CmaCh00G006770 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G006770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPectin lyase-like superfamily protein
LocationCma_Chr00 : 46973097 .. 46973721 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAAAAGCTCAGTTTCTCTCTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTGATGTAAGAAAAACAAGAACCTTCTCCAATGGCTTCCTTCATCAGCCTCTCTTCAAAAAAGCTTCCATTTTTAATGCCTTTTAGCTTTAAATCCACCGACCCATTTCCCATTTTTGTATTTTGAATAAATTCTTGCAACCTTTTTTTAATTTTTTTATAACTTTTTTGGAGTTTTGAATAAATTTAAAATGCTGTTCTTGTTTTCACAGGCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGCGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATTAGTTGCAGAGCTCACACTGCTTCAATAACGGAGTTCGGCGGTGTTGGCGACGGCGAAACGTCGAATACAAAGGCGTTTCAGGCGGCCGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACTGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAG

mRNA sequence

CCCAAAAAGCTCAGTTTCTCTCTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTGATGCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGCGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATTAGTTGCAGAGCTCACACTGCTTCAATAACGGAGTTCGGCGGTGTTGGCGACGGCGAAACGTCGAATACAAAGGCGTTTCAGGCGGCCGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACTGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAG

Coding sequence (CDS)

ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTGATGCGGTGAAAATGACGTTTTTGGTACTTGTTTTGGCGGCGGCGGCGGCGGCGTTGATGGGAGAAGTTGAGGGAAGAAAGGCGAGGATTTTAGAGGACAATGGGATTGAATATGGCGCCATTAGTTGCAGAGCTCACACTGCTTCAATAACGGAGTTCGGCGGTGTTGGCGACGGCGAAACGTCGAATACAAAGGCGTTTCAGGCGGCCGTGGAGCGGCTGAGCCAGTACGCCGGGGACGGCGGCGCTCAGCTGTATGTGCCGGCGGGGAGGTGGCTCACTGGCAGCTTCAACCTTACTAGTCATTTCACTCTGTTTCTTCATCAGGATGCTGTTCTTCTCGCTTCTCAG

Protein sequence

MPMEELCKNPIKADAVKMTFLVLVLAAAAAALMGEVEGRKARILEDNGIEYGAISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ
Homology
[Close]
BLAST of CmaCh00G006770 vs. Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-33
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 1 

Query: 21  LVLVLAAAAAAL-MGEVEGRKARILEDNGIEYGAISCRAHTASITEFGGVGDGETSNTKA 80
           +V VL A    L +   E RK RILE   +EY AISCRAH+AS+ +FGGVGDG+T NTKA
Sbjct: 24  VVSVLVAVVLLLSVSRGECRKGRILE--ALEYSAISCRAHSASLVDFGGVGDGQTLNTKA 83

Query: 81  FQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 131
           FQ AV  LS+Y  +GGAQLYVPAG+WLTGSF+LTSHFTLFLH+DAVLLASQ
Sbjct: 84  FQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQ 132

[Close]
BLAST of CmaCh00G006770 vs. TrEMBL
Match: A0A0A0L8V4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121720 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-49
Identity = 108/138 (78.26%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MPMEELCKNPIKADAVKMTFLVLVLAAAAAALMGEVEGRK--------ARILEDNGIEYG 60
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGRK        A+ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIVAAA---LMDEVEGRKGKVKKGKKAKILEGNGIEYG 60

Query: 61  AISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 120
           AISCRAHTASITEFGGVGDG TSNTKAFQAAVE+LSQY  DGGAQLYVPAG+WLTGSFNL
Sbjct: 61  AISCRAHTASITEFGGVGDGVTSNTKAFQAAVEQLSQYTDDGGAQLYVPAGKWLTGSFNL 120

Query: 121 TSHFTLFLHQDAVLLASQ 131
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of CmaCh00G006770 vs. TrEMBL
Match: K4C131_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1 

Query: 8   KNPIKADAVKMTFL-VLVLAAAAAALMGEVEGRKARILEDNG---IEYGAISCRAHTASI 67
           K P+ +   K ++L V+VL     +L+G  EGRK+RIL+++    +EY AISCRAH+ASI
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGMVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASI 62

Query: 68  TEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQD 127
           T+FGGVGDG+T NTKAFQ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+D
Sbjct: 63  TDFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKD 122

Query: 128 AVLLASQ 131
           A+LLASQ
Sbjct: 123 AILLASQ 129

[Close]
BLAST of CmaCh00G006770 vs. TrEMBL
Match: A0A068VI29_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008903001 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-35
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 1 

