CmaCh00G005170 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-ubiquinone oxidoreductase chain 3
LocationCma_Chr00 : 37653248 .. 37655013 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGATCAATGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCTGCTCCCCTCACTTTCTTTGCTGGACAGGAAGATGCGAATTGCAAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGTCGGAGAGAGAGAAGCGAATTGAAACCAGGTCTCAAATCCCTTCGGAATCGAAGGTGAAAGCAGAAAGATGCGAACTGCTAGTTTCTTTGATCCCACTCAGTCTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCTAGAGAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCTGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTCACCTTTTCTTTTCCTTGGGCAATACCTCTCAACAAAAATGATCTATTTGGATCTTGGTCTATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAGTAATCACTAGTGAGAGGGCAAAAAGAAAGAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTNNNNNNNNNNTCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCAACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTGTATACGAGGAGTCAAGGATTTGCTGGAAATTCCGGATCAAAGAAGAGGAAGATCTAAATATGGTGCAGAAAAACCTAAATCGGTATGAATGGAAGATGCCTCTTTCACTTCTTTTTCTCAGTCAGTCGAGGGAAAGGGAACAACCAACCACAATGTTACGCCCCAAAATCGAACTATACGGAGCCCTTCCGAATGACCTCTCATGAAGTCTGCTACACTAGCCAAGAAAGAGTGTATTAGACTCTATTCGCCCGTGGAGGTGAGTGGAGGAAGAATCAAAAAAGAGAAAGGTATTGCTACTAAGAAATAGTTGCTCGTTCATAAATGAAGTTGACCACTTCTTAGTCTTGCTACACTACACGACACGAGGGGTGAAGTTGAAGCAGACACAGTCTTTAGTCGACTGAACAAGTGATTCACCATATGGAAATAAGAAAAAAAGGAGAGAAGGGTCTCGCCCAGGTGGCTCCCGCAAGGTAAGGTAACAACTTAAAACTCAAACAAAGAACGTTCTTCTCCAAGGCGCATGAGTCAAAGAAAATGTTGTATCTATCTAATGCAAGACCCGTCGATAAGCTAAGGCTACGAGCGGATCATTAGGTCCGCCCGGTTGGGCTCAACCTCAGAGAATTGAGTGAACAGGAAAGGGAAGACGCCGGCTAATCTCTTCCAAGGAGTATCGGGGGGTGGAACGGCAAATGAACCTTTTTGAGGCTCGGGCTGAAGAGCTAAAGCAAAAGGCCGCTGAGCTCGTTCATCCTCGTTCCATTCCAGTGGATGAAGAGTCAGATGTGGGGCTGGCAATCAATCTTCTCTTGGAGAAGAAGAGAGAGAGACAACCTCAGATTCCTCCCCAGGGCGATGAAGGCGATTGA

mRNA sequence

ATGGCATGGATCAATGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCTGCTCCCCTCACTTTCTTTGCTGGACAGGAAGATGCGAATTGCAAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGTCGGAGAGAGAGAAGCGAATTGAAACCAGGTCTCAAATCCCTTCGGAATCGAAGGTGAAAGCAGAAAGATGCGAACTGCTAGTTTCTTTGATCCCACTCAGTCTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCTAGAGAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCTGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTCACCTTTTCTTTTCCTTGGGCAATACCTCTCAACAAAAATGATCTATTTGGATCTTGGTCTATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTNNNNNNNNNNTCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCAACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGAAAGGGAAGACGCCGGCTAATCTCTTCCAAGGAGTATCGGGGGGTGGAACGGCAAATGAACCTTTTTGAGGCTCGGGCTGAAGAGCTAAAGCAAAAGGCCGCTGAGCTCGTTCATCCTCGTTCCATTCCAGTGGATGAAGAGTCAGATGTGGGGCTGGCAATCAATCTTCTCTTGGAGAAGAAGAGAGAGAGACAACCTCAGATTCCTCCCCAGGGCGATGAAGGCGATTGA

Coding sequence (CDS)

ATGGCATGGATCAATGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCTGCTCCCCTCACTTTCTTTGCTGGACAGGAAGATGCGAATTGCAAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGTCGGAGAGAGAGAAGCGAATTGAAACCAGGTCTCAAATCCCTTCGGAATCGAAGGTGAAAGCAGAAAGATGCGAACTGCTAGTTTCTTTGATCCCACTCAGTCTTCCTTTTCCATTTGCTTCCAATAGTTCAACCTATCTAGAGAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCTGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTCACCTTTTCTTTTCCTTGGGCAATACCTCTCAACAAAAATGATCTATTTGGATCTTGGTCTATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTNNNNNNNNNNTCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCAACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAGGTAGAGTGAAAGATTCGCCAGGAAAGGGAAGACGCCGGCTAATCTCTTCCAAGGAGTATCGGGGGGTGGAACGGCAAATGAACCTTTTTGAGGCTCGGGCTGAAGAGCTAAAGCAAAAGGCCGCTGAGCTCGTTCATCCTCGTTCCATTCCAGTGGATGAAGAGTCAGATGTGGGGCTGGCAATCAATCTTCTCTTGGAGAAGAAGAGAGAGAGACAACCTCAGATTCCTCCCCAGGGCGATGAAGGCGATTGA

Protein sequence

MAWINAVLQRPPTCCLLPSLSLLDRKMRIAKAFPPREVQTSSEREKRIETRSQIPSESKVKAERCELLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDREEEKRRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGKGRRRLISSKEYRGVERQMNLFEARAEELKQKAAELVHPRSIPVDEESDVGLAINLLLEKKRERQPQIPPQGDEGD
Homology
[Close]
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match: NU3M_PANGI (NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng GN=ND3 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-46
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLIPL +PFPFASNSSTY +KLSAYECGFDPSGDARSRFDIRFYLVSILFII DPEV
Sbjct: 15  LLVSLIPLGVPFPFASNSSTYPDKLSAYECGFDPSGDARSRFDIRFYLVSILFIIPDPEV 74

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TFSFPWA+P NK D FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 75  TFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match: NU3M_BRANA (NADH-ubiquinone oxidoreductase chain 3 OS=Brassica napus GN=ND3 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-43
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L +PF FASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILF+I D EV
Sbjct: 16  LLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEV 75

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+ LNK DLFG WSMMAFLFILTIGFLYEWKRGALD E
Sbjct: 76  TFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119

[Close]
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match: NU3M_RAPSA (NADH-ubiquinone oxidoreductase chain 3 OS=Raphanus sativus GN=ND3 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-43
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L +PF FASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILF+I D EV
Sbjct: 16  LLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEV 75

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+ LNK DLFG WSMMAFLFILTIGFLYEWKRGALD E
Sbjct: 76  TFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119

[Close]
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match: NU3M_ARATH (NADH-ubiquinone oxidoreductase chain 3 OS=Arabidopsis thaliana GN=ND3 PE=2 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-43
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L +PF FASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILF+I D EV
Sbjct: 16  LLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFLIFDLEV 75

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+ LNK DLFG WSMMAFLFILTIGFLYEWKRGALD E
Sbjct: 76  TFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE 119

[Close]
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match: NU3M_ALLCE (NADH-ubiquinone oxidoreductase chain 3 OS=Allium cepa GN=ND3 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-43
Identity = 90/104 (86.54%), Postives = 91/104 (87.50%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L LPF FASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILFII D EV
Sbjct: 15  LLVSLILLGLPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEV 74

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+ LNK DLFG WSMMAFL ILTIGFLYEWKRGALD E
Sbjct: 75  TFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118

[Close]
BLAST of CmaCh00G005170 vs. TrEMBL
Match: A0A072TTI0_MEDTR (NADH-ubiquinone oxidoreductase chain 3 OS=Medicago truncatula GN=MTR_0082s0040 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.1e-74
Identity = 165/252 (65.48%), Postives = 175/252 (69.44%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L LPFPFASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILFII DPEV
Sbjct: 131 LLVSLILLGLPFPFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEV 190

