CmaCh00G005630 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSenescence-associated protein, putative
LocationCma_Chr00 : 40194606 .. 40196600 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGNCGCGCGGGGGCAAGCGGGCGGGACGCACGCGAGTGGGGCAGGGCGGGGCTGGCCAGAGCGCGGGAACGTTCCGACACTGCCCCACCGTGCGCGTTCCGCCACCGCACCACTGCCGTCAACCGCCCTCAACCTCCGACCACCACCTCGACGACCCGAGCATATGCCCATGTGCGGCGCATAGTGCTTGGGGCGTGGGGGTGGCGGAGGATATAGGGGGCGCCCCCGTGGCCAGCCCTTGCAGACTAGTCACCCCCCTATATAGTACATTTTGAGGCATTTTTGGTCTGCCAGGCCCAGACACGATTTTTCTGAGCCGTCATACGGTCGAATATCTCGAGTTTTACAATGTTTTTTTCCGGGAACTCGATTGATTCATGAATGGGACATTCTCATGGATCAATAAATCAAGTTTCATGACTTTTCAACCGACCAATTTTTTTTAATGAATTTTTCAACATTAAATAATGCGAAATTAGAAAAAAATAGCTACAGCCGTCAAAAAAATCTGAAATTTTGTGGGAATATTCTTTCATCTTGCTTATCTCCCAGGAAAAAAATTACAGCAAACCGATCACTCCACACGTACTTTCGCAATTAATGGGTGATGGTTGTAAGCACAAGGTCATGGTGTAGTGTACTTGCTGTAGAAATTTTGTGGGAATCATTCTTCCATCTTGCTTAGCTCCCAAGAAAAAAATTACGGCAAACCGACCACTCCACACGTACTTTCGCAATTAATGGGTGATGGTTGTAAGCACAAGGTCATGGTGGACGTCTTGGTGTAACGTACTTGCTCCGGTATGAAAACTCTTCATTTTAATGTTTGAGATAAGCATTCTTTCGCTGCCACATCATTGGGTGTGATGTTTTTTTTGTTTTTTAATGGAGGTAAAATCCAACACTTTCGATATGCTGTTGGTAGGACACGTATCGCGCGCAGCGTAGGATGGGGCTCGGCGTGTGCGAGGGGAGTGCACGGGGGTAGCGCGCGCGGGTTAACCTCCAAGGGTTTTGGATGTCTTTGATTATTCATAGCGGTTAAGCTGTGAAAGGGTTTTGTGGCTTTGCAGTGGGCATGCAGACAAGGGGCGCGAGCGTGGACTTGTTAGTTGGGCAGGTGCTGGCGGGCATGATGTGCGCGCAAGGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGCGGGCATGATGTGCGCGCAAGGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGAGCACTGGCGCCCCACGATTGCCGGCCGTAGGCCTTGGCGGGCACGCGAGCGCCCAACCCGTGCTCCCACACGCCCACCCCTGCGTCCTTCTCACCAACACCCAAACCCCCACCACCCCAACTCACGCATGCATCTTCGATGGCCTTGCATTGGAGGAGCACGTCCAGTCATCAAACACTTGCACTGGAGTAGAATCACTACTTTTTCCGATAGCCTCCACGACACTTGGCAGAAATAAATTGGTTTGTTGCGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCTTGGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

mRNA sequence

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGNCGCGCGGGGGCAAGCGGGCGGGACGCACGCGAGTGGGGCAGGGCGGGGCTGGCCAGAGCGCGGGAACGTTCCGACACTGCCCCACCGTGCGCGTTCCGCCACCGCACCACTGCCGTCAACCGCCCTCAACCTCCGACCACCACCTCGACGACCCGAGCATATGCCCATGTAAAATCCAACACTTTCGATATGCTGTTGGTAGGACACGTATCGCGCGCAGCGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGCGGGCATGATGTGCGCGCAAGGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGAGCACTGGCGCCCCACGATTGCCGGCCGTAGGCCTTGGCGGGCACGCGAGCGCCCAACCCGTGCTCCCACACGCCCACCCCTGCGTCCTTCTCACCAACACCCAAACCCCCACCACCCCAACTCACGCATGCATCTTCGATGGCCTTGCATTGGAGGAGCACGTCCAGTCATCAAACACTTGCACTGGAGTAGAATCACTACTTTTTCCGATAGCCTCCACGACACTTGGCAGAAATAAATTGGTTTGTTGCGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCTTGGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Coding sequence (CDS)

ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGNCGCGCGGGGGCAAGCGGGCGGGACGCACGCGAGTGGGGCAGGGCGGGGCTGGCCAGAGCGCGGGAACGTTCCGACACTGCCCCACCGTGCGCGTTCCGCCACCGCACCACTGCCGTCAACCGCCCTCAACCTCCGACCACCACCTCGACGACCCGAGCATATGCCCATGTAAAATCCAACACTTTCGATATGCTGTTGGTAGGACACGTATCGCGCGCAGCGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGGGCACTGGCGCCCCACGATTGCCGGTGTTGGCGGGCATGATGTGCGCGCAAGGGCGATGGGGGCGCTGCTGCGGCGTGGGGCTCGGCGCGCGCACGAGGGGGCGAGCACTGGCGCCCCACGATTGCCGGCCGTAGGCCTTGGCGGGCACGCGAGCGCCCAACCCGTGCTCCCACACGCCCACCCCTGCGTCCTTCTCACCAACACCCAAACCCCCACCACCCCAACTCACGCATGCATCTTCGATGGCCTTGCATTGGAGGAGCACGTCCAGTCATCAAACACTTGCACTGGAGTAGAATCACTACTTTTTCCGATAGCCTCCACGACACTTGGCAGAAATAAATTGGTTTGTTGCGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGGAATTACGTTACAAGGCAGCCCCTGAGACTCATCCGTCGCAGGGGCTTGGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGACGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Protein sequence

MIGRADIEGSKSNVAMNAWLXRGGKRAGRTRVGQGGAGQSAGTFRHCPTVRVPPPHHCRQPPSTSDHHLDDPSICPCKIQHFRYAVGRTRIARSGDGGAAAAWGSARARGGGHWRPTIAGVGGHDVRARAMGALLRRGARRAHEGASTGAPRLPAVGLGGHASAQPVLPHAHPCVLLTNTQTPTTPTHACIFDGLALEEHVQSSNTCTGVESLLFPIASTTLGRNKLVCCVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGLGQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Homology
[Close]
BLAST of CmaCh00G005630 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.5e-42
Identity = 90/124 (72.58%), Postives = 97/124 (78.23%), Query Frame = 1 

Query: 224 RNKLVCCVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPE 283
           R  L+   G    +  RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KA+  
Sbjct: 73  RPGLLVIGGEGRIKATRAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRR 132

Query: 284 THPSQGLGQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPS 343
            +P     QRHVPLG + PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPS
Sbjct: 133 ANPPHEGHQRHVPLGGRGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPS 192

Query: 344 AMTN 348
           AMTN
Sbjct: 193 AMTN 196

[Close]
BLAST of CmaCh00G005630 vs. TrEMBL
Match: I1LXT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 240 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGLGQRHVPLGA 299
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KA+   +P     QRHVPLG 
Sbjct: 80  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 139

Query: 300 KRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 348
           + PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 140 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 187

[Close]
BLAST of CmaCh00G005630 vs. TrEMBL
Match: I1LXQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-41
Identity = 87/108 (80.56%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 240 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGLGQRHVPLGA 299
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KA+   +P     QRHVPLG 
Sbjct: 81  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 140

Query: 300 KRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 348
           + PLLLVG +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 141 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 188

[Close]
BLAST of CmaCh00G005630 vs. TrEMBL
Match: A0A0P6CHZ2_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-33
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 1 

Query: 266 QRILPVARWELRYKAAPETHPSQGLGQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEA 325
           QRILP ARWEL + AA    P +GLGQRHVPLGA+ PLL VGN+A GA VASSPDSDLEA
Sbjct: 60  QRILPAARWELYFMAAHAARPPRGLGQRHVPLGARGPLLRVGNRAAGARVASSPDSDLEA 119

Query: 326 FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 357
           FSHNPAHGSFAPLAFQPSAMT C NQRFLSY
Sbjct: 120 FSHNPAHGSFAPLAFQPSAMTKCVNQRFLSY 150

[Close]
BLAST of CmaCh00G005630 vs. TrEMBL
Match: W1PVN2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 77/127 (60.63%), Postives = 82/127 (64.57%), Query Frame = 1 

Query: 232 GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPS-QGL 291
           G DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP A+  L  K  P +  +    
Sbjct: 15  GGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSASTVVAF 74

Query: 292 GQRHVPLGAK-RPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 351
                P   + +P     N   G     S DSDLEAFSHNPAHGSFAPLAFQPSAMT C 
Sbjct: 75  TNDTSPWRVRAQPYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSFAPLAFQPSAMTICL 134

Query: 352 NQRFLSY 357
           NQ FLSY
Sbjct: 135 NQWFLSY 141

[Close]
BLAST of CmaCh00G005630 vs. NCBI nr
Match: gi|548854219|gb|ERN12143.1| (hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda])

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 77/127 (60.63%), Postives = 82/127 (64.57%), Query Frame = 1 

Query: 232 GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPS-QGL 291
           G DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP A+  L  K  P +  +    
Sbjct: 15  GGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSASTVVAF 74

Query: 292 GQRHVPLGAK-RPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCA 351
                P   + +P     N   G     S DSDLEAFSHNPAHGSFAPLAFQPSAMT C 
Sbjct: 75  TNDTSPWRVRAQPYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSFAPLAFQPSAMTICL 134

Query: 352 NQRFLSY 357
           NQ FLSY
Sbjct: 135 NQWFLSY 141

[Close]
BLAST of CmaCh00G005630 vs. NCBI nr
Match: gi|966068351|gb|KTE89979.1| (hypothetical protein AT727_24830 [Desulfitobacterium hafniense])

HSP 1 Score: 117.9 bits (294), Expect = 3.7e-23
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 297 LGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 356
           LG +RPLL VGN+ATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 13  LGGQRPLLRVGNRATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 72

[Close]
BLAST of CmaCh00G005630 vs. NCBI nr
Match: gi|954297013|gb|KRX86393.1| (hypothetical protein T12_13365, partial [Trichinella patagoniensis])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1 

Query: 297 LGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 356
           LGA RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 1   LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 60

[Close]
BLAST of CmaCh00G005630 vs. NCBI nr
Match: gi|922327141|ref|XP_013442963.1| (senescence-associated protein, putative [Medicago truncatula])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 275 ELRYKAAPETHPSQGLGQRHVPLGAKRPLLLVGNQATGACVASSPDSDLEAFSHNPAHGS 334
           +LR+K + + HP  G+ QRHVPLG + PLLLVG + TG  +ASSPDSDLEAFSHNP HGS
Sbjct: 25  KLRFKVSRKAHPPYGVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGS 84

Query: 335 FAPLAFQPSAMTNC 349
           FAPLAFQPSAMTNC
Sbjct: 85  FAPLAFQPSAMTNC 98

[Close]
BLAST of CmaCh00G005630 vs. NCBI nr
Match: gi|947015817|gb|KRG68575.1| (hypothetical protein GLYMA_U007400 [Glycine max])

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-20
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1 

Query: 240 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWELRYKAAPETHPSQGLGQRHVPLGA 299
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARWELR+KA+   +P     QRHVPLG 
Sbjct: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 104

Query: 300 KRPLLLV 307
           + PLLLV
Sbjct: 105 RGPLLLV 111

The following BLAST results are available for this feature:
BLAST of CmaCh00G005630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005630 vs. TrEMBL
Match NameE-valueIdentityDescription
I1LXS9_SOYBN9.5e-4272.58Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LXT0_SOYBN2.1e-4180.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LXQ4_SOYBN2.1e-4180.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0P6CHZ2_9CRUS6.2e-3380.22Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1[more]
W1PVN2_AMBTC2.1e-2860.63Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=... [more]
BLAST of CmaCh00G005630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548854219|gb|ERN12143.1|2.9e-2860.63hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda][more]
gi|966068351|gb|KTE89979.1|3.7e-2393.33hypothetical protein AT727_24830 [Desulfitobacterium hafniense][more]
gi|954297013|gb|KRX86393.1|1.1e-2293.33hypothetical protein T12_13365, partial [Trichinella patagoniensis][more]
gi|922327141|ref|XP_013442963.1|2.4e-2271.62senescence-associated protein, putative [Medicago truncatula][more]
gi|947015817|gb|KRG68575.1|2.3e-2077.61hypothetical protein GLYMA_U007400 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005630.1CmaCh00G005630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047FAMILY NOT NAMEDcoord: 240..347
score: 1.1
NoneNo IPR availablePANTHERPTHR33047:SF4SUBFAMILY NOT NAMEDcoord: 240..347
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G005630Watermelon (97103) v2cmawmbB012
CmaCh00G005630Cucurbita maxima (Rimu)cmacmaB023
CmaCh00G005630Cucurbita moschata (Rifu)cmacmoB026
CmaCh00G005630Melon (DHL92) v3.5.1cmameB009
CmaCh00G005630Watermelon (Charleston Gray)cmawcgB006
CmaCh00G005630Cucurbita pepo (Zucchini)cmacpeB014