CmaCh01G003490 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Protein TIC 214
Location	Cma_Chr01 : 1729517 .. 1731666 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGTCCAGCATCCAATGCACGAACTGTGAATGCTAGTGATACACCAGTCTCCTTAACACCATCCTAAAAGTAGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAACCTTACAAGTTAGAACTACTTGAAGACATTGTTAAATAGAATTCAATGTATCAAATATCAACTTGTAAGCATAAGCAACCTGCAATGCCCGTTGGACAGGTGCAGCACCACGATATAATGGCAAGAGACTTGGGTGAATATTGACAGTCCCTGAGGGATCATAATTACAAAAACGACTATTTAGACGACTCCAAGAGGAAGAAGAAAAACAATCAACTCCCAAATTTGATCAGGTTCTCTTTCCATCTCATGAAAGATTCTTCTAATCTCTTCTAGTTCAGACTGTATTTCCAATGACAGTGTTTTAATTTGGATACCAACAAGAAATTTAGGTTTACCTAATGCTGGAATATTGAGAAATTTGGTCGGTAAGATATTCCCATATGCTGCTGTAATACATAGTTCTGGTTGCAAAGCCTTTAAGGTGCTCAAAAATTTGTCCTGCAAGAAAATAAGAAGAAAAAGAGCATTCTACATGGCTTACAAAACTTTTCCGTTAACAAGAGCGTTACACAAGGTTCAAAAGTTTCAAATATAGTATTACTGTAACTAAGTCTAAAAACTGTCACCATTGATCATAGGCAGAAGTGAGAATATGTCAAAAAAAATAGGTCTTATGAAAAATAGAACTGGGATATCCTTGAGAGTATTATTGTGCGTGCATGTGCAAAGAAATAAATGAGACAAGGTTGATGTAACGGCCCAAGCCCACAGCTAGCCGATATTATCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCGAGGTTTTTAAAATACATCTGCTATCTAGGACTCATTCCCTTCTCCAATTGATGTGGGACCCTCCAATCCACCCCCTTTGGGGCCAAGCGTCCTTGCTAGCACACCGCCTCATGTCCAGGGTTCAACGTCCTTGCTAGCACACCGTCTCATGTCTAGGGCCTAACGTCCTTACTAGCACACCGCCTCATGTCCAGGGCCAGCGTCCTTGCTGGCACACCACCTCGTGTCCACCCCTTTCGGGGCTCGGCCTCCTCGATGGCACATCGCTCGATGTCTAGCTCTGATACCATTTGTAACGGTCCATGTCCACAGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTGAGAGGAGCCTTTCGAGTTTCCTCTCAAGGTTTTTAAAACGTTGTGTCAGAATTCAGAAATTTTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGNCACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTCAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAAGATAAAAAGACCTGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTACAAAATGCTGATAGATTTAGATACAGACGAAAAAGATATCTTCTAG

mRNA sequence

ATGACGGGTCCAGCATCCAATGCACGAACTGTGAATGCTATCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTCAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAAGATAAAAAGACCTGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTACAAAATGCTGATAGATTTAGATACAGACGAAAAAGATATCTTCTAG

Coding sequence (CDS)

ATGACGGGTCCAGCATCCAATGCACGAACTGTGAATGCTATCAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTCAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAAGATAAAAAGACCTGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTACAAAATGCTGATAGATTTAGATACAGACGAAAAAGATATCTTCTAG

Protein sequence

MTGPASNARTVNAIRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDEKDIF

Homology

[Close]

BLAST of CmaCh01G003490 vs. Swiss-Prot
Match: TI214_POPTR (Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-69
Identity = 156/211 (73.93%), Postives = 164/211 (77.73%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS------IRSNKY 73
           +RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS      IRSNKY
Sbjct: 153 VRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSLRSNKYIRSNKY 212

Query: 74  LVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLK--------------------ET 133
           LVSE RNSMARIFSILLFITCVY LGRIPSPI TKKLK                    ET
Sbjct: 213 LVSELRNSMARIFSILLFITCVYSLGRIPSPIFTKKLKETSETEEREEETDVEIETTPET 272

Query: 134 EGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDE--FHFKRTRYQKI 193
           +GTKQEQEGSTEED S SLFSEEKE+PDKIDETEEIRVNGKEKTKDE  FHFK T Y+  
Sbjct: 273 KGTKQEQEGSTEEDPSSSLFSEEKENPDKIDETEEIRVNGKEKTKDEFHFHFKETCYK-- 332

Query: 194 KRPVYETSYPPDGNKENYKMLIDLDTDEKDI 197
            RPVYET Y  DGN+EN K+ I LD  +KD+
Sbjct: 333 NRPVYETFY-LDGNQENSKLEIFLDKKDKDL 360

