CmaCh01G008900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G008900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLight-harvesting complex I chlorophyll A/B-binding protein
LocationCma_Chr01 : 5137054 .. 5138776 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCGCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCCTCTCCGGCGCCTCCGCCAGGTCAGCGTCCTCTGCTTCTAGCCCGGTGACCTCCAAGATCGTGGCGATTTTCGGGAAGAAGCCAGCCGCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCCGTCAATGACGAGCTCGCCAAGTGGTATGGTAAGTCCAACCGTTAAGAACGAGAAACAGAGGTGGGATCAAAAGTGTTTCGATCTCTATCACTTTTCTTCTGTTCTTCCTCTTTCTATTGCACTAATATCAGGTTAAAAATGAGAAACAGTATGAAAATTGTTGCTCAATTGTGTTCTATTTATTTTCGTTCATTAATTTAATTTACAAAATTCAGTCTTATTTCTAGTCATAAAGCTTAGAAATAGTGATAATTCACACGCTTATACATATTTTCTTGAGCTGATCTTGAGTGTATTCATCGGCATTAATTAGGCCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGAGTATGACTTAATTTCTTATCCTCTTTCTTATAATTTTCTTAAGCTTCGTTTGATAATCATTTAATTGGGTTGATTACAGCTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAGTAAATAAAAATTCTGAATTAATTTAGAATTGAGTTGAAGTAGTAAAGAAGAGCTTAGTGGGTTTGTTTATTGGCAGATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTCTGGTTCAAGGTCCACTTCTCTGCACTAATAATCTCTGTTTGGAAGTGCTTTTAAGCTAAAACTGCTCAATTCTGATCCAATATGGGATGTTGCAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGTTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGGTACGCTTTGAATGATGAAAAATTATGAAAAGGGTATGAAGTATTTGAGCTGAATGATGGTTTTGTGTAGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGAACACTGCAAGTTTGAGTATTGAATGGAAGCGTTGAATGTGTTTGTAAATTTGTATTGAGACTATTTGTAGCCTCTGACCACTCACTCTCAGTGCATTTAAAAGAGCTATGAACAAGAGCTTGATATCAAAATTTCTGTCAAATTGTGTGTGTAAACTGTGGGGTGGGTTGGTGCATAATTTCTCTATTTTCTACGCAATTCAACCTTAATATATATATTTAAGTAGCCTATGTGCTTTCATGATTCTTAA

mRNA sequence

ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCGCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCCTCTCCGGCGCCTCCGCCAGGTCAGCGTCCTCTGCTTCTAGCCCGGTGACCTCCAAGATCGTGGCGATTTTCGGGAAGAAGCCAGCCGCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCCGTCAATGACGAGCTCGCCAAGTGGTATGGCCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGTTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGAACACTGCAAGTTTGAGTATTGAATGGAAGCGTTGAATGTGTTTGTAAATTTGTATTGAGACTATTTGTAGCCTCTGACCACTCACTCTCAGTGCATTTAAAAGAGCTATGAACAAGAGCTTGATATCAAAATTTCTGTCAAATTGTGTGTGTAAACTGTGGGGTGGGTTGGTGCATAATTTCTCTATTTTCTACGCAATTCAACCTTAATATATATATTTAAGTAGCCTATGTGCTTTCATGATTCTTAA

Coding sequence (CDS)

ATGGCCTCCTTGGCAGCCTCCACCGCCGCCGCCTCGCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCCTCTCCGGCGCCTCCGCCAGGTCAGCGTCCTCTGCTTCTAGCCCGGTGACCTCCAAGATCGTGGCGATTTTCGGGAAGAAGCCAGCCGCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCCGTCAATGACGAGCTCGCCAAGTGGTATGGCCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAACCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGTTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA

Protein sequence

MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Homology
[Close]
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match: CB5_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 3.4e-131
Identity = 233/281 (82.92%), Postives = 247/281 (87.90%), Query Frame = 1 