Query: 23  LVLAAAAAALMGEVEGRKARILEDNG--IEYGAISCRAHTASITEFGGVGDGETSNTKAF 82
           LVL +A   ++G VE RK+RILE +    EY AISCR H+ASI EFGGVGDG T NTKAF
Sbjct: 18  LVLVSAVVCVIGRVECRKSRILEGSSDVFEYSAISCRGHSASIEEFGGVGDGRTLNTKAF 77

Query: 83  QAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 131
           Q AV +LSQYA +GGAQLYVPAG+WLTGSFNLTSHFTL+LH+DAVLLASQ
Sbjct: 78  QEAVNQLSQYASEGGAQLYVPAGKWLTGSFNLTSHFTLYLHKDAVLLASQ 127

[Close]
BLAST of CmaCh00G006770 vs. TrEMBL
Match: M1BYH4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 1 

Query: 21  LVLVLAAAAAALMGEVEGRKARILEDNG---IEYGAISCRAHTASITEFGGVGDGETSNT 80
           LV+++     +L+G  EGRK+RIL+++    +EY AISCRAH+ASIT+FGGVGDG+T NT
Sbjct: 8   LVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITDFGGVGDGKTLNT 67

Query: 81  KAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 131
           KAFQ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAVLLASQ
Sbjct: 68  KAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAVLLASQ 120

[Close]
BLAST of CmaCh00G006770 vs. TrEMBL
Match: M1BYH5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-35
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 1 

Query: 21  LVLVLAAAAAALMGEVEGRKARILEDNG---IEYGAISCRAHTASITEFGGVGDGETSNT 80
           LV+++     +L+G  EGRK+RIL+++    +EY AISCRAH+ASIT+FGGVGDG+T NT
Sbjct: 8   LVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITDFGGVGDGKTLNT 67

Query: 81  KAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 131
           KAFQ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAVLLASQ
Sbjct: 68  KAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAVLLASQ 120

[Close]
BLAST of CmaCh00G006770 vs. TAIR10
Match: AT3G61490.1 (AT3G61490.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-33
Identity = 63/81 (77.78%), Postives = 76/81 (93.83%), Query Frame = 1 

Query: 50  EYGAISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGS 109
           EY AI CR+H+ASITE+GGVGDG+T NTKAFQ+AV+ LSQY+ +GGAQL+VPAG+WLTGS
Sbjct: 34  EYTAIICRSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGS 93

Query: 110 FNLTSHFTLFLHQDAVLLASQ 131
           FNLTSHFTLFLH+DA+LLA+Q
Sbjct: 94  FNLTSHFTLFLHKDAILLAAQ 114

[Close]
BLAST of CmaCh00G006770 vs. TAIR10
Match: AT2G23900.1 (AT2G23900.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 5.1e-29
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 1 

Query: 5   ELCKNPIKADAVKMTFLVLVLAAAAAALMGEVEGRKARILEDNGIEYGAISCRAHTASIT 64
           E   NP     ++ +F +LV+ A ++  M  +E R         IEY A++CR HTA +T
Sbjct: 2   EFSINPSTLKMIRTSFCILVVLAISSFSM--MEARDLASKGKTNIEYMALNCRKHTAVLT 61

Query: 65  EFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDA 124
           EFG VGDG+TSNTKAF+ A+ +L+  A DGG QL VP G+WLTGSFNLTSHFTLF+ + A
Sbjct: 62  EFGAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGA 121

Query: 125 VLLASQ 131
            +LASQ
Sbjct: 122 TILASQ 125

[Close]
BLAST of CmaCh00G006770 vs. TAIR10
Match: AT4G23500.1 (AT4G23500.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 8.7e-29
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1 

Query: 50  EYGAISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGS 109
           EY AISCRA++AS+ EFG VGDG TSNT AF+ AV +LS++A  GG+ L+VPAGRWLTG+
Sbjct: 57  EYSAISCRAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGN 116

Query: 110 FNLTSHFTLFLHQDAVLLASQ 131
           FNLTSHFTLFLH+DAV+LASQ
Sbjct: 117 FNLTSHFTLFLHRDAVILASQ 137

[Close]
BLAST of CmaCh00G006770 vs. TAIR10
Match: AT3G48950.1 (AT3G48950.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1 

Query: 16  VKMTFLVLVLAAAAAALMGEVEGRKARILEDNGIEYGAISCRAHTASITEFGGVGDGETS 75
           ++ TF +LV  A    L   +E R  R    + IE+ A++CR H+A +T+FG VGDG+TS
Sbjct: 2   IRPTFGLLVFLAIF--LFPAIESRSHRNSVTSKIEFSALNCRKHSAILTDFGAVGDGKTS 61