[Close]

BLAST of CmaCh01G003490 vs. Swiss-Prot
Match: TI214_POPAL (Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-69
Identity = 156/211 (73.93%), Postives = 164/211 (77.73%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS------IRSNKY 73
           +RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS      IRSNKY
Sbjct: 153 VRLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSLRSNKYIRSNKY 212

Query: 74  LVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLK--------------------ET 133
           LVSE RNSMARIFSILLFITCVY LGRIPSPI TKKLK                    ET
Sbjct: 213 LVSELRNSMARIFSILLFITCVYSLGRIPSPIFTKKLKETSETEEREEETDVEIETTPET 272

Query: 134 EGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDE--FHFKRTRYQKI 193
           +GTKQEQEGSTEED S SLFSEEKE+PDKIDETEEIRVNGKEKTKDE  FHFK T Y+  
Sbjct: 273 KGTKQEQEGSTEEDPSSSLFSEEKENPDKIDETEEIRVNGKEKTKDEFHFHFKETCYK-- 332

Query: 194 KRPVYETSYPPDGNKENYKMLIDLDTDEKDI 197
            RPVYET Y  DGN+EN K+ I LD  +KD+
Sbjct: 333 NRPVYETFY-LDGNQENSKLEIFLDKKDKDL 360

[Close]

BLAST of CmaCh01G003490 vs. Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-69
Identity = 153/211 (72.51%), Postives = 163/211 (77.25%), Query Frame = 1


Query: 15  RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSN------KYL 74
           RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGL+LVWI+QN SIRSN      KYL
Sbjct: 154 RLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIRQNPSIRSNVLIRSNKYL 213

Query: 75  VSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLKET--------------------- 134
           VSE RNSMARIFSILLFITCVYYLGRIPSPILTKK+KET                     
Sbjct: 214 VSELRNSMARIFSILLFITCVYYLGRIPSPILTKKMKETSETEERGESEEETDVEIERTS 273

Query: 135 --EGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKRTRYQKI 194
             +GTKQEQE STEED SPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFK T Y+  
Sbjct: 274 ETKGTKQEQERSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKETCYK-- 333

Query: 195 KRPVYETSYPPDGNKENYKM-LIDLDTDEKD 196
             PVYETSY  DGN+EN K+ ++  D D K+
Sbjct: 334 NSPVYETSY-LDGNQENSKLEILKEDEDNKN 361

[Close]

BLAST of CmaCh01G003490 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 147/212 (69.34%), Postives = 162/212 (76.42%), Query Frame = 1


Query: 15  RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNS------IRSNKYL 74
           RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGL+L WI+QN+S      IRSNKYL
Sbjct: 151 RLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLFWIRQNHSIKSNVLIRSNKYL 210

Query: 75  VSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLK----------------------- 134
           VSE RNSMARIFSILLFITCVYYLGR+P+PI+TKKLK                       
Sbjct: 211 VSELRNSMARIFSILLFITCVYYLGRMPAPIVTKKLKETSKTEERGESEEERDVEIETTS 270

Query: 135 ETEGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKRTRYQKI 194
           ET+GTKQEQE STEED SPSL SEEKEDPDKIDETEEIRVNGKEKTKDE  FK T Y+  
Sbjct: 271 ETKGTKQEQERSTEEDPSPSLCSEEKEDPDKIDETEEIRVNGKEKTKDE--FKETCYK-- 330

Query: 195 KRPVYETSYPPDGNKENYKMLIDLDTDEKDIF 198
            RPVYE +Y  +GN+EN K+ I  D ++KD+F
Sbjct: 331 SRPVYE-NYYLNGNQENSKLEILKDKEDKDLF 357

[Close]

BLAST of CmaCh01G003490 vs. Swiss-Prot
Match: TI214_SPIOL (Protein TIC 214 OS=Spinacia oleracea GN=TIC214 PE=3 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-62
Identity = 140/203 (68.97%), Postives = 153/203 (75.37%), Query Frame = 1


Query: 15  RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFRN 74
           RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGL+LVWIQQNNSIRSNKYLVSE RN
Sbjct: 154 RLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNKYLVSELRN 213

Query: 75  SMARIFSILLFITCVYYLGRIPSPILTKKLK--------------------ETEGTKQEQ 134
           SMARIFSIL FITCVYYLGR+PSPI T KLK                    ET+ TKQE+
Sbjct: 214 SMARIFSILFFITCVYYLGRMPSPIFTNKLKQMLETNEIEEETNLEIEKTSETKETKQEE 273

Query: 135 EGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSY 194
           EG TEED SPSLFSEEKEDPDKIDETE+IRVNGK+KTKDEFH K   Y+        TSY
Sbjct: 274 EGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHLKEACYKN-----SPTSY 333