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGA---------------LDREE 186
           TFSFPWA+P NK D FGSWSMMAFL ILTIG LYEWKRG                    E
Sbjct: 191 TFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGGGRTKERAMPTLNQLIRHGRE 250

Query: 187 EKRRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQHD 246
           EKRRTDRTRASDQCPQKQGV            P  F    +KPNSA RKIAKVRLSN+HD
Sbjct: 251 EKRRTDRTRASDQCPQKQGV-----------RPRVFKRTPKKPNSAQRKIAKVRLSNRHD 310

Query: 247 IFAHIPGEGHNLQEHSMVLIRGGRVKDSPGKGRRRLISSKEYRGVERQMNLFEARAEELK 304
           IFAHIPGEGHN QEHS VLIRGGRVKD PG      + S   RGV+  + + + R    K
Sbjct: 311 IFAHIPGEGHNSQEHSTVLIRGGRVKDLPG------VKSHCIRGVKDLLGIPDRRRGRSK 362

[Close]
BLAST of CmaCh00G005170 vs. TrEMBL
Match: G3EU38_CUCME (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo GN=nad3 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPFASNS+TY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGLPFPFASNSATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK DLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. TrEMBL
Match: G3EIY2_CUCSA (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis sativus GN=nad3 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPF+SNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK DLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. TrEMBL
Match: A0A142BZ04_ZIZJJ (NADH-ubiquinone oxidoreductase chain 3 OS=Ziziphus jujuba GN=nad3 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.0e-46
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL +PFPFASNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK D FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. TrEMBL
Match: A0A0D5CRP4_CALPC (NADH-ubiquinone oxidoreductase chain 3 OS=Calotropis procera GN=nad3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPF+SNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFII DPEVT
Sbjct: 16  LVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIIPDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK D FGSWSMMAFL ILTIG LYEWKRGALDRE
Sbjct: 76  FSFPWALPLNKIDPFGSWSMMAFLLILTIGSLYEWKRGALDRE 118

[Close]
BLAST of CmaCh00G005170 vs. TAIR10
Match: AT2G07751.1 (AT2G07751.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-46
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L +PFPFASNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILF+I D EV
Sbjct: 15  LLVSLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFLIPDLEV 74

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+P NK DLFG WSMMAFLFILTIGFLYEWKRGA DRE
Sbjct: 75  TFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. TAIR10
Match: ATMG00990.1 (ATMG00990.1 NADH dehydrogenase 3)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-46
Identity = 91/104 (87.50%), Postives = 94/104 (90.38%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L +PFPFASNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILF+I D EV
Sbjct: 16  LLVSLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFLIPDLEV 75

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           TF FPWA+P NK DLFG WSMMAFLFILTIGFLYEWKRGA DRE
Sbjct: 76  TFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGASDRE 119

[Close]
BLAST of CmaCh00G005170 vs. TAIR10
Match: AT2G07675.1 (AT2G07675.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-28
Identity = 77/133 (57.89%), Postives = 86/133 (64.66%), Query Frame = 1 

Query: 171 EEKRRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQH 230
           EEKRRTDRTRA D+CPQK GV      P   +  P      +KPNSAPRKIAKVRLSN+H
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVC-----PRVSTRTP------KKPNSAPRKIAKVRLSNRH 72

Query: 231 DIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGKGRRRLISSKEYRGVERQMNLFEARAEEL 290
           DIFAHIPGEGHN QEHS VLIRGGRVKDSPG      + S   RGV+  M +   R    
Sbjct: 73  DIFAHIPGEGHNSQEHSTVLIRGGRVKDSPG------VKSHCIRGVKDLMGIPGRRRGRS 125

Query: 291 KQKAAELVHPRSI 304
           K  A +   P+SI
Sbjct: 133 KYGAEK---PKSI 125

[Close]
BLAST of CmaCh00G005170 vs. TAIR10
Match: ATMG00980.1 (ATMG00980.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-28
Identity = 77/133 (57.89%), Postives = 86/133 