Query: 76  NTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAVLLASQ 131
           NTKAF+ A+ +LSQ A DGGAQL VP G+WLTGSFNLTSHFTLF+ + A +LASQ
Sbjct: 62  NTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQRGATILASQ 114

[Close]
BLAST of CmaCh00G006770 vs. TAIR10
Match: AT5G49215.1 (AT5G49215.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 57  RAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHF 116
           R H+  IT+FG VGDG+T NT AFQ AV  L  +A  GGAQLYVP GRWLTGSFNLTSH 
Sbjct: 39  RPHSVKITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHL 98

Query: 117 TLFLHQDAVLLASQ 131
           TLFL +DAV+LASQ
Sbjct: 99  TLFLEKDAVILASQ 112

[Close]
BLAST of CmaCh00G006770 vs. NCBI nr
Match: gi|659075180|ref|XP_008438007.1| (PREDICTED: probable polygalacturonase [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MPMEELCKNPIKADAVKMTFLVLVLAAAAAALMGEVEGR--------KARILEDNGIEYG 60
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGR        KA+ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIMAAA---LMDEVEGRRGKVKKGKKAKILEGNGIEYG 60

Query: 61  AISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 120
           AI+CRAHTASITEFGGVGDG TSNTKAFQAAVERL QYA DGGAQLYVPAGRWLTGSFNL
Sbjct: 61  AINCRAHTASITEFGGVGDGVTSNTKAFQAAVERLGQYANDGGAQLYVPAGRWLTGSFNL 120

Query: 121 TSHFTLFLHQDAVLLASQ 131
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of CmaCh00G006770 vs. NCBI nr
Match: gi|449432134|ref|XP_004133855.1| (PREDICTED: probable polygalacturonase [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 7.2e-49
Identity = 108/138 (78.26%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MPMEELCKNPIKADAVKMTFLVLVLAAAAAALMGEVEGRK--------ARILEDNGIEYG 60
           MPME+L KNPIKA  +KM  L +++AAA   LM EVEGRK        A+ILE NGIEYG
Sbjct: 1   MPMEKLYKNPIKAQVMKMVILGVIVAAA---LMDEVEGRKGKVKKGKKAKILEGNGIEYG 60

Query: 61  AISCRAHTASITEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNL 120
           AISCRAHTASITEFGGVGDG TSNTKAFQAAVE+LSQY  DGGAQLYVPAG+WLTGSFNL
Sbjct: 61  AISCRAHTASITEFGGVGDGVTSNTKAFQAAVEQLSQYTDDGGAQLYVPAGKWLTGSFNL 120

Query: 121 TSHFTLFLHQDAVLLASQ 131
           TSHFTLFLHQDAVLLASQ
Sbjct: 121 TSHFTLFLHQDAVLLASQ 135

[Close]
BLAST of CmaCh00G006770 vs. NCBI nr
Match: gi|970029736|ref|XP_015076181.1| (PREDICTED: probable polygalacturonase [Solanum pennellii])

HSP 1 Score: 166.0 bits (419), Expect = 4.4e-38
Identity = 83/126 (65.87%), Postives = 103/126 (81.75%), Query Frame = 1 

Query: 8   KNPIKADAVKMTFLVLVLAAAAAALMGEVEGRKARILEDNG---IEYGAISCRAHTASIT 67
           K P+ +   K ++L++V+     +L+G  EGRK+RIL+++    +EY AISCRAH+ASIT
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASIT 62

Query: 68  EFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDA 127
           +FGGVGDG+T NTKAFQ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+DA
Sbjct: 63  DFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKDA 122

Query: 128 VLLASQ 131
           +LLASQ
Sbjct: 123 ILLASQ 128

[Close]
BLAST of CmaCh00G006770 vs. NCBI nr
Match: gi|460388891|ref|XP_004240097.1| (PREDICTED: probable polygalacturonase [Solanum lycopersicum])

HSP 1 Score: 163.7 bits (413), Expect = 2.2e-37
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1 

Query: 8   KNPIKADAVKMTFL-VLVLAAAAAALMGEVEGRKARILEDNG---IEYGAISCRAHTASI 67
           K P+ +   K ++L V+VL     +L+G  EGRK+RIL+++    +EY AISCRAH+ASI
Sbjct: 3   KIPLSSQMEKTSWLLVVVLGMVVISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASI 62