Query: 195 PPDGNKENYKMLIDLDTDEKDIF 198
              GN++  K+ I L  ++K +F
Sbjct: 334 --SGNQDISKLEI-LKKEKKILF 348

[Close]

BLAST of CmaCh01G003490 vs. TrEMBL
Match: A0A0S2IEM6_9ROSI (Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-95
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

[Close]

BLAST of CmaCh01G003490 vs. TrEMBL
Match: A0A0S2IFI7_9ROSI (Uncharacterized protein OS=Cucurbita andreana PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.1e-95
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KD+F
Sbjct: 330 KDMF 333

[Close]

BLAST of CmaCh01G003490 vs. TrEMBL
Match: A0A0S2IGJ6_9ROSI (Ycf1 OS=Cucurbita andreana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.1e-95
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KD+F
Sbjct: 330 KDMF 333

[Close]

BLAST of CmaCh01G003490 vs. TrEMBL
Match: A0A0S2IDC6_9ROSI (Uncharacterized protein OS=Cucurbita argyrosperma PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-94
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKEN KML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENDKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

[Close]

BLAST of CmaCh01G003490 vs. TrEMBL
Match: A0A0S2IE08_9ROSI (Uncharacterized protein OS=Cucurbita argyrosperma var. palmeri PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-94
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKEN KML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENDKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

[Close]

BLAST of CmaCh01G003490 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-58
Identity = 136/181 (75.14%), Postives = 141/181 (77.90%), Query Frame = 1


Query: 15  RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSN--------K 74
           RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGL+LVWIQQNNSIRSN        K
Sbjct: 155 RLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYK 214

Query: 75  YLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLK---ETEGTKQEQEGSTEEDTS 134
           +LVSE RNSMARIFSILLFITCVYYLGRIPSPI TKKLK   ET GTKQ+QE STEE   
Sbjct: 215 FLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPF 274

Query: 135 PSLFSEEKEDPDKIDETEEIRVNGKEKTK--DEFHFKRTRYQKIKRPVYETSYPPDGNKE 183
           PSLFSEE ED DKIDE EEIRVNGK+K    DEFH  RT Y    + V E  Y   GNKE
Sbjct: 275 PSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHV-RTYYN--YKTVSENLY---GNKE 329

[Close]

BLAST of CmaCh01G003490 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-58
Identity = 136/181 (75.14%), Postives = 141/181 (77.90%), Query Frame = 1


Query: 15  RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSN--------K 74
           RLVNI MFRCNNKMLFVTSSFVGWLIGHILFMKWVGL+LVWIQQNNSIRSN        K
Sbjct: 155 RLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYK 214

Query: 75  YLVSEFRNSMARIFSILLFITCVYYLGRIPSPILTKKLK---ETEGTKQEQEGSTEEDTS 134
           +LVSE RNSMARIFSILLFITCVYYLGRIPSPI TKKLK   ET GTKQ+QE STEE   
Sbjct: 215 FLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPF 274

Query: 135 PSLFSEEKEDPDKIDETEEIRVNGKEKTK--DEFHFKRTRYQKIKRPVYETSYPPDGNKE 183
           PSLFSEE ED DKIDE EEIRVNGK+K    DEFH  RT Y    + V E  Y   GNKE
Sbjct: 275 PSLFSEEGEDLDKIDEMEEIRVNGKDKINKDDEFHV-RTYYN--YKTVSENLY---GNKE 329

[Close]

BLAST of CmaCh01G003490 vs. NCBI nr
Match: gi|952954690|gb|ALO22049.1| (hypothetical protein (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 357.1 bits (915), Expect = 2.0e-95
Identity = 182/184 (98.91%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

[Close]

BLAST of CmaCh01G003490 vs. NCBI nr
Match: gi|952954978|gb|ALO22333.1| (Ycf1 (plastid) [Cucurbita andreana])

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KD+F
Sbjct: 330 KDMF 333

[Close]

BLAST of CmaCh01G003490 vs. NCBI nr
Match: gi|952954957|gb|ALO22312.1| (hypothetical protein (plastid) [Cucurbita andreana])

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 181/184 (98.37%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLLDLDTDE 329

Query: 194 KDIF 198
           KD+F
Sbjct: 330 KDMF 333

[Close]

BLAST of CmaCh01G003490 vs. NCBI nr
Match: gi|952954340|gb|ALO21704.1| (Ycf1 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 353.2 bits (905), Expect = 2.9e-94
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKEN KML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENDKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

[Close]

BLAST of CmaCh01G003490 vs. NCBI nr
Match: gi|952954368|gb|ALO21732.1| (hypothetical protein (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 353.2 bits (905), Expect = 2.9e-94
Identity = 181/184 (98.37%), Postives = 183/184 (99.46%), Query Frame = 1


Query: 14  IRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 73
           +RLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR
Sbjct: 150 VRLVNISMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLILVWIQQNNSIRSNKYLVSEFR 209

Query: 74  NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 133
           NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED
Sbjct: 210 NSMARIFSILLFITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEKED 269

Query: 134 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENYKMLIDLDTDE 193
           PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKEN KML+DLDTDE
Sbjct: 270 PDKIDETEEIRVNGKEKTKDEFHFKRTRYQKIKRPVYETSYPPDGNKENDKMLLDLDTDE 329

Query: 194 KDIF 198
           KDIF
Sbjct: 330 KDIF 333

The following BLAST results are available for this feature:

BLAST of CmaCh01G003490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI214_POPTR	1.5e-69	73.93	Protein TIC 214 OS=Populus trichocarpa GN=TIC214 PE=3 SV=1	[more]
TI214_POPAL	1.5e-69	73.93	Protein TIC 214 OS=Populus alba GN=TIC214 PE=3 SV=1	[more]
TI214_VITVI	7.2e-69	72.51	Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1	[more]
TI214_BUXMI	1.1e-64	69.34	Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1	[more]
TI214_SPIOL	1.0e-62	68.97	Protein TIC 214 OS=Spinacia oleracea GN=TIC214 PE=3 SV=2	[more]

BLAST of CmaCh01G003490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IEM6_9ROSI	1.4e-95	98.91	Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1	[more]
A0A0S2IFI7_9ROSI	3.1e-95	98.37	Uncharacterized protein OS=Cucurbita andreana PE=4 SV=1	[more]
A0A0S2IGJ6_9ROSI	3.1e-95	98.37	Ycf1 OS=Cucurbita andreana GN=ycf1 PE=4 SV=1	[more]
A0A0S2IDC6_9ROSI	2.0e-94	98.37	Uncharacterized protein OS=Cucurbita argyrosperma PE=4 SV=1	[more]
A0A0S2IE08_9ROSI	2.0e-94	98.37	Uncharacterized protein OS=Cucurbita argyrosperma var. palmeri PE=4 SV=1	[more]

BLAST of CmaCh01G003490 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01130.1	2.1e-58	75.14	ATCG01130.1 Ycf1 protein	[more]
ATCG01000.1	2.1e-58	75.14	ATCG01000.1 Ycf1 protein	[more]

BLAST of CmaCh01G003490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954690\|gb\|ALO22049.1\|	2.0e-95	98.91	hypothetical protein (plastid) [Cucurbita ecuadorensis]	[more]
gi\|952954978\|gb\|ALO22333.1\|	4.5e-95	98.37	Ycf1 (plastid) [Cucurbita andreana]	[more]
gi\|952954957\|gb\|ALO22312.1\|	4.5e-95	98.37	hypothetical protein (plastid) [Cucurbita andreana]	[more]
gi\|952954340\|gb\|ALO21704.1\|	2.9e-94	98.37	Ycf1 (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954368\|gb\|ALO21732.1\|	2.9e-94	98.37	hypothetical protein (plastid) [Cucurbita argyrosperma]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008896	TIC214

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003490.1	CmaCh01G003490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 106..195 score: 4.5E-26coord: 14..110 score: 8.5
None	No IPR available	PANTHER	PTHR33163	FAMILY NOT NAMED	coord: 14..197 score: 7.5E
None	No IPR available	PANTHER	PTHR33163:SF3	MEMBRANE PROTEIN YCF1-RELATED	coord: 14..197 score: 7.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003490	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003490	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003490	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003490	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003490	Cucumber (Gy14) v2	cgybcmaB371
CmaCh01G003490	Melon (DHL92) v3.6.1	cmamedB496
CmaCh01G003490	Silver-seed gourd	carcmaB0241
CmaCh01G003490	Silver-seed gourd	carcmaB1059
CmaCh01G003490	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003490	Cucumber (Chinese Long) v3	cmacucB0550
CmaCh01G003490	Watermelon (97103) v2	cmawmbB473
CmaCh01G003490	Wax gourd	cmawgoB0559
CmaCh01G003490	Cucurbita maxima (Rimu)	cmacmaB255
CmaCh01G003490	Cucumber (Gy14) v1	cgycmaB0250
CmaCh01G003490	Cucumber (Gy14) v1	cgycmaB0551
CmaCh01G003490	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003490	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003490	Wild cucumber (PI 183967)	cmacpiB461
CmaCh01G003490	Cucumber (Chinese Long) v2	cmacuB458
CmaCh01G003490	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003490	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003490	Watermelon (97103) v1	cmawmB434