CmaCh01G004470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G004470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Hydroxyproline-rich glycoprotein family protein
Location	Cma_Chr01 : 2242306 .. 2243374 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATAACTCTCACCTAATCCAATTCCTCATAGCTCAAATTCCCACAGAATCTTCACCTTTCTTCTTCATTCCCTTTTGAATATCTGTAATCCCTCGAAGCTCATCGGTTCCAATGGAGATTGCGACTGAACCAGCCATTCCCACAACCCCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCAACCCCGGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGCCCAAAACCAAATGGAAAGTTCAAAATGTGAGTGTAAAACGCCAACCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTAAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGTTAAACAAAGAGGGGGCATTGCATTTCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCCAAAGCATTCAAATATCACGAAAGGTAATGGCTTAGAAGTGTGAGTTTTTGGTGTCCGATGTGAAAAGTGGTGAATTTGAAAGTGGTGATTCGCTGTTGTAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGGTTAGCTGTCTTCTTTCTCTAACTAACTCTTTGTTATAATTATCATTCTTTTAGATTAACAAGTTTGAAGGGTTTTGTGTTCTTGTTCTGTTGATGCAGATGCATGAGCTGAGAATTTCGGAGATGAGTCTTCATAGCTGAATAAATGGGTTCTTATGGGCCTCCAAAATTTCATGAGTTCTTCTCTTTTCATTTCCATTGCTTCTTGTATCACTTCTTTATGAATATATAGTAGAATTTAATTCATTGTTCTAATAATATTGTGTTAAATCATCCCGGACAAAGAAGACGAGCCATTCAACACAAATTTGATACCATTGAATCCTGTTCATTAATGAACTCGTGTACTCACAAACCCAAAAACAGAAATTTAACAAAAATATATAAAGATTTAT

mRNA sequence

TAAATAACTCTCACCTAATCCAATTCCTCATAGCTCAAATTCCCACAGAATCTTCACCTTTCTTCTTCATTCCCTTTTGAATATCTGTAATCCCTCGAAGCTCATCGGTTCCAATGGAGATTGCGACTGAACCAGCCATTCCCACAACCCCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCAACCCCGGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGCCCAAAACCAAATGGAAAGTTCAAAATGTGAGTGTAAAACGCCAACCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTAAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGTTAAACAAAGAGGGGGCATTGCATTTCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCCAAAGCATTCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGCTGAGAATTTCGGAGATGAGTCTTCATAGCTGAATAAATGGGTTCTTATGGGCCTCCAAAATTTCATGAGTTCTTCTCTTTTCATTTCCATTGCTTCTTGTATCACTTCTTTATGAATATATAGTAGAATTTAATTCATTGTTCTAATAATATTGTGTTAAATCATCCCGGACAAAGAAGACGAGCCATTCAACACAAATTTGATACCATTGAATCCTGTTCATTAATGAACTCGTGTACTCACAAACCCAAAAACAGAAATTTAACAAAAATATATAAAGATTTAT

Coding sequence (CDS)

ATGGAGATTGCGACTGAACCAGCCATTCCCACAACCCCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCAACCCCGGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGCCCAAAACCAAATGGAAAGTTCAAAATGTGAGTGTAAAACGCCAACCCCAGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTAAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGTTAAACAAAGAGGGGGCATTGCATTTCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCCAAAGCATTCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGCTGAGAATTTCGGAGATGAGTCTTCATAGCTGA

Protein sequence

MEIATEPAIPTTPTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

Homology

[Close]

BLAST of CmaCh01G004470 vs. TrEMBL
Match: A0A0A0L0M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G101270 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 97/188 (51.60%), Postives = 119/188 (63.30%), Query Frame = 1


