGATCTTGTAGACTAGCCTACGATGTAGGCTTGACATGTTCCATGGTCCCACCGTTGATGCCCCGTCTCCGTTAGGTATGTCTTGCTTAAGATAAAAAAAAAATGAAATGTCGTTGATTGTGTATGTTGTTATTGCTTGGTCATTATAAAATATAACTCATAATTGGAGTTTTACACTATTGATTGTATTATAATTTACTGCATTATTGTTGGCTTAATTCTTATTTATTAGAACGTGGAATATGTTATGTTTTATCTTGCCTGGAATGTGAATGTAAATTGTTGTATTGATGATGTTTAGATTTACTAAGATTGATGATGTGAATGAGTAGCTATAGTTTTAGTAAGCTACTAAATGTTAGTGTATGCGTGAAAATGATTTTTCTAAGCAAGATCATATGTTTTAGTTAGACGTCTCGAACATAGATAAACTACACAGTCTTATGATCATAGAGATGGAAATGATGTACCAATGTATTCTGAAGAGTAAGTAGTTTTAGATGAAATAAAATGACCTAAGAAGCTTGATAGATGTTAATATCTTATAGTATACTATAGATATTAAAAGTGGTAGTGTCTGAAAGAAAATTTTATAACTTTGAAGTATGTAAAGATGAAATTAAAGTATCAAAAAAAAAAAAAAAAGTTTGAGTGAAGACATAAAAGTTTAAACGTTTATACTTAATTGATTGATTGGCGAATGACAAAAATGCCTTTAATGGAAGCTGAGCTTTGGAAGTACTGAGATGTAGAAAACTTTCCTGCCTTAATACGAGTTGAAAATTAAAAAAAAAAAAAAAAACAAAAAAGTAATACAACCGCAATTATGAAAGTGAGATGATTTAAAAGTATCGAGCCACAGTTTGGATGAGACATTACGATATGGCCAAAATTTTAGAGGTATATGGACTGAGATTGTCAAGATACCTTAAATTTAAGAAACCATGATTTAAGATGAACTTGGGTGGGGATACATGAGGATTAGGGTGAGACATTGTCTCTAAATCAACTAGAAGTTTTGTGGTAATCCTCCTTCAGGTACACGAATGCACTCAGGAAGCTCGACATAAACAAATTGCTGTAGGAAATGACCGATAAATTTTTCCTAGCAATGTCAACCTGGTTAAAAGGTATTACATAGTTAAAGTTTCAAGACTATCATTTTAAGTTTGATTTTAAAGTATCCCAAATTTTATGGCATCTGAGGATATCCACCATGCTTATATAATACCAATTTTTAGAAGGGAATTTTGTTAAGCCCATTCTTGATATTACAAAGGCGTTAAAAGGGTTGTGACGTCTTTCCATTATGGTTATAGAAACATTAGTTTTGGGGTTGTACTAGATAAGGTATACCAAAAGAAAAGCCTATTTGACAATGTTTACCGTGGAAGTTACCAAAATCTCAAACTAGAGCTTGGCCACAAATCAAATACGGTAAGTCGTTTATAGATCCATATGATTTCTAGTGCATTCAATTTGCATTGGGTTAGGGTGAAGTTTTTAACTCATGTCATGATTTTGACTCCAAAAATTTACTATAATTGGGGTAGGTAGTCGAAAGAGAAAAATATTACAAATTTCTTGATTTTGTGGGAAAATAGGCAAATTTGTATATGGAATTCATCTGCAAATATGAGACATTAATGATGAACCAAATCAAGTGGACACTTACAAACAATACAAATACAAACAATAATGAGGAAAGGAAAACAAATCTTTTTTTTTTCTTTTTTTAATTATTAAAAATATAGAGAAGGAACAATTTTAATTAGAAATATTCCTCTAATGACTTCTTTGGGAATTTCTATAGTAAATGGACTATATACCAAATAGTGATTAGTCAAATATTGCAAAACCCCGGTATCTATTGTCGGTCAGAATTGGACTATAACGAAATTTCGGTCTATACCAGCATCGTAATATCTTATTGGGGAGGAGGATTAGAATTAGAGATTAATTGAGAAGCAAAGATATGAACATGTGTGAGTAGGAAACAAAAAAATATCTATTTTAGTTCTATCATCAGCTATGAGTTCGAATCTTAAGAGAAATTCTCGAGAAGGTTTCTACCCTGAAATTTTTTTGTCTTTCTTTAATGATAAGGAGAGAAAAAAATTTGGATCAAAAGAAAGTGCCATTTTGGAGTTTTATCAACAATTTTCTTGTGTAGGTTGAAATCCCGTATTTTAAAATGAGATTTTGAGGATGTATGGACAAACAAGTTAATTAGTGAACCTTTAGCTAACCGTAGAGAATCTGATTTGGAGAACAATGTAAATCAGAAACTAGTAAAACTATTGATCCAGTAGATGGAATCATAGTGAAAAAAAAGAAAAAAAGAAAAAAAAAGTGAGGAATTATGTAAGTTTTCCAACCTTATTGTACACACTAACATTTATTTCAATGAAGTGCCTAAGCCACAAACCTTAAATGAATTATGTTGCCCATGAAATTTTAGAAAAGACTCAATATGACATGATAATGTTATGTACGAAATTTGGTGACCACTAGGTTATGATAACGGGCTAAACCAAGAATAGGTGTAAAATGACTAAAATGCCCCTATAATTATGTACCGCTAGTTCTTTTACCAAGTGACTTCTAAATGACATGAAATTTGATGAGAGCCTTATGTCATGGTGTAAAGGGATTACACAAAGTTACAAGGCCATTAGAATATGTGGAAGAACTAAACCAAGGTTTGGGGGGGGTAAATGACCAAAAGACCCTTATGAAAATTCTATGACGTTTTCAAGATCCTAGAAGACTCAATATCATAAATAGGTCTTATATAATTTGACTTTAGGGAATTATAAAAATTTTAGAGTATGAATTAAGATTTAAAATACATAGCTATCCGTCAAGACACGTTATAAAAAATCAAAGATTTTAAGAATACGAAGTGATAGGCTTAAGAAAGTTTTATGCATGCAAATAAATGTTTATGACTCATATGGATTAGAGTATATTTGTTAAGAATTTTTCTTGAGTTGAACTTCAAGACTTAACAAAGAACCCTTAGAATAAGGACTCGAGTTATCTAAGATTAGAACACTTTCCCGGACAAAAGTTTCTTTTAGAGGGATATAATGTAATAGCCCAAAATAATAATAATAATAATAATAATTAGTTAAAATAATAATAATAAATAAATAAACCATCCACTAACCTCCACCTTTACCCATTTGAGATTTATTACCCATTTGAGATTTATTGGAGATTCACGGGAAAGATATATCTGAGCAATAAGGTATATATTAAATTTCATTTTATTTTATCCTAGTTTTTTAGAAATCACAACGAATTTTAGTTAGATCCTCATTCAATTATTACAATGGTCTAGCTTTGATTTAGAAACTAAATGTCAATCATTTAGTAAATCAGGTCAGATTAGTAATATTAGATTAAGTTTTTATCAGTAGCGAAATGAATAAATTAAAGATAGAATGACCAAAAAAACTTCTGAATAGGAATCACTGAGATAAGAAAAGATTTGGAAAGAGAGATCACTAGAAATTTTGAATACATGAGAACATAATTAAAAGGCAAACAGATAAAAAAGGAGAAATTAGGGAATTAAAAACCACAAACTAAATATAAAGGGAAAGGTAAATACAGAGAGTAGTAAAATAGAATAACTTGAAATAGCTGTATCTACCTTTCTGTTACATAAAAATGAGTTTTTCAGTTTTTCCTTATTTAGATTCACATAGCTGTATCTTCTTTCTATTACATAAAAATGAGTTTTTCAGTTTTTCACACGATCAAATTTAGTTGGCCACTCTCCACCATTTTAGGATTTGTTCAGAATATTGAATAACCTCATTTTGAGCAGTTAAAATTTCAGTCATTCTCTCTCTTTTATTTTACGCATTTTATTTTTCTTCCAACAACCTCCCGTCGACGATTTCCTCTCACGGAAATTCTCTGGCTGATTATCGAAAAACAACACTTTCTATACAACAGTAACTATGAAAAATAAGATTTTTAATAAAAATATAATTATAGATATATAACATTTCAAGACTTTTAACAATGTACCTATGTAAATTAGAGAAATAATGTTGTAGAGTTCAAACCTGAAACTAATGTCATGAGCTCATATAGATTGACTCTGTTTTCAAAAGACGGAATCTTCATTAAAGATATATTCGTGACAACGACTTAACCTAGTCAGGTAAGTGACCTTACTATCGGCATGATTATATTTGCTGTTGACACGTGCCCTATGGTTCTGCACTTGTCATATATATTGATATCGTGAATTGTCGGTGGATCGACATGCTTCTTATTTGTATGTATAGGTTATAATATTTGAATTGTTTAATAATAATTTTGGTACGATGGGTTCAATGATATGTTTGAGATAGGATACGAGAAGGATGCACAAAATGAAATATAACGATAGGAGTAAAATACGTTCATGAAACGTTAAGGTTAAGTTACATACCAAAGTGATATGGATAAGAGAGATGGATGGAAGAATACGATTAGGCTACTAGTAGAAATTGAAATTAATTGAATGTACAATTAAAAAAAAAAAAAACGTTTATGTGGTATTCCATATATTCTATATATTCTAGAGTTCTTTACCTTGTCAATTCAATTTCCAATTCTTGGTCATTGAGATTCATGGGCAATACCGATTAATATTTTAAGGATAGATATTACCTCTCCTTTTCCTCGTTCAACTAAATTGAAATGATTGAAGTTTTTTTATTTGGAATCGTATTAGGTCTAAGTCCTATTACTTTGGCTGGATTATTTGTAACCGCATATTTACAATACAGACGGGGGATCAGTTGGACCTTTGATTAATTCGGAGTGATATGGATAAGAAAGATGGATGGAAGAATACGGTTAGGCTAGCAGAAAGAGATAGATTTGTGATAGATTGATAGAATGATAGCGTTAGGATTGATAGAACGATAGCATTAGGTTACGTTCCTGTGATGATATGACTGCGGTACATTCACGTAATGATATGTCTTTGATAGGTATAAGAACGTTAAGGCTATGATAAGTTAGAAAACGATATGACTACGATTTATGTTATGACTTGTTTATGATATGATAAATTGTGATGCAATATGTCATGGTATGATGTGTATATGATGAAATATTATGTTAAAAGTATAGAACGTTATGTTAGGTCTCTTAAATTGTGTGTATACAACATGAATTGTATGACATGAAACACGGTAAACTGTTTGGAATCATAACCCCGATAGAAATATGTATGAAATGTGAATTGAAAATGAGAATGACATTGCATGGAACGTGACAGGGGGTTATGATCATTAACGATAAGTGTAGAAGTACGGGGGACCTCATGCATTATGTGTGTTCATGCATCTGAGGGGATACCCCTATCCCATCACGAGGGTACGGATACGTACATCCATGGCAGGACAACGGTCGTTATGCTTTGCATAGCGCTGCCATGACGATTCTAGTTTTAACGGGTCTCGGCATAAGGGACTCTTAGAGTATGCCCACCGGATAAGGAAAGTGGCATCCAATGGCAGGACAACGATCGTTATGCTTTGCATAGCGCTACCGTGACGGTTCTAGTTTTAACGGGTCCCGACATAAGGGGCTTCTAGAGTATGCCCACCGGATAAGGAAAGTAGCTCAGCGGTGTGCGAACTAGCTGGTGAGTCCATACTCGCACGTATGAGTAGAGTATATGGTACATGTCCACGATTACCCATAAGGACTGCACCTACGACGAAACGAAATGATAGGTCCCATCATTGATTGTTGCGTTTAACCCCAATAGTGGGGTCACTTACTGAGTATTTTTTAATGCTCAAGCCATGTGCTACTACATTTTGAAATACTCAAGCCATTTGCTCCTACATTTTGAAATACTCATGTGCTACTATATTTTGAAATACTCAAGCCATGTGCTACTACATTTTGAAATATTCAAGCCATATATTTTGAAATACTCAAGCCATGGGCCACTTACTGAGTATTTCTTTTAATGGAAATATTCAAGCCATGTAGTACTACATTTTGAAATACTCAAGCGATGAAATCAAGCCATGTGATACTATATTTTGAAATACTCAAGCCATGTGATACTACATTTTGAAATACTCAAGCAATGTGCTACTACATTTTGAAATACTCAAGTCATGTGCTACTACATTTTGAAATACTCAAGCCATGCGCTACTACATTTTAAAATACATTTTTTAGGCTAAGGCAAGGTATTCTTATGCGGCTGACGATGACATCGCAACTCGAGACCATGACACATGCGTAGGATAGTGGTTTCTTAGACTTAGAATAGGATGTTTTCAACTTTAAACTCTTATTCATTTTTTTAGTCTTTTGTTGTGTCGTTTAAAGATGTAGGCTAGAATAGGATGTTTTTAACTTTAACTCTTATTCATTTTATTTAGTCTTTTGTTGTGTCGTTTTAAAGATGTTTTCGAAACATTGTAATTCTAATTTCATGACTATGTTTTAAGATAAAAGTTAAATTTTATAAAATATTGATATTACAACAAATTTTGTTTTATTTGAACAAAATCTGGTAATATAAATAGATACACAAAAGAATAGTACGAATCTCCACCGTCCATGATCATGCCTTCAATCCACTACACTTAGCAACACCAAACCCAATTCTCTTATTGCTCAGATCGTACTCCACCCACATATTCTGCTGATGAACGTTCCCGATTATATTACTCTCAGTCACAAGTCTATCTGACCGTCCGATCCCCACGCACTTCACCCCTTTCTCCACTTCCGTCAATAACCCTTCCCCTTTCCCTACCAATATCTCCACCCCATTCTCAAACTGGAACCACATGTCGCCGATCCTCCGACCCACCACGGCCGCCACTGCGCCGTCGAAACACATGTCGGCGACGGCGGCGTATTCATATCCTTTCTTCATCATGGGCCCCACTAATCTCACCATCTCTGCTCTGACCTTGCTGTAG