Query: 11  ASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDEL 70
           ASLGVSEML  PL+    S  SA  ASSP T K VA+F KK  A  K K  AVS  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHAR 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHAR
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 121

Query: 131 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEV 190
           WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AVVAEV
Sbjct: 122 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEV 181

Query: 191 VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGF 250
           VL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGF
Sbjct: 182 VLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 241

Query: 251 YFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           + QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AER PTL
Sbjct: 242 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.5e-57
Identity = 118/239 (49.37%), Postives = 151/239 (63.18%), Query Frame = 1 

Query: 44  IVAIFGKKPAAAPKPKPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGD 103
           ++A  G K     + +   ++ V     ++YGPDR  FL  G    ++ PEYL GE PGD
Sbjct: 4   LIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGD 63

Query: 104 YGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 163
           YG+D  GLS  P+ F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA
Sbjct: 64  YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 123

Query: 164 LLLDGNTLNYFGNNIPIN---LIVAVVAEVVLVGGAEYYRIING----LNFEDKLHPGGP 223
            +     LNY GN   I+   +I  +  +VVL+G AE YR   G    L+  D L+PGGP
Sbjct: 124 QIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP 183

Query: 224 FDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFAN 276
           FDPLGLADDPD  A LKVKEIKNGRLAMF+ LGF+ QA VTG+GPV+NL  HL+DP  N
Sbjct: 184 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240

[Close]
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-56
Identity = 134/256 (52.34%), Postives = 163/256 (63.67%), Query Frame = 1 

Query: 26  SGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDELAKWYGPDRRIFLPDG 85
           S   AR+A S SS +  +   I  +K AA PKP  S+ SP       WYG DR ++L  G
Sbjct: 10  SPVMARAAPSTSSALFGE-ARITMRKTAAKPKPAASSGSP-------WYGADRVLYL--G 69

Query: 86  LLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAF 145
            L   E P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWAMLGA G + PE  
Sbjct: 70  PLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 129

Query: 146 NKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL--IVAVVA-EVVLVGGAEYYRII 205
            + G   G EAVWFK G+ +     L+Y GN   I+   I+A+ A +VVL+G  E YRI 
Sbjct: 130 ARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA 189

Query: 206 NGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEG 265
            G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M GF+ QA VTG+G
Sbjct: 190 GGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 249

Query: 266 PVENLAKHLSDPFANN 277
           P+ENLA HL+DP  NN
Sbjct: 250 PLENLADHLADPVNNN 253

[Close]
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 6.7e-55
Identity = 132/260 (50.77%), Postives = 161/260 (61.92%), Query Frame = 1 

Query: 28  ASARSASSASSPVTSKIVAIFG------KKPAAAPKPKPSAVSPVNDELAKWYGPDRRIF 87
           A+A  A S+ +        +FG      +K AA PKP  S  SP       WYG DR ++
Sbjct: 2   AAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASG-SP-------WYGADRVLY 61

Query: 88  LPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFII 147
           L  G L   E P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWAMLGA G + 
Sbjct: 62  L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVF 121

Query: 148 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL--IVAVVA-EVVLVGGAEY 207
           PE   + G   G EAVWFK G+ +     L+Y GN   I+   I+A+ A +VVL+G  E 
Sbjct: 122 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEG 181

Query: 208 YRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYV 267
           YRI  G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M GF+ QA V
Sbjct: 182 YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 241

Query: 268 TGEGPVENLAKHLSDPFANN 277
           TG+GP+ENLA HL+DP  NN
Sbjct: 242 TGKGPLENLADHLADPVNNN 249

[Close]
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.8e-55
Identity = 113/209 (54.07%), Postives = 140/209 (66.99%), Query Frame = 1 

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYGPDR ++L        E P YL GE PGDYG+D  GLS  PE+F+K +  E+IH RWA
Sbjct: 58  WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWA 117

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL--IVAVVA-E 192
           MLGA G + PE   + G   G EAVWFK GA +     L+Y GN   ++   I+A+ A +
Sbjct: 118 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 177

