CmaCh01G003520 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G003520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description2-isopropylmalate synthase 1
LocationCma_Chr01 : 1745352 .. 1747016 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGGTATACATTTTCTTCCCTATCATTTAAAGTAATTAAACTTAGCTATTATTTTCTAAATTTCTTCAATTTTGCCCATCTCGTTGTCTGTTGGTACACTTAACCAACATGGCATGATGTTTAAGGAGTTAAGACAAAACCTTAGAAGAGCTTAAGCGGGAAAATTTTCTAAGTTTGTCTCACATTCCTATTTAAGTTGGCAAAAATTCCAAATTTTCTGAGGTGATCGTTCCTTCTCTGATTTTTGCCAATGACTATATAGCATTCCTGGAAGAACATAAAAGGGTATAATTAATAAAAATTTAAAACTTAAGGGACTAAATTGAAAGAACACTCCAACATTAGTGACTAAACTGTATATTTTAACAATTTTTAAATACAATCATATTCAAGTACTTTTGCCTCTTTGTTATTGGATCTAGGCTTCCTTATGTTTAACTTGAGAAGACTAGGATGGCCATTAGTATCGTGAAAAATAAAGGGATTTAGAAGGAATGAATTCAAACTAGGGTAGTAACCTATATGGAGAATTTAAACGTTTTGTCTTGCAACTAATTGTACTTGTAAGCTTAGTTGGTTGTCTCCCTGTTTCCAGCCTCTCTCCCCCTAACCTAACTAGTTGGTTGTCTCCCTGTTTCCAGCCTCTCTCCCCCTAACCTAACAGGCGAAGTTCACAACCTTGAGCTCTAGATTTCGATAGGAACAACCACATCACTACTAGTCTGCAAAAAAAAAAAAAAAAAGGACGGACTTGGCTTCATTTCTCACTCTATCAAAAATTACGTAACGTATAAGGACATATAAGGATAAGAAGCACATACATATAGAGAGGTGAAAATGACGGAGCTGACCAACTATGATATAGATATTTTACTTAGCTCCATTTTCTCGGTTCAGGTATGGGCAAACCTAATTAGATGCCTACCAATTATAAAAAATAGAATAGAGGCAATGTGGATCCACCTATATATAGGGAAGGGTTCAAACTACGGTGGCTATCTACTTTGGATTTAACTTCCTATGAGTTCTTCTGTATAATTAGACAAAATGTGTGCAAGTTGACTCGTTTACTCGCTGGTTAAAATTAAGAGGACCAACCGATATCAACCCATATGAAATTCAACGTGAATTCTGTTACTGTTTTATATTCTTCTCTGGCTACAGTACATCGATGACTCGATATTTAGTGATATGTTTTTATCGTTCCATTGCAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGATGGTGGCAATCTTACATTCTCAACATGCTTGAAAGCTTTTAGCATTTTGGGTTAAGTTTGCTTTAATTATCAGTATTTGGTTGGTTGTGTTAGACCGCGTTTTAAACTTCGGTGAACTTTGTGTTAGTTAAAGTTGAACAAAAAAGGGAAA

mRNA sequence

ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGATGGTGGCAATCTTACATTCTCAACATGCTTGAAAGCTTTTAGCATTTTGGGTTAAGTTTGCTTTAATTATCAGTATTTGGTTGGTTGTGTTAGACCGCGTTTTAAACTTCGGTGAACTTTGTGTTAGTTAAAGTTGAACAAAAAAGGGAAA

Coding sequence (CDS)

ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGA

Protein sequence

MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVASLKAYIGALNKMLGFYGVDVKVTEKITVCIKIVYLRRG
Homology
[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU12_ARATH (2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-28
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 536 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 595

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 596 VSSVKAYVGALNKMLGF 612

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU11_ARATH (2-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-27
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRG N Y STNA  GEEVQRTFSG GAGMDI+
Sbjct: 538 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIV 597

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKM+ F
Sbjct: 598 VSSVKAYVGALNKMMDF 614

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1B_SOLPN (2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-22
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 1 

Query: 4   PVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVAS 63
           PVTLL+YSMN+VT+GIDAIA+TRV+IRG+N + ST+A  GE V RTFSG GA MDI+++S
Sbjct: 523 PVTLLEYSMNAVTQGIDAIASTRVLIRGENGHTSTHALTGETVHRTFSGTGADMDIVISS 582

