CmaCh01G003520 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G003520
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description2-isopropylmalate synthase 1
LocationCma_Chr01 : 1745352 .. 1747016 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGGTATACATTTTCTTCCCTATCATTTAAAGTAATTAAACTTAGCTATTATTTTCTAAATTTCTTCAATTTTGCCCATCTCGTTGTCTGTTGGTACACTTAACCAACATGGCATGATGTTTAAGGAGTTAAGACAAAACCTTAGAAGAGCTTAAGCGGGAAAATTTTCTAAGTTTGTCTCACATTCCTATTTAAGTTGGCAAAAATTCCAAATTTTCTGAGGTGATCGTTCCTTCTCTGATTTTTGCCAATGACTATATAGCATTCCTGGAAGAACATAAAAGGGTATAATTAATAAAAATTTAAAACTTAAGGGACTAAATTGAAAGAACACTCCAACATTAGTGACTAAACTGTATATTTTAACAATTTTTAAATACAATCATATTCAAGTACTTTTGCCTCTTTGTTATTGGATCTAGGCTTCCTTATGTTTAACTTGAGAAGACTAGGATGGCCATTAGTATCGTGAAAAATAAAGGGATTTAGAAGGAATGAATTCAAACTAGGGTAGTAACCTATATGGAGAATTTAAACGTTTTGTCTTGCAACTAATTGTACTTGTAAGCTTAGTTGGTTGTCTCCCTGTTTCCAGCCTCTCTCCCCCTAACCTAACTAGTTGGTTGTCTCCCTGTTTCCAGCCTCTCTCCCCCTAACCTAACAGGCGAAGTTCACAACCTTGAGCTCTAGATTTCGATAGGAACAACCACATCACTACTAGTCTGCAAAAAAAAAAAAAAAAAGGACGGACTTGGCTTCATTTCTCACTCTATCAAAAATTACGTAACGTATAAGGACATATAAGGATAAGAAGCACATACATATAGAGAGGTGAAAATGACGGAGCTGACCAACTATGATATAGATATTTTACTTAGCTCCATTTTCTCGGTTCAGGTATGGGCAAACCTAATTAGATGCCTACCAATTATAAAAAATAGAATAGAGGCAATGTGGATCCACCTATATATAGGGAAGGGTTCAAACTACGGTGGCTATCTACTTTGGATTTAACTTCCTATGAGTTCTTCTGTATAATTAGACAAAATGTGTGCAAGTTGACTCGTTTACTCGCTGGTTAAAATTAAGAGGACCAACCGATATCAACCCATATGAAATTCAACGTGAATTCTGTTACTGTTTTATATTCTTCTCTGGCTACAGTACATCGATGACTCGATATTTAGTGATATGTTTTTATCGTTCCATTGCAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGATGGTGGCAATCTTACATTCTCAACATGCTTGAAAGCTTTTAGCATTTTGGGTTAAGTTTGCTTTAATTATCAGTATTTGGTTGGTTGTGTTAGACCGCGTTTTAAACTTCGGTGAACTTTGTGTTAGTTAAAGTTGAACAAAAAAGGGAAA

mRNA sequence

ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGATGGTGGCAATCTTACATTCTCAACATGCTTGAAAGCTTTTAGCATTTTGGGTTAAGTTTGCTTTAATTATCAGTATTTGGTTGGTTGTGTTAGACCGCGTTTTAAACTTCGGTGAACTTTGTGTTAGTTAAAGTTGAACAAAAAAGGGAAA

Coding sequence (CDS)

ATGCAGGAACCAGTAACACTGCTCGATTATTCAATGAATTCTGTCACCGAAGGGATCGATGCAATTGCCACTACTCGTGTTGTAATAAGAGGGGACAACAGTTACTTATCTACTAATGCATCGGCTGGAGAAGAAGTTCAACGAACGTTTAGTGGTATCGGAGCGGGAATGGACATCATCGTGGCAAGTCTCAAGGCCTACATTGGTGCATTAAACAAGATGCTTGGTTTCTACGGAGTTGATGTTAAGGTGACCGAAAAAATAACAGTCTGTATAAAAATTGTTTATTTGAGAAGAGGATGA

Protein sequence

MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVASLKAYIGALNKMLGFYGVDVKVTEKITVCIKIVYLRRG
Homology
[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU12_ARATH (2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-28
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 536 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 595

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 596 VSSVKAYVGALNKMLGF 612

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU11_ARATH (2-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-27
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRG N Y STNA  GEEVQRTFSG GAGMDI+
Sbjct: 538 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIV 597

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKM+ F
Sbjct: 598 VSSVKAYVGALNKMMDF 614

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1B_SOLPN (2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-22
Identity = 50/74 (67.57%), Postives = 65/74 (87.84%), Query Frame = 1 

Query: 4   PVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVAS 63
           PVTLL+YSMN+VT+GIDAIA+TRV+IRG+N + ST+A  GE V RTFSG GA MDI+++S
Sbjct: 523 PVTLLEYSMNAVTQGIDAIASTRVLIRGENGHTSTHALTGETVHRTFSGTGADMDIVISS 582