Query: 68  TEFGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQD 127
           T+FGGVGDG+T NTKAFQ AV RLSQYA DGGAQL VPAG+WLTGSFNLTSHFTLFLH+D
Sbjct: 63  TDFGGVGDGKTLNTKAFQEAVNRLSQYASDGGAQLIVPAGQWLTGSFNLTSHFTLFLHKD 122

Query: 128 AVLLASQ 131
           A+LLASQ
Sbjct: 123 AILLASQ 129

[Close]
BLAST of CmaCh00G006770 vs. NCBI nr
Match: gi|971547390|ref|XP_006345582.2| (PREDICTED: probable polygalacturonase isoform X1 [Solanum tuberosum])

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-35
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 1 

Query: 10  PIKADAVKMTFLVLVLAAAAA-ALMGEVEGRKARILEDNG---IEYGAISCRAHTASITE 69
           P+ +   K ++L++VL      +L+G  EGRK+RIL+++    +EY AISCRAH+ASIT+
Sbjct: 5   PLSSQMEKTSWLLVVLVGVVLISLLGGAEGRKSRILDESSYYDLEYSAISCRAHSASITD 64

Query: 70  FGGVGDGETSNTKAFQAAVERLSQYAGDGGAQLYVPAGRWLTGSFNLTSHFTLFLHQDAV 129
           FGGVGDG+T NTKAFQ AV +LS+YA DGG+QL VPAG+WLTGSFNLTSHFTLFLH+DAV
Sbjct: 65  FGGVGDGKTLNTKAFQEAVNQLSKYASDGGSQLIVPAGQWLTGSFNLTSHFTLFLHKDAV 124

Query: 130 LLASQ 131
           LLASQ
Sbjct: 125 LLASQ 129

The following BLAST results are available for this feature:
BLAST of CmaCh00G006770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_VITVI3.2e-3368.47Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1[more]
BLAST of CmaCh00G006770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8V4_CUCSA5.0e-4978.26Uncharacterized protein OS=Cucumis sativus GN=Csa_3G121720 PE=3 SV=1[more]
K4C131_SOLLC1.5e-3766.93Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1[more]
A0A068VI29_COFCA1.8e-3572.73Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008903001 PE=3 SV=1[more]
M1BYH4_SOLTU2.4e-3569.03Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=4 SV=1[more]
M1BYH5_SOLTU2.4e-3569.03Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021658 PE=3 SV=1[more]
BLAST of CmaCh00G006770 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61490.15.9e-3377.78 Pectin lyase-like superfamily protein[more]
AT2G23900.15.1e-2951.59 Pectin lyase-like superfamily protein[more]
AT4G23500.18.7e-2972.84 Pectin lyase-like superfamily protein[more]
AT3G48950.11.5e-2855.65 Pectin lyase-like superfamily protein[more]
AT5G49215.11.9e-2370.27 Pectin lyase-like superfamily protein[more]
BLAST of CmaCh00G006770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075180|ref|XP_008438007.1|1.4e-4978.99PREDICTED: probable polygalacturonase [Cucumis melo][more]
gi|449432134|ref|XP_004133855.1|7.2e-4978.26PREDICTED: probable polygalacturonase [Cucumis sativus][more]
gi|970029736|ref|XP_015076181.1|4.4e-3865.87PREDICTED: probable polygalacturonase [Solanum pennellii][more]
gi|460388891|ref|XP_004240097.1|2.2e-3766.93PREDICTED: probable polygalacturonase [Solanum lycopersicum][more]
gi|971547390|ref|XP_006345582.2|1.2e-3564.80PREDICTED: probable polygalacturonase isoform X1 [Solanum tuberosum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G006770.1CmaCh00G006770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 17..129
score: 4.57
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 21..129
score: 3.1
NoneNo IPR availablePANTHERPTHR31339FAMILY NOT NAMEDcoord: 49..130
score: 2.1
NoneNo IPR availablePANTHERPTHR31339:SF7POLYGALACTURONASE-RELATEDcoord: 49..130
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G006770Melon (DHL92) v3.6.1cmamedB005
CmaCh00G006770Silver-seed gourdcarcmaB1319
CmaCh00G006770Cucumber (Chinese Long) v3cmacucB0003
CmaCh00G006770Watermelon (97103) v2cmawmbB005
CmaCh00G006770Cucumber (Gy14) v1cgycmaB0708
CmaCh00G006770Cucurbita moschata (Rifu)cmacmoB013
CmaCh00G006770Cucurbita moschata (Rifu)cmacmoB018
CmaCh00G006770Cucurbita pepo (Zucchini)cmacpeB021
CmaCh00G006770Bottle gourd (USVL1VR-Ls)cmalsiB007
CmaCh00G006770Cucumber (Gy14) v2cgybcmaB278