Query: 193 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 252
           V+L+G  E YRI  G   E  D ++PGG FDPLGLA+DP+  A LKVKEIKNGRLAMF+M
Sbjct: 178 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 237

Query: 253 LGFYFQAYVTGEGPVENLAKHLSDPFANN 277
            GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 238 FGFFVQAIVTGKGPIENLADHLADPVNNN 262

[Close]
BLAST of CmaCh01G008900 vs. TrEMBL
Match: A0A0A0KXR5_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G646700 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 2.4e-152
Identity = 273/291 (93.81%), Postives = 278/291 (95.53%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS    S+RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

[Close]
BLAST of CmaCh01G008900 vs. TrEMBL
Match: A0A0R0FSY2_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_16G205200 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 8.6e-142
Identity = 256/291 (87.97%), Postives = 271/291 (93.13%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLG+SEML NP++LSGA+ R A SASSP + K VA+F KK AA PK K 
Sbjct: 1   MASLAASTAAASLGMSEMLGNPINLSGAT-RPAPSASSPASFKTVALFSKKKAAPPK-KA 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +A +P NDELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  AAAAPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFG  IPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AE+VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNG
Sbjct: 181 NLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISG+AER PTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289

[Close]
BLAST of CmaCh01G008900 vs. TrEMBL
Match: A0A0B2QXQ5_GLYSO (Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_014031 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 8.6e-142
Identity = 256/291 (87.97%), Postives = 271/291 (93.13%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLG+SEML NP++LSGA+ R A SASSP + K VA+F KK AA PK K 
Sbjct: 1   MASLAASTAAASLGMSEMLGNPINLSGAT-RPAPSASSPASFKTVALFSKKKAAPPK-KA 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +A +P NDELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  AAAAPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFG  IPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AE+VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNG
Sbjct: 181 NLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISG+AER PTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289

[Close]
BLAST of CmaCh01G008900 vs. TrEMBL
Match: C6TKE6_SOYBN (Chlorophyll a-b binding protein, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 7.3e-141
Identity = 255/291 (87.63%), Postives = 270/291 (92.78%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLG+SEML NP++LSGA+ R A SASSP + K VA+F KK AA PK K 
Sbjct: 1   MASLAASTAAASLGMSEMLGNPINLSGAT-RPAPSASSPASFKTVALFSKKKAAPPK-KA 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +A +P NDELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDP GLSKKPEDFSK
Sbjct: 61  AAAAPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFG  IPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AE+VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKNG
Sbjct: 181 NLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISG+AER PTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289

[Close]
BLAST of CmaCh01G008900 vs. TrEMBL
Match: A0A151SIQ2_CAJCA (Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan GN=KK1_000921 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 9.5e-141
Identity = 254/292 (86.99%), Postives = 270/292 (92.47%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLG+SEML NP++LSGA+ R A S SSP + K VA+F KK A  P PK 
Sbjct: 1   MASLAASTAAASLGMSEMLGNPINLSGAT-RPAPSPSSPASFKTVALFSKKKAPPPPPKK 60

Query: 61  S-AVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFS 120
           + AVSP N+ELAKWYGPDRRIFLPDGLLDRSEIPEYL GEVPGDYGYDPFGLSKKPEDF+
Sbjct: 61  AVAVSPANEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFA 120

Query: 121 KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP 180
           KYQAFELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFG  IP
Sbjct: 121 KYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIP 180

Query: 181 INLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKN 240
           INLIVAV+AE+VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLA+DPDQAA+LKVKEIKN
Sbjct: 181 INLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKN 240

Query: 241 GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AER PTL
Sbjct: 241 GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291

[Close]
BLAST of CmaCh01G008900 vs. TAIR10
Match: AT4G10340.1 (AT4G10340.1 light harvesting complex of photosystem II 5)

HSP 1 Score: 469.2 bits (1206), Expect = 1.9e-132
Identity = 233/281 (82.92%), Postives = 247/281 (87.90%), Query Frame = 1 