Query: 1   MEIATEPAIPTTPTQSKPVDS------EQQSETSGAGETTATPELETPINGTPD-REKKG 60
           ME+ T+P +  + ++     +      +++ + S +   T TP  +T         EK  
Sbjct: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 61  KAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEVK------ 120
           K          +C+TPTP+EKTEEK+RILVP NG  MDR KVPKSP  V  E K      
Sbjct: 61  KVPKSPRELIVQCETPTPNEKTEEKERILVPKNG-SMDRSKVPKSPAKVNLECKTPIQRV 120

Query: 121 QRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELR 175
           + GGI  PKNGTPNRLK+P AFKY ERY SPTD+M+SPI+KGLLARTRKGAVPSKMHELR
Sbjct: 121 KMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELR 180

[Close]

BLAST of CmaCh01G004470 vs. TrEMBL
Match: B9SNP6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025190 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 49  REKKGKAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQR 108
           +E   K   Q E++  ECKTP  D+K + K                   S N +G+++  
Sbjct: 5   QETPKKEPMQSEANILECKTPPQDQKMDSK-------------------SLNSSGDLR-- 64

Query: 109 GGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGA--VPSKMHELR 168
                 K+ TP+RLKVPKAFKY ERY SPTDLM+SPITKGLLAR RKGA  +P  M++ +
Sbjct: 65  ------KSSTPDRLKVPKAFKYPERYRSPTDLMVSPITKGLLARNRKGAALLPPSMNQAK 102

Query: 169 ISEMS 172
           + +++
Sbjct: 125 VPDIA 102

[Close]

BLAST of CmaCh01G004470 vs. TrEMBL
Match: M5X7A4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016098mg PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 42/61 (68.85%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 104 EVKQRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAV---PS 162
           E  Q  G    K  TP+RLKVPKAFKY ERYTSPTDLMMSP+TKGLLAR RKG     PS
Sbjct: 38  ENSQNSGNDLRKPTTPDRLKVPKAFKYPERYTSPTDLMMSPVTKGLLARNRKGGALLPPS 97

[Close]

BLAST of CmaCh01G004470 vs. TrEMBL
Match: A0A061EGD7_THECC (Hydroxyproline-rich glycoprotein family protein OS=Theobroma cacao GN=TCM_018767 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 43/87 (49.43%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 94  KVPKSPNVAGEVKQRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLART 153
           K P       +  Q       K  TP+RLKVPKAFKY ERY SPTD MMSP+TKGLLAR 
Sbjct: 19  KAPPQNQQIDQNSQDSSNDLKKTCTPDRLKVPKAFKYPERYRSPTDSMMSPVTKGLLARN 78

Query: 154 RKGAV--------PSKMHELRISEMSL 173
           RKG           +K+HELR+ ++ L
Sbjct: 79  RKGGASLLPPSINQTKIHELRVQDVGL 105

[Close]

BLAST of CmaCh01G004470 vs. TrEMBL
Match: A0A0D2SGC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G082700 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.5e-12
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 86  NGLMMDRLKVPKSPNVAGEVKQRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPI 145
           NG ++++    +   +   +++  G    K  TP+RLKVPKAFK+ ERY SPTD MMSP+
Sbjct: 18  NGGILEKTPPLQDQKIDENIQEDSGKDLKKTCTPDRLKVPKAFKFPERYRSPTDSMMSPV 77

Query: 146 TKGLLARTRKGA---VP-----SKMHELRISEMSL 173
           TKGLLAR RK     +P     +K+HELR+ ++ L
Sbjct: 78  TKGLLARNRKAGGSLLPPSINQTKIHELRVQDVGL 112

[Close]

BLAST of CmaCh01G004470 vs. TAIR10
Match: AT3G02120.1 (AT3G02120.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 48/117 (41.03%), Postives = 61/117 (52.14%), Query Frame = 1


Query: 59  MESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQRGGIAFP--KN 118
           ME  +   +TP    KT+   R +   N         P+S         R     P  K 
Sbjct: 1   MELQQSNLETPL---KTQHDHRKITTSNPESSPPRPFPESSRKHDSPPPRASTNEPMKKI 60