Query: 64  LKAYIGALNKMLGF 78
           ++AY+GALNKM+ F
Sbjct: 583 VRAYVGALNKMMSF 596

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1A_SOLPN (2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-18
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 4   PVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVAS 63
           P+TLL+YSMN+VTEGIDAIA+TRV I   + +   N S G+ + RTFSG GA MD++++S
Sbjct: 500 PITLLEYSMNAVTEGIDAIASTRVSICSIDRHTIMNGSTGQTIHRTFSGTGADMDVVISS 559

Query: 64  LKAYIGALNKMLGF 78
           ++AYIGALNKML +
Sbjct: 560 VRAYIGALNKMLSY 573

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1_SOYBN (Probable 2-isopropylmalate synthase OS=Glycine max GN=GMN56 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-13
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP  LLDYS+NSVTEGI    T RVVI  +N++ ST A   +    TFSGI A MD++
Sbjct: 482 VKEPTKLLDYSLNSVTEGIGVNVTARVVICRENNHTSTYAFTEDANYPTFSGIAAEMDVV 541

Query: 61  VASLKAYIGALNKML 76
           V+++KAY+ ALNK+L
Sbjct: 542 VSTVKAYLVALNKLL 556

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: A0A0A0L7C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G363180 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 542 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 601

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAYIGALNKMLGF G+D+KVTE+ T+
Sbjct: 602 VSSVKAYIGALNKMLGFQGIDIKVTEEKTL 631

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: V4M9C9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018267mg PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE VQRTFSG GAGMDI+
Sbjct: 535 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVQRTFSGAGAGMDIV 594

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAY+GALNKMLGF         K T+
Sbjct: 595 VSSVKAYVGALNKMLGFKERSFSTLSKTTL 624

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: B9DI07_ARATH (AT1G74040 protein (Fragment) OS=Arabidopsis thaliana GN=At1g74040 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 396 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 455

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 456 VSSVKAYVGALNKMLGF 472

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: D7KRQ1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476544 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 530 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 589

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 590 VSSVKAYVGALNKMLGF 606

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: A0A087HI90_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G178400 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN VTEGIDAI TTRV+IRGDN+Y STNA  GE VQRTFSG GAGMD++
Sbjct: 305 VKEPTTLLEYSMNGVTEGIDAITTTRVLIRGDNNYSSTNAVTGESVQRTFSGTGAGMDVV 364

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 365 VSSVKAYVGALNKMLGF 381

[Close]
BLAST of CmaCh01G003520 vs. TAIR10
Match: AT1G74040.1 (AT1G74040.1 2-isopropylmalate synthase 1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-29
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 536 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 595

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 596 VSSVKAYVGALNKMLGF 612

[Close]
BLAST of CmaCh01G003520 vs. TAIR10
Match: AT1G18500.1 (AT1G18500.1 methylthioalkylmalate synthase-like 4)

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-28
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRG N Y STNA  GEEVQRTFSG GAGMDI+
Sbjct: 538 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIV 597

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKM+ F
Sbjct: 598 VSSVKAYVGALNKMMDF 614

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|778680958|ref|XP_011651428.1| (PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.0e-31
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 542 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 601

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAYIGALNKMLGF G+D+KVTE+ T+
Sbjct: 602 VSSVKAYIGALNKMLGFQGIDIKVTEEKTL 631

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|659114493|ref|XP_008457079.1| (PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 9.8e-30
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 544 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 603

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEK 88
           V+S+KAYIGALNKMLGF G+D+K T++
Sbjct: 604 VSSVKAYIGALNKMLGFQGIDIKETKE 630

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|567121705|ref|XP_006390475.1| (hypothetical protein EUTSA_v10018267mg [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE VQRTFSG GAGMDI+
Sbjct: 535 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVQRTFSGAGAGMDIV 594

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAY+GALNKMLGF         K T+
Sbjct: 595 VSSVKAYVGALNKMLGFKERSFSTLSKTTL 624

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|645218833|ref|XP_008232670.1| (PREDICTED: 2-isopropylmalate synthase 1, chloroplastic-like isoform X1 [Prunus mume])

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 61/76 (80.26%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 2   QEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIV 61
           QEPVTLL+YSMN+VTEGIDAIATTRV+IRG+NS ++T+A  GE VQRTFSGIGAGMDI+V
Sbjct: 541 QEPVTLLEYSMNAVTEGIDAIATTRVLIRGENSNITTHAFTGETVQRTFSGIGAGMDIVV 600