Query: 11  ASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKPSAVSPVNDEL 70
           ASLGVSEML  PL+    S  SA  ASSP T K VA+F KK  A  K K  AVS  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHAR 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHAR
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 121

Query: 131 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEV 190
           WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AVVAEV
Sbjct: 122 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEV 181

Query: 191 VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGF 250
           VL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGF
Sbjct: 182 VLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 241

Query: 251 YFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           + QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AER PTL
Sbjct: 242 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]
BLAST of CmaCh01G008900 vs. TAIR10
Match: AT2G05100.1 (AT2G05100.1 photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 206.5 bits (524), Expect = 2.3e-53
Identity = 112/209 (53.59%), Postives = 136/209 (65.07%), Query Frame = 1 

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYGPDR  +L          P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWA
Sbjct: 49  WYGPDRPKYLGPF---SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVVA-E 192
           MLGA G   PE  +K G   G EAVWFK G+ +     L+Y GN   I    I+A+ A +
Sbjct: 109 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 168

Query: 193 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 252
           VVL+G  E YRI  G   E  D L+PGG FDPL LA+DP+  + LKVKE+KNGRLAMF+M
Sbjct: 169 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 228

Query: 253 LGFYFQAYVTGEGPVENLAKHLSDPFANN 277
            GF+ QA VTG+GP+ENL  HL+DP ANN
Sbjct: 229 FGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]
BLAST of CmaCh01G008900 vs. TAIR10
Match: AT3G27690.1 (AT3G27690.1 photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-53
Identity = 111/209 (53.11%), Postives = 136/209 (65.07%), Query Frame = 1 

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYGPDR  +L          P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWA
Sbjct: 50  WYGPDRPKYLGPF---SENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 109

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVVA-E 192
           MLGA G   PE  +K G   G EAVWFK G+ +     L+Y GN   I    I+A+ A +
Sbjct: 110 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 169

Query: 193 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 252
           VVL+G  E YRI  G   E  D L+PGG FDPL LA+DP+  + LKVKE+KNGRLAMF+M
Sbjct: 170 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 229

Query: 253 LGFYFQAYVTGEGPVENLAKHLSDPFANN 277
            GF+ QA VTG+GP+ENL  H++DP ANN
Sbjct: 230 FGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]
BLAST of CmaCh01G008900 vs. TAIR10
Match: AT1G29930.1 (AT1G29930.1 chlorophyll A/B binding protein 1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 123/268 (45.90%), Postives = 162/268 (60.45%), Query Frame = 1 

Query: 18  MLRNPLSLSGASARSASSASSPVTSKIVA---IFGKKPAAAPKPKPSAVSPVNDELAKWY 77
           M  + ++LS  +    +   SP  S+++    +  +K  A  KPK  + SP       WY
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVA--KPKGPSGSP-------WY 60

Query: 78  GPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAML 137
           G DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWAML
Sbjct: 61  GSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 120

Query: 138 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL--IVAVVA-EVV 197
           GA G + PE   + G   G EAVWFK G+ +     L+Y GN   ++   I+A+ A +V+
Sbjct: 121 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVI 180

Query: 198 LVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAML 257
           L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M 
Sbjct: 181 LMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMF 240

Query: 258 GFYFQAYVTGEGPVENLAKHLSDPFANN 277
           GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 GFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]
BLAST of CmaCh01G008900 vs. TAIR10
Match: AT1G29910.1 (AT1G29910.1 chlorophyll A/B binding protein 3)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-52
Identity = 123/268 (45.90%), Postives = 162/268 (60.45%), Query Frame = 1 

Query: 18  MLRNPLSLSGASARSASSASSPVTSKIVA---IFGKKPAAAPKPKPSAVSPVNDELAKWY 77
           M  + ++LS  +    +   SP  S+++    +  +K  A  KPK  + SP       WY
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVA--KPKGPSGSP-------WY 60

Query: 78  GPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAML 137
           G DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWAML
Sbjct: 61  GSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 120

