CmaCh00G005900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr00 : 42606018 .. 42606572 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCGTTGCCTCCCGGACCCGACTTTCCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCGGAACCGGACATATTGCCTCCGCCGCCACCGGAGTTTCCGCCTCCGAGGCCTCCCGGTCCGGAGATATTCACGTCACCATCTTCCCCTGACATTCCTCCGGTAGCTATGTTTTGA

mRNA sequence

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCGTTGCCTCCCGGACCCGACTTTCCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCGGAACCGGACATATTGCCTCCGCCGCCACCGGAGTTTCCGCCTCCGAGGCCTCCCGGTCCGGAGATATTCACGTCACCATCTTCCCCTGACATTCCTCCGGTAGCTATGTTTTGA

Coding sequence (CDS)

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCGTTGCCTCCCGGACCCGACTTTCCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCGGAACCGGACATATTGCCTCCGCCGCCACCGGAGTTTCCGCCTCCGAGGCCTCCCGGTCCGGAGATATTCACGTCACCATCTTCCCCTGACATTCCTCCGGTAGCTATGTTTTGA

Protein sequence

MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEIFTSPSSPDIPPVAMF
Homology
[Close]
BLAST of CmaCh00G005900 vs. TrEMBL
Match: A0A0A0L4M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.9e-43
Identity = 123/184 (66.85%), Postives = 132/184 (71.74%), Query Frame = 1 

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFL-SHGEFLPFKN-SAPLSRFLLVGDSP 60
           MS TS FSFTLIRKTLP YY  SS  N  I  FL SH +FLPF    A LS  LL GDSP
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSS--NFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSP 64

Query: 61  EFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVPP 120
           EFP+  P+P PS PLEIPQ S  PEIDP TP ELP ITP P+FP    P PPGP+FP PP
Sbjct: 65  EFPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPP 124

Query: 121 VPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEIFTS 177
           +PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEI TS
Sbjct: 125 LPSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTS 182

[Close]
BLAST of CmaCh00G005900 vs. TrEMBL
Match: A0A166H4D3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-07
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1 

Query: 46  APLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPIT---PGPDFP 105
           A  +R +  G  PEFP+K  I +P  P E+P     P+  P+ P E P  +    GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 106 GLPSPLPPGPDFPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 165
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 166 RPPGPEIFT 172
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

[Close]
BLAST of CmaCh00G005900 vs. TrEMBL
Match: B9RTH9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0910720 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 67/182 (36.81%), Postives = 93/182 (51.10%), Query Frame = 1 

Query: 6   PFSFTLIRKTLPIYYSSSSSSNLVI--------PSFLSHGEFLPFKNSAPLSRFLLVGDS 65
           P++  + +  LP   S+     ++         P+ +S G  LP      +   +   + 
Sbjct: 25  PYAIAIKKTNLPCISSAIPKKKILNGDNTLPHKPNLMSFGPNLPQVPEQTIPSEIPENNP 84

Query: 66  PEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVP 125
           PEFP+      PS+PLE+PQ    PEI+   PPE+  IT  P+ P +P+   PGPD+PVP
Sbjct: 85  PEFPRNPDESPPSIPLEVPQFPKVPEIE-TAPPEV--ITEPPNIPEIPT---PGPDYPVP 144

Query: 126 PVPSPPG-IDVPIPPHKPPDIEPPR--PGSPVPEPDILPP---PPPEFPPPRPPGPEIFT 174
           P P+PP   DVP+PP   P  +PP   P    P+PDILPP   PPP+  PP    PEI  
Sbjct: 145 PQPTPPAPPDVPLPPPGAPRPQPPNRLPPRLPPDPDILPPPTYPPPDIQPPPDVPPEIRP 200

[Close]
BLAST of CmaCh00G005900 vs. NCBI nr
Match: gi|700201797|gb|KGN56930.1| (hypothetical protein Csa_3G144200 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 123/184 (66.85%), Postives = 132/184 (71.74%), Query Frame = 1 

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFL-SHGEFLPFKN-SAPLSRFLLVGDSP 60
           MS TS FSFTLIRKTLP YY  SS  N  I  FL SH +FLPF    A LS  LL GDSP
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSS--NFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSP 64

Query: 61  EFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPITPGPDFPGLPSPLPPGPDFPVPP 120
           EFP+  P+P PS PLEIPQ S  PEIDP TP ELP ITP P+FP    P PPGP+FP PP
Sbjct: 65  EFPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPP 124

Query: 121 VPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEIFTS 177
           +PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEI TS
Sbjct: 125 LPSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTS 182

[Close]
BLAST of CmaCh00G005900 vs. NCBI nr
Match: gi|645235327|ref|XP_008224213.1| (PREDICTED: vegetative cell wall protein gp1 [Prunus mume])

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 81/194 (41.75%), Postives = 106/194 (54.64%), Query Frame = 1 

Query: 2   SCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPE-- 61
           S  S FS TLIR+T+P   S++S+++     FLS       K   PL+  +L    P+  
Sbjct: 4   SSISSFSSTLIRRTIPFCSSTTSTTSATSSQFLSPKR----KPICPLAYHILARALPDPP 63