Query: 64  LKAYIGALNKMLGF 78
           ++AY+GALNKM+ F
Sbjct: 583 VRAYVGALNKMMSF 596

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1A_SOLPN (2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-18
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 4   PVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIVAS 63
           P+TLL+YSMN+VTEGIDAIA+TRV I   + +   N S G+ + RTFSG GA MD++++S
Sbjct: 500 PITLLEYSMNAVTEGIDAIASTRVSICSIDRHTIMNGSTGQTIHRTFSGTGADMDVVISS 559

Query: 64  LKAYIGALNKMLGF 78
           ++AYIGALNKML +
Sbjct: 560 VRAYIGALNKMLSY 573

[Close]
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match: LEU1_SOYBN (Probable 2-isopropylmalate synthase OS=Glycine max GN=GMN56 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-13
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP  LLDYS+NSVTEGI    T RVVI  +N++ ST A   +    TFSGI A MD++
Sbjct: 482 VKEPTKLLDYSLNSVTEGIGVNVTARVVICRENNHTSTYAFTEDANYPTFSGIAAEMDVV 541

Query: 61  VASLKAYIGALNKML 76
           V+++KAY+ ALNK+L
Sbjct: 542 VSTVKAYLVALNKLL 556

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: A0A0A0L7C8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G363180 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-31
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 542 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 601

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAYIGALNKMLGF G+D+KVTE+ T+
Sbjct: 602 VSSVKAYIGALNKMLGFQGIDIKVTEEKTL 631

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: V4M9C9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018267mg PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE VQRTFSG GAGMDI+
Sbjct: 535 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVQRTFSGAGAGMDIV 594

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAY+GALNKMLGF         K T+
Sbjct: 595 VSSVKAYVGALNKMLGFKERSFSTLSKTTL 624

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: B9DI07_ARATH (AT1G74040 protein (Fragment) OS=Arabidopsis thaliana GN=At1g74040 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 396 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 455

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 456 VSSVKAYVGALNKMLGF 472

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: D7KRQ1_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476544 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 530 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 589

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 590 VSSVKAYVGALNKMLGF 606

[Close]
BLAST of CmaCh01G003520 vs. TrEMBL
Match: A0A087HI90_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G178400 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-25
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN VTEGIDAI TTRV+IRGDN+Y STNA  GE VQRTFSG GAGMD++
Sbjct: 305 VKEPTTLLEYSMNGVTEGIDAITTTRVLIRGDNNYSSTNAVTGESVQRTFSGTGAGMDVV 364

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 365 VSSVKAYVGALNKMLGF 381

[Close]
BLAST of CmaCh01G003520 vs. TAIR10
Match: AT1G74040.1 (AT1G74040.1 2-isopropylmalate synthase 1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-29
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 536 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 595

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 596 VSSVKAYVGALNKMLGF 612

[Close]
BLAST of CmaCh01G003520 vs. TAIR10
Match: AT1G18500.1 (AT1G18500.1 methylthioalkylmalate synthase-like 4)

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-28
Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRG N Y STNA  GEEVQRTFSG GAGMDI+
Sbjct: 538 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIV 597

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKM+ F
Sbjct: 598 VSSVKAYVGALNKMMDF 614

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|778680958|ref|XP_011651428.1| (PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.0e-31
Identity = 70/90 (77.78%), Postives = 82/90 (91.11%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 542 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 601

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAYIGALNKMLGF G+D+KVTE+ T+
Sbjct: 602 VSSVKAYIGALNKMLGFQGIDIKVTEEKTL 631

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|659114493|ref|XP_008457079.1| (PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 9.8e-30
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGD SY STNA  GE VQRTFSGIGAGMDI+
Sbjct: 544 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDKSYTSTNALTGEAVQRTFSGIGAGMDIV 603

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEK 88
           V+S+KAYIGALNKMLGF G+D+K T++
Sbjct: 604 VSSVKAYIGALNKMLGFQGIDIKETKE 630

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|567121705|ref|XP_006390475.1| (hypothetical protein EUTSA_v10018267mg [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE VQRTFSG GAGMDI+
Sbjct: 535 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVQRTFSGAGAGMDIV 594

Query: 61  VASLKAYIGALNKMLGFYGVDVKVTEKITV 91
           V+S+KAY+GALNKMLGF         K T+
Sbjct: 595 VSSVKAYVGALNKMLGFKERSFSTLSKTTL 624

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|645218833|ref|XP_008232670.1| (PREDICTED: 2-isopropylmalate synthase 1, chloroplastic-like isoform X1 [Prunus mume])

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 61/76 (80.26%), Postives = 72/76 (94.74%), Query Frame = 1 

Query: 2   QEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDIIV 61
           QEPVTLL+YSMN+VTEGIDAIATTRV+IRG+NS ++T+A  GE VQRTFSGIGAGMDI+V
Sbjct: 541 QEPVTLLEYSMNAVTEGIDAIATTRVLIRGENSNITTHAFTGETVQRTFSGIGAGMDIVV 600