Query: 138 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL--IVAVVA-EVV 197
           GA G + PE   + G   G EAVWFK G+ +     L+Y GN   ++   I+A+ A +V+
Sbjct: 121 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVI 180

Query: 198 LVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAML 257
           L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M 
Sbjct: 181 LMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMF 240

Query: 258 GFYFQAYVTGEGPVENLAKHLSDPFANN 277
           GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 GFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]
BLAST of CmaCh01G008900 vs. NCBI nr
Match: gi|449447521|ref|XP_004141516.1| (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 546.2 bits (1406), Expect = 3.5e-152
Identity = 273/291 (93.81%), Postives = 278/291 (95.53%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS    S+RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

[Close]
BLAST of CmaCh01G008900 vs. NCBI nr
Match: gi|659119133|ref|XP_008459494.1| (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Cucumis melo])

HSP 1 Score: 543.9 bits (1400), Expect = 1.7e-151
Identity = 273/291 (93.81%), Postives = 276/291 (94.85%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS S  SA    SASSP T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSA--PPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +  SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  APASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289

[Close]
BLAST of CmaCh01G008900 vs. NCBI nr
Match: gi|778707685|ref|XP_011656042.1| (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 526.9 bits (1356), Expect = 2.2e-146
Identity = 272/325 (83.69%), Postives = 278/325 (85.54%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60
           MASLAASTAAASLGVSEMLRNPLS S   +RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFS---SRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGD----------------- 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPG+                 
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGEYGSIFFYPPHHCSSMFR 120

Query: 121 -----------------YGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFN 180
                            YGYDPFGLSKKPEDF+KYQAFELIHARWAMLGAAGFIIPEAFN
Sbjct: 121 LQWKLNSNTLFYLVCYSYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFN 180

Query: 181 KFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVVAEVVLVGGAEYYRIINGLN 240
           KFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAV+AEVVLVGGAEYYRIINGLN
Sbjct: 181 KFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLN 240

Query: 241 FEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLA 292
           FEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLA
Sbjct: 241 FEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLA 300

[Close]
BLAST of CmaCh01G008900 vs. NCBI nr
Match: gi|1009143917|ref|XP_015889517.1| (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 520.8 bits (1340), Expect = 1.6e-144
Identity = 259/292 (88.70%), Postives = 272/292 (93.15%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAP-KPK 60
           MASLAASTAAASLGVSEML NPL+ SG +  +A +ASSPVT K VA+F KK AA P K K
Sbjct: 1   MASLAASTAAASLGVSEMLGNPLNFSGVARSAAPTASSPVTFKTVALFSKKKAAPPAKAK 60

Query: 61  PSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFS 120
           P+A SPV+DELAKWYGPDRRIFLPDGLLDRSEIPEYL GEVPGDYGYDPFGLSKKPEDF+
Sbjct: 61  PAAASPVDDELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFA 120

Query: 121 KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIP 180
           KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIP
Sbjct: 121 KYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 180

Query: 181 INLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKN 240
           INL+VAV+AEV+LVGGAEYYRI NGL+FEDKLHPGGPFDPLGLA DPDQAAILKVKEIKN
Sbjct: 181 INLVVAVIAEVILVGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKN 240

Query: 241 GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVI+GNAER PTL
Sbjct: 241 GRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL 292

[Close]
BLAST of CmaCh01G008900 vs. NCBI nr
Match: gi|719988400|ref|XP_010252321.1| (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 517.7 bits (1332), Expect = 1.3e-143
Identity = 257/293 (87.71%), Postives = 273/293 (93.17%), Query Frame = 1 

Query: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAP--KP 60
           MASLAASTA+ASLGV EML NPL+ +GA AR A SASSP T K VA+F +K AA P  KP
Sbjct: 1   MASLAASTASASLGVKEMLGNPLNFTGA-ARPAPSASSPTTFKTVALFSRKKAAPPPPKP 60