mRNA sequence

ATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATACAACCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACCTATGAGTTCGAATCTTAAGAGAAATTCTCGAGAAGTCACAAGTCTATCTGACCGTCCGATCCCCACGCACTTCACCCCTTTCTCCACTTCCGTCAATAACCCTTCCCCTTTCCCTACCAATATCTCCACCCCATTCTCAAACTGGAACCACATGTCGCCGATCCTCCGACCCACCACGGCCGCCACTGCGCCGTCGAAACACATGTCGGCGACGGCGGCGTATTCATATCCTTTCTTCATCATGGGCCCCACTAATCTCACCATCTCTGCTCTGACCTTGCTGTAG

Coding sequence (CDS)

ATGGGCCCGCGATGCATTGGCATACGAAATCAAGATATTGGTATTGGACTTATCAATCGATTCATAACCTTTCAAACACAACCAATACAACCCTTTACTTGTAGGAGTACATCTTGGATCTGCCGATTATGTTATGGACGAAGTCCTACTCACGGGGACCTGGTCGAATTGGGAGAAGCCGTAGGTATTATTGCGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATTCAATGAGGATTTGGTTCATCCCACACCTATGAGTTCGAATCTTAAGAGAAATTCTCGAGAAGTCACAAGTCTATCTGACCGTCCGATCCCCACGCACTTCACCCCTTTCTCCACTTCCGTCAATAACCCTTCCCCTTTCCCTACCAATATCTCCACCCCATTCTCAAACTGGAACCACATGTCGCCGATCCTCCGACCCACCACGGCCGCCACTGCGCCGTCGAAACACATGTCGGCGACGGCGGCGTATTCATATCCTTTCTTCATCATGGGCCCCACTAATCTCACCATCTCTGCTCTGACCTTGCTGTAG

Protein sequence

MGPRCIGIRNQDIGIGLINRFITFQTQPIQPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTPMSSNLKRNSREVTSLSDRPIPTHFTPFSTSVNNPSPFPTNISTPFSNWNHMSPILRPTTAATAPSKHMSATAAYSYPFFIMGPTNLTISALTLL
Homology
[Close]
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match: RPOC2_CUCSA (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-61
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIG+RNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match: RPOC2_EUCGG (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-59
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCI IRNQDIGIGL+NRFITF+TQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFN+DLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNDDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match: RPOC2_TOBAC (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 9.3e-59
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCI  RNQDIGIGL+NRFITF+ QPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match: RPOC2_NICTO (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.3e-59
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCI  RNQDIGIGL+NRFITF+ QPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match: RPOC2_NICSY (DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.3e-59
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCI  RNQDIGIGL+NRFITF+ QPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TrEMBL
Match: A0A0S2IH42_CUCPE (DNA-directed RNA polymerase subunit OS=Cucurbita pepo var. ozarkana GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TrEMBL
Match: A0A0S2IFH3_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TrEMBL
Match: A0A0S2IFP5_CUCMO (DNA-directed RNA polymerase subunit OS=Cucurbita moschata GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TrEMBL
Match: A0A0S2IG43_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis subsp. martinezii GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TrEMBL
Match: A0A0S2IDT9_9ROSI (DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. TAIR10
Match: ATCG00170.1 (ATCG00170.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-56
Identity = 100/116 (86.21%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           +G RC+  RNQD+GIGL+NR ITF TQ I    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 257 IGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 316

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NGKIKFNEDLVHPT
Sbjct: 317 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNGKIKFNEDLVHPT 372

[Close]
BLAST of CmaCh01G009070 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1 

Query: 55   VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTP 114
            +E G A+G I  QSIGEPGTQ+TL+TFH  GV +    + +  P   +I  N      TP
Sbjct: 1035 IEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGV--PRINEI-INASKNISTP 1094

Query: 115  MSSNLKRNSREVTS 129
            + S    N  E+TS
Sbjct: 1095 VISAELENPLELTS 1105

[Close]
BLAST of CmaCh01G009070 vs. NCBI nr
Match: gi|952954904|gb|ALO22260.1| (RpoC2 (plastid) [Cucurbita lundelliana])

HSP 1 Score: 236.5 bits (602), Expect = 4.2e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. NCBI nr
Match: gi|952954854|gb|ALO22211.1| (RpoC2 (plastid) [Cucurbita foetidissima])

HSP 1 Score: 236.5 bits (602), Expect = 4.2e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. NCBI nr
Match: gi|952954943|gb|ALO22298.1| (RpoC2 (plastid) [Cucurbita andreana])

HSP 1 Score: 236.5 bits (602), Expect = 4.2e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. NCBI nr
Match: gi|952954768|gb|ALO22126.1| (RpoC2 (plastid) [Cucurbita ficifolia])

HSP 1 Score: 236.5 bits (602), Expect = 4.2e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

[Close]
BLAST of CmaCh01G009070 vs. NCBI nr
Match: gi|952954722|gb|ALO22081.1| (RpoC2 (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 236.5 bits (602), Expect = 4.2e-59
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 