Query: 62  ASLKAYIGALNKMLGF 78
           +S+KAY+GALNKMLGF
Sbjct: 601 SSVKAYVGALNKMLGF 616

[Close]
BLAST of CmaCh01G003520 vs. NCBI nr
Match: gi|222424844|dbj|BAH20374.1| (AT1G74040 [Arabidopsis thaliana])

HSP 1 Score: 124.8 bits (312), Expect = 8.6e-26
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MQEPVTLLDYSMNSVTEGIDAIATTRVVIRGDNSYLSTNASAGEEVQRTFSGIGAGMDII 60
           ++EP TLL+YSMN+VTEGIDAIATTRV+IRGDN+Y STNA  GE V+RTFSG GAGMDI+
Sbjct: 396 VKEPATLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIV 455

Query: 61  VASLKAYIGALNKMLGF 78
           V+S+KAY+GALNKMLGF
Sbjct: 456 VSSVKAYVGALNKMLGF 472

The following BLAST results are available for this feature:
BLAST of CmaCh01G003520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LEU12_ARATH5.4e-2877.922-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=... [more]
LEU11_ARATH4.5e-2776.622-isopropylmalate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=IPMS1 PE=... [more]
LEU1B_SOLPN1.5e-2267.572-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1[more]
LEU1A_SOLPN2.3e-1859.462-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1[more]
LEU1_SOYBN1.7e-1353.33Probable 2-isopropylmalate synthase OS=Glycine max GN=GMN56 PE=2 SV=1[more]
BLAST of CmaCh01G003520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7C8_CUCSA2.8e-3177.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G363180 PE=3 SV=1[more]
V4M9C9_EUTSA2.1e-2670.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018267mg PE=3 SV=1[more]
B9DI07_ARATH6.0e-2677.92 protein (Fragment) OS=Arabidopsis thaliana GN=At1g74040 PE=2 SV=1[more]
D7KRQ1_ARALL6.0e-2677.92Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A087HI90_ARAAL1.3e-2576.62Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G178400 PE=4 SV=1[more]
BLAST of CmaCh01G003520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74040.13.0e-2977.92 2-isopropylmalate synthase 1[more]
AT1G18500.12.6e-2876.62 methylthioalkylmalate synthase-like 4[more]
BLAST of CmaCh01G003520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680958|ref|XP_011651428.1|4.0e-3177.78PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis sativus][more]
gi|659114493|ref|XP_008457079.1|9.8e-3077.01PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Cucumis melo][more]
gi|567121705|ref|XP_006390475.1|2.9e-2670.00hypothetical protein EUTSA_v10018267mg [Eutrema salsugineum][more]
gi|645218833|ref|XP_008232670.1|8.6e-2680.26PREDICTED: 2-isopropylmalate synthase 1, chloroplastic-like isoform X1 [Prunus m... [more]
gi|222424844|dbj|BAH20374.1|8.6e-2677.92 [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0137092-isopropylmalate_synth_dimer
Vocabulary: Molecular Function
TermDefinition
GO:00038522-isopropylmalate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009098leucine biosynthetic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0009099 valine biosynthetic process
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003852 2-isopropylmalate synthase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G003520.1CmaCh01G003520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0137092-isopropylmalate synthase LeuA, allosteric (dimerisation) domainPFAMPF08502LeuA_dimercoord: 2..75
score: 2.4
IPR0137092-isopropylmalate synthase LeuA, allosteric (dimerisation) domainunknownSSF1109212-isopropylmalate synthase LeuA, allosteric (dimerisation) domaincoord: 4..74
score: 2.48
NoneNo IPR availablePANTHERPTHR10277HOMOCITRATE SYNTHASE-RELATEDcoord: 1..83
score: 1.2
NoneNo IPR availablePANTHERPTHR10277:SF9HOMOCITRATE SYNTHASE, CYTOSOLIC ISOZYME-RELATEDcoord: 1..83
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G003520Cucurbita maxima (Rimu)cmacmaB255
CmaCh01G003520Cucumber (Gy14) v1cgycmaB0551
CmaCh01G003520Cucurbita moschata (Rifu)cmacmoB462
CmaCh01G003520Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G003520Melon (DHL92) v3.5.1cmameB431
CmaCh01G003520Watermelon (Charleston Gray)cmawcgB407
CmaCh01G003520Watermelon (97103) v1cmawmB434
CmaCh01G003520Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G003520Cucurbita pepo (Zucchini)cmacpeB494
CmaCh01G003520Bottle gourd (USVL1VR-Ls)cmalsiB440
CmaCh01G003520Cucumber (Gy14) v2cgybcmaB368
CmaCh01G003520Melon (DHL92) v3.6.1cmamedB496
CmaCh01G003520Silver-seed gourdcarcmaB0241
CmaCh01G003520Silver-seed gourdcarcmaB1059
CmaCh01G003520Cucumber (Chinese Long) v3cmacucB0547
CmaCh01G003520Watermelon (97103) v2cmawmbB473
CmaCh01G003520Wax gourdcmawgoB0559