Query: 61  KPSAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF 120
           KP+A +P+NDELAKWYGPDRRIFLPDGLLDRSEIPEYL GEVPGDYGYDPFGLSKKPEDF
Sbjct: 61  KPAAAAPINDELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 120

Query: 121 SKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNI 180
           +KYQA+ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NI
Sbjct: 121 AKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180

Query: 181 PINLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIK 240
           PINL+VAV+AEV+LVGGAEYYRIINGLN EDKLHPGGPFDPLGLA+DPDQAAILKVKEIK
Sbjct: 181 PINLVVAVIAEVILVGGAEYYRIINGLNLEDKLHPGGPFDPLGLAEDPDQAAILKVKEIK 240

Query: 241 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           NGRLAMFAMLGFYFQAYVTG+GPVENLA HLSDPF NNLLTVISG+AERVPTL
Sbjct: 241 NGRLAMFAMLGFYFQAYVTGQGPVENLAAHLSDPFGNNLLTVISGSAERVPTL 292

The following BLAST results are available for this feature:
BLAST of CmaCh01G008900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CB5_ARATH3.4e-13182.92Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=L... [more]
CB2_DUNTE2.5e-5749.37Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella ter... [more]
CB21_ORYSJ1.2e-5652.34Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica... [more]
CB22_ORYSJ6.7e-5550.77Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica... [more]
CB2B_PINSY8.8e-5554.07Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvest... [more]
BLAST of CmaCh01G008900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXR5_CUCSA2.4e-15293.81Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G64670... [more]
A0A0R0FSY2_SOYBN8.6e-14287.97Chlorophyll a-b binding protein, chloroplastic OS=Glycine max GN=GLYMA_16G205200... [more]
A0A0B2QXQ5_GLYSO8.6e-14287.97Chlorophyll a-b binding protein, chloroplastic OS=Glycine soja GN=glysoja_014031... [more]
C6TKE6_SOYBN7.3e-14187.63Chlorophyll a-b binding protein, chloroplastic OS=Glycine max PE=2 SV=1[more]
A0A151SIQ2_CAJCA9.5e-14186.99Chlorophyll a-b binding protein, chloroplastic OS=Cajanus cajan GN=KK1_000921 PE... [more]
BLAST of CmaCh01G008900 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10340.11.9e-13282.92 light harvesting complex of photosystem II 5[more]
AT2G05100.12.3e-5353.59 photosystem II light harvesting complex gene 2.1[more]
AT3G27690.13.9e-5353.11 photosystem II light harvesting complex gene 2.3[more]
AT1G29930.11.5e-5245.90 chlorophyll A/B binding protein 1[more]
AT1G29910.11.9e-5245.90 chlorophyll A/B binding protein 3[more]
BLAST of CmaCh01G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447521|ref|XP_004141516.1|3.5e-15293.81PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic isoform X2 [Cucum... [more]
gi|659119133|ref|XP_008459494.1|1.7e-15193.81PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Cucumis melo][more]
gi|778707685|ref|XP_011656042.1|2.2e-14683.69PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic isoform X1 [Cucum... [more]
gi|1009143917|ref|XP_015889517.1|1.6e-14488.70PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Ziziphus jujuba][more]
gi|719988400|ref|XP_010252321.1|1.3e-14387.71PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Nelumbo nucifera... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0010155 regulation of proton transport
biological_process GO:0009644 response to high light intensity
biological_process GO:0009744 response to sucrose
biological_process GO:0006364 rRNA processing
biological_process GO:0010196 nonphotochemical quenching
cellular_component GO:0016020 membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009517 PSII associated light-harvesting complex II
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009783 photosystem II antenna complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G008900.1CmaCh01G008900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 5..291
score: 6.6E
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 93..254
score: 3.5
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 89..279
score: 1.5
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 73..281
score: 1.01
NoneNo IPR availablePANTHERPTHR21649:SF16CHLOROPHYLL A-B BINDING PROTEIN CP26, CHLOROPLASTICcoord: 5..291
score: 6.6E