Query: 62  --FPQKSP------IP----EPSVPLEIPQISTSPEIDP--ITPPELPPITPGPDFPGLP 121
             +P KSP      +P    +PS P E+P ISTSP++DP  + PPE+ P  P  D    P
Sbjct: 64  DQYPTKSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTSVPPPEVNPYPPPVD----P 123

Query: 122 SPLPPGPDFPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP 180
            P  P PDFPVPP+  PP           PDI PP P +P+P+PD  PP PP+  PP PP
Sbjct: 124 DP-NPAPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDQEPPQPPDIVPPPPP 178

[Close]
BLAST of CmaCh00G005900 vs. NCBI nr
Match: gi|694418606|ref|XP_009337298.1| (PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri])

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 62/130 (47.69%), Postives = 72/130 (55.38%), Query Frame = 1 

Query: 58  PEFPQKSP--IPEPSVPLEIPQISTSPEIDPIT--PPEL----PPITPGPDFPGLPSPLP 117
           PEF    P    +PS P  +P ISTSPE+DP T  PPE+    PP+ PGP+         
Sbjct: 57  PEFSPSVPGRYNQPSTPPGVPGISTSPEVDPTTTIPPEVRPYPPPLEPGPN--------- 116

Query: 118 PGPDFPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEI 177
           PGPDFPVPP+  PP           PDI PP P +P+P P ILPP PPE  PP PP PEI
Sbjct: 117 PGPDFPVPPLNPPP----------LPDIPPPFPDNPLPNPGILPPRPPEVVPPPPPSPEI 167

Query: 178 FTSPSSPDIP 180
              P+ P  P
Sbjct: 177 IPPPAPPPPP 167

[Close]
BLAST of CmaCh00G005900 vs. NCBI nr
Match: gi|1021051926|gb|KZN09704.1| (hypothetical protein DCAR_002360 [Daucus carota subsp. sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 1 

Query: 46  APLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPIT---PGPDFP 105
           A  +R +  G  PEFP+K  I +P  P E+P     P+  P+ P E P  +    GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 106 GLPSPLPPGPDFPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 165
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 166 RPPGPEIFT 172
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

[Close]
BLAST of CmaCh00G005900 vs. NCBI nr
Match: gi|698529722|ref|XP_009761679.1| (PREDICTED: proline-rich protein 2-like [Nicotiana sylvestris])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 77/205 (37.56%), Postives = 103/205 (50.24%), Query Frame = 1 

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
           MS     S +L++KT+P+ +S+  ++ L++ +F  +G  L   ++   +R          
Sbjct: 1   MSYVLAISQSLLKKTIPLNHSTLFTAPLMVKTFKINGPNLTSVSAQMRAR---------- 60

Query: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITP------PELPPITPGPDFPGLPSPLPPG--- 120
                  +PSVP E+PQ    PE DPI P      P L P +PGP FPGLP+PLPPG   
Sbjct: 61  ------QQPSVPPEMPQTPNVPEFDPIPPEKPAEKPPLSPPSPGPGFPGLPNPLPPGHDP 120

Query: 121 --PDFPVPPVP-SPPGIDVPIPPHKP-------PDIEPPRPGSPVPE--PDILPPPPPEF 180
             PD P PP   SPPG  V IPP  P       PD+ PP P   VP   PD++PP  PE 
Sbjct: 121 SGPDMPEPPPEISPPGGPVVIPPAIPEIVPPGGPDVIPPGPPEIVPPGGPDVIPPKLPEP 180

Query: 181 PPPRPPGPEIFTSPSSPDIPPVAMF 185
            PP P  P+I        +PP+  F
Sbjct: 181 GPPHPSLPDI--------LPPIITF 181

The following BLAST results are available for this feature:
BLAST of CmaCh00G005900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4M0_CUCSA9.9e-4366.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1[more]
A0A166H4D3_DAUCA8.7e-0742.64Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1[more]
B9RTH9_RICCO3.3e-0636.81Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0910720 PE=4 SV=1[more]
BLAST of CmaCh00G005900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201797|gb|KGN56930.1|1.4e-4266.85hypothetical protein Csa_3G144200 [Cucumis sativus][more]
gi|645235327|ref|XP_008224213.1|1.3e-1141.75PREDICTED: vegetative cell wall protein gp1 [Prunus mume][more]
gi|694418606|ref|XP_009337298.1|8.7e-0847.69PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri][more]
gi|1021051926|gb|KZN09704.1|1.3e-0642.64hypothetical protein DCAR_002360 [Daucus carota subsp. sativus][more]
gi|698529722|ref|XP_009761679.1|1.3e-0637.56PREDICTED: proline-rich protein 2-like [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005900.1CmaCh00G005900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 105..121
score: 1.8E-9coord: 122..139
score: 1.8E-9coord: 58..70
score: 1.8E-9coord: 81..102
score: 1.8E-9coord: 140..165
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G005900Melon (DHL92) v3.5.1cmameB009
CmaCh00G005900Watermelon (Charleston Gray)cmawcgB006
CmaCh00G005900Cucurbita pepo (Zucchini)cmacpeB014
CmaCh00G005900Cucurbita maxima (Rimu)cmacmaB023
CmaCh00G005900Cucurbita moschata (Rifu)cmacmoB026