Query: 1   MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVEL 60
           MGPRCIGIRNQDIGIGLINRFITFQTQPI    PFTCRSTSWICRLCYGRSPTHGDLVEL
Sbjct: 259 MGPRCIGIRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVEL 318

Query: 61  GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 114
           GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT
Sbjct: 319 GEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPT 374

The following BLAST results are available for this feature:
BLAST of CmaCh01G009070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC2_CUCSA3.4e-6195.69DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus GN=rpoC2 PE=3 SV=1[more]
RPOC2_EUCGG1.4e-5992.24DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu... [more]
RPOC2_TOBAC9.3e-5991.38DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV... [more]
RPOC2_NICTO9.3e-5991.38DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2... [more]
RPOC2_NICSY9.3e-5991.38DNA-directed RNA polymerase subunit beta'' OS=Nicotiana sylvestris GN=rpoC2 PE=3... [more]
BLAST of CmaCh01G009070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IH42_CUCPE2.9e-5996.55DNA-directed RNA polymerase subunit OS=Cucurbita pepo var. ozarkana GN=rpoC2 PE=... [more]
A0A0S2IFH3_9ROSI2.9e-5996.55DNA-directed RNA polymerase subunit OS=Cucurbita foetidissima GN=rpoC2 PE=3 SV=1[more]
A0A0S2IFP5_CUCMO2.9e-5996.55DNA-directed RNA polymerase subunit OS=Cucurbita moschata GN=rpoC2 PE=3 SV=1[more]
A0A0S2IG43_9ROSI2.9e-5996.55DNA-directed RNA polymerase subunit OS=Cucurbita okeechobeensis subsp. martinezi... [more]
A0A0S2IDT9_9ROSI2.9e-5996.55DNA-directed RNA polymerase subunit OS=Cucurbita argyrosperma GN=rpoC2 PE=3 SV=1[more]
BLAST of CmaCh01G009070 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00170.12.7e-5686.21ATCG00170.1 DNA-directed RNA polymerase family protein[more]
AT5G60040.22.0e-0641.89 nuclear RNA polymerase C1[more]
BLAST of CmaCh01G009070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954904|gb|ALO22260.1|4.2e-5996.55RpoC2 (plastid) [Cucurbita lundelliana][more]
gi|952954854|gb|ALO22211.1|4.2e-5996.55RpoC2 (plastid) [Cucurbita foetidissima][more]
gi|952954943|gb|ALO22298.1|4.2e-5996.55RpoC2 (plastid) [Cucurbita andreana][more]
gi|952954768|gb|ALO22126.1|4.2e-5996.55RpoC2 (plastid) [Cucurbita ficifolia][more]
gi|952954722|gb|ALO22081.1|4.2e-5996.55RpoC2 (plastid) [Cucurbita ecuadorensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G009070.1CmaCh01G009070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 49..120
score: 8.4
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..129
score: 5.8
NoneNo IPR availablePANTHERPTHR19376:SF38DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 1..129
score: 5.8
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 16..117
score: 6.18

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G009070Cucurbita moschata (Rifu)cmacmoB441
CmaCh01G009070Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G009070Cucurbita moschata (Rifu)cmacmoB471
CmaCh01G009070Wild cucumber (PI 183967)cmacpiB488
CmaCh01G009070Cucumber (Chinese Long) v2cmacuB485
CmaCh01G009070Melon (DHL92) v3.5.1cmameB410
CmaCh01G009070Watermelon (Charleston Gray)cmawcgB381
CmaCh01G009070Watermelon (97103) v1cmawmB411
CmaCh01G009070Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G009070Bottle gourd (USVL1VR-Ls)cmalsiB411
CmaCh01G009070Bottle gourd (USVL1VR-Ls)cmalsiB453
CmaCh01G009070Cucumber (Gy14) v2cgybcmaB774
CmaCh01G009070Cucumber (Chinese Long) v3cmacucB0580
CmaCh01G009070Watermelon (97103) v2cmawmbB516
CmaCh01G009070Cucurbita maxima (Rimu)cmacmaB056