Query: 119 GTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGA---VPSKMHELRISEM 171
           GTP RL+VP AFKY ERY SPTD MMSP+TKGLLARTRK +   +P   ++ +I E+
Sbjct: 61  GTPERLRVPIAFKYPERYRSPTDAMMSPVTKGLLARTRKSSGSLIPPSFNQTKIQEL 114

[Close]

BLAST of CmaCh01G004470 vs. NCBI nr
Match: gi|659125937|ref|XP_008462927.1| (PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 98/181 (54.14%), Postives = 114/181 (62.98%), Query Frame = 1


Query: 1   MEIATEPAIPTTPTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKAQNQME 60
           +EI+      TTP +     +E++      G+ +  P+  T +N                
Sbjct: 31  LEISNSECKTTTPDEK----TEEKQRVFVPGKESKVPKSPTKLN---------------- 90

Query: 61  SSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAG-EVK---QR---GGIAF 120
               ECKTPTPDEKT++K+RILVP NG  MDR KVPKSP     E K   QR   GGI  
Sbjct: 91  ---LECKTPTPDEKTDKKERILVPKNG-SMDRSKVPKSPGKVNLECKTPTQRVKIGGIEL 150

Query: 121 PKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLH 175
           PKNGTPNRLK+P AFKY ERY SPTDLM+SPI+KGLLARTRKGAVPSKMHELR SEMSL 
Sbjct: 151 PKNGTPNRLKLPIAFKYPERYKSPTDLMISPISKGLLARTRKGAVPSKMHELRNSEMSLL 187

[Close]

BLAST of CmaCh01G004470 vs. NCBI nr
Match: gi|778691860|ref|XP_011653365.1| (PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 97/188 (51.60%), Postives = 119/188 (63.30%), Query Frame = 1


Query: 1   MEIATEPAIPTTPTQSKPVDS------EQQSETSGAGETTATPELETPINGTPD-REKKG 60
           ME+ T+P +  + ++     +      +++ + S +   T TP  +T         EK  
Sbjct: 1   MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 61  KAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEVK------ 120
           K          +C+TPTP+EKTEEK+RILVP NG  MDR KVPKSP  V  E K      
Sbjct: 61  KVPKSPRELIVQCETPTPNEKTEEKERILVPKNG-SMDRSKVPKSPAKVNLECKTPIQRV 120

Query: 121 QRGGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELR 175
           + GGI  PKNGTPNRLK+P AFKY ERY SPTD+M+SPI+KGLLARTRKGAVPSKMHELR
Sbjct: 121 KMGGIELPKNGTPNRLKLPVAFKYPERYKSPTDMMISPISKGLLARTRKGAVPSKMHELR 180

[Close]

BLAST of CmaCh01G004470 vs. NCBI nr
Match: gi|255573378|ref|XP_002527615.1| (PREDICTED: uncharacterized protein LOC8289594 [Ricinus communis])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 49  REKKGKAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQR 108
           +E   K   Q E++  ECKTP  D+K + K                   S N +G+++  
Sbjct: 5   QETPKKEPMQSEANILECKTPPQDQKMDSK-------------------SLNSSGDLR-- 64

Query: 109 GGIAFPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGA--VPSKMHELR 168
                 K+ TP+RLKVPKAFKY ERY SPTDLM+SPITKGLLAR RKGA  +P  M++ +
Sbjct: 65  ------KSSTPDRLKVPKAFKYPERYRSPTDLMVSPITKGLLARNRKGAALLPPSMNQAK 102

Query: 169 ISEMS 172
           + +++
Sbjct: 125 VPDIA 102

[Close]

BLAST of CmaCh01G004470 vs. NCBI nr
Match: gi|747101250|ref|XP_011098748.1| (PREDICTED: uncharacterized protein LOC105177327 [Sesamum indicum])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 115 KNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAV--------PSKMHELR 172
           KNGTP+RLKVPKAFKY ERYTSPTD MMSP T+G+LAR+RKG+         P K+  L+
Sbjct: 43  KNGTPDRLKVPKAFKYRERYTSPTDQMMSPATRGILARSRKGSKLFPPSANHPPKIQALQ 102