Query: 62  ASLKAYIGALNKMLGF 78
           +S+KAY+GALNKMLGF
Sbjct: 601 SSVKAYVGALNKMLGF 616

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|222424844|dbj|BAH20374.1| (AT1G74040 [Arabidopsis thaliana])

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 396 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 455

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 456 VSSVKAYVGALNKMLGF 472

The following BLAST results are available for this feature:
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LEU12_ARATH5.4e-2877.922-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=... [more]
LEU11_ARATH4.5e-2776.622-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=... [more]
LEU1B_SOLPN1.5e-2267.572-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1[more]
LEU1A_SOLPN2.3e-1859.462-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1[more]
LEU1_SOYBN1.7e-1353.33Probable 2-isopropylmalate synthase OS=Glycine max GN=GMN56 PE=2 SV=1[more]
BLAST of CmaCh01G003520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C8_CUCSA2.8e-3177.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G363180 PE=3 SV=1[more]
V4M9C9_EUTSA2.1e-2670.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018267mg PE=3 SV=1[more]
B9DI07_ARATH6.0e-2677.92 protein (Fragment) OS=Arabidopsis thaliana GN=At1g74040 PE=2 SV=1[more]
D7KRQ1_ARALL6.0e-2677.92Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A087HI90_ARAAL1.3e-2576.62Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G178400 PE=4 SV=1[more]
BLAST of CmaCh01G003520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74040.13.0e-2977.92 2-isopropylmalate synthase 1[more]
AT1G18500.12.6e-2876.62 methylthioalkylmalate synthase-like 4[more]
BLAST of CmaCh01G003520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680958|ref|XP_011651428.1|4.0e-3177.78PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus][more]
gi|659114493|ref|XP_008457079.1|9.8e-3077.01PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis melo][more]
gi|567121705|ref|XP_006390475.1|2.9e-2670.00hypothetical protein EUTSA_v10018267mg [Eutrema salsugineum][more]
gi|645218833|ref|XP_008232670.1|8.6e-2680.26PREDICTED: 2-isopropylmalate synthase 1, chloroplastic-like isoform X1 [Prunus m... [more]
gi|222424844|dbj|BAH20374.1|8.6e-2677.92 [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0137092-isopropylmalate_synth_dimer
Vocabulary: Molecular Function
TermDefinition
GO:00038522-isopropylmalate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009098leucine biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0009099 valine biosynthetic process
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003852 2-isopropylmalate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G003520.1CmaCh01G003520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0137092-isopropylmalate synthase LeuA, allosteric (dimerisation) domainPFAMPF08502LeuA_dimercoord: 2..75
score: 2.4
IPR0137092-isopropylmalate synthase LeuA, allosteric (dimerisation) domainunknownSSF1109212-isopropylmalate synthase LeuA, allosteric (dimerisation) domaincoord: 4..74
score: 2.48
NoneNo IPR availablePANTHERPTHR10277HOMOCITRATE SYNTHASE-RELATEDcoord: 1..83
score: 1.2
NoneNo IPR availablePANTHERPTHR10277:SF9HOMOCITRATE SYNTHASE, CYTOSOLIC ISOZYME-RELATEDcoord: 1..83
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G003520Cucumber (Gy14) v1cgycmaB0551
CmaCh01G003520Cucurbita moschata (Rifu)cmacmoB462
CmaCh01G003520Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G003520Melon (DHL92) v3.5.1cmameB431
CmaCh01G003520Watermelon (Charleston Gray)cmawcgB407
CmaCh01G003520Watermelon (97103) v1cmawmB434
CmaCh01G003520Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G003520Cucurbita pepo (Zucchini)cmacpeB494
CmaCh01G003520Bottle gourd (USVL1VR-Ls)cmalsiB440
CmaCh01G003520Cucumber (Gy14) v2cgybcmaB368
CmaCh01G003520Melon (DHL92) v3.6.1cmamedB496
CmaCh01G003520Silver-seed gourdcarcmaB0241
CmaCh01G003520Silver-seed gourdcarcmaB1059
CmaCh01G003520Cucumber (Chinese Long) v3cmacucB0547
CmaCh01G003520Watermelon (97103) v2cmawmbB473
CmaCh01G003520Wax gourdcmawgoB0559
CmaCh01G003520Cucurbita maxima (Rimu)cmacmaB255