[Close]

BLAST of CmaCh01G004470 vs. NCBI nr
Match: gi|1009125794|ref|XP_015879802.1| (PREDICTED: uncharacterized protein LOC107415903 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1


Query: 54  KAQNQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEVKQRGGIAF 113
           K+  Q E+   +CKTPTP  +T+E  +  +                          G   
Sbjct: 10  KSPIQSENPVSDCKTPTPVRQTDENSQNCL------------------------NSGNDL 69

Query: 114 PKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGA--VPSKMHELRISEMS 173
            K  TP+RLKVPKAFKY ERYTSPTDLM+SP+TKG+LAR+RKG   +P    +++I +  
Sbjct: 70  RKTITPDRLKVPKAFKYPERYTSPTDLMVSPVTKGILARSRKGGALLPPSKTQIKIQDFR 106

The following BLAST results are available for this feature:

BLAST of CmaCh01G004470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G004470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0M1_CUCSA	1.5e-32	51.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G101270 PE=4 SV=1	[more]
B9SNP6_RICCO	1.2e-13	42.40	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025190 PE=4 SV=1	[more]
M5X7A4_PRUPE	6.5e-12	68.85	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016098mg PE=4 SV=1	[more]
A0A061EGD7_THECC	6.5e-12	49.43	Hydroxyproline-rich glycoprotein family protein OS=Theobroma cacao GN=TCM_018767...	[more]
A0A0D2SGC4_GOSRA	8.5e-12	44.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G082700 PE=4 SV=1	[more]

BLAST of CmaCh01G004470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02120.1	2.4e-13	41.03	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CmaCh01G004470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125937\|ref\|XP_008462927.1\|	1.5e-33	54.14	PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo]	[more]
gi\|778691860\|ref\|XP_011653365.1\|	2.1e-32	51.60	PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus]	[more]
gi\|255573378\|ref\|XP_002527615.1\|	1.7e-13	42.40	PREDICTED: uncharacterized protein LOC8289594 [Ricinus communis]	[more]
gi\|747101250\|ref\|XP_011098748.1\|	3.2e-12	61.54	PREDICTED: uncharacterized protein LOC105177327 [Sesamum indicum]	[more]
gi\|1009125794\|ref\|XP_015879802.1\|	3.2e-12	40.50	PREDICTED: uncharacterized protein LOC107415903 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G004470.1	CmaCh01G004470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36747	FAMILY NOT NAMED	coord: 115..155 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G004470	Cla010784	Watermelon (97103) v1	cmawmB431
CmaCh01G004470	ClCG07G016320	Watermelon (Charleston Gray)	cmawcgB425
CmaCh01G004470	CmoCh01G004800	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G004470	Lsi07G009920	Bottle gourd (USVL1VR-Ls)	cmalsiB448
CmaCh01G004470	Cp4.1LG02g14070	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G004470	Cla97C07G143280	Watermelon (97103) v2	cmawmbB492
CmaCh01G004470	Carg20396	Silver-seed gourd	carcmaB0982

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G004470	Wax gourd	cmawgoB0563
CmaCh01G004470	Cucurbita maxima (Rimu)	cmacmaB256
CmaCh01G004470	Cucumber (Gy14) v1	cgycmaB0763
CmaCh01G004470	Cucurbita moschata (Rifu)	cmacmoB463
CmaCh01G004470	Melon (DHL92) v3.5.1	cmameB435
CmaCh01G004470	Cucurbita pepo (Zucchini)	cmacpeB495
CmaCh01G004470	Melon (DHL92) v3.6.1	cmamedB502
CmaCh01G004470	Silver-seed gourd	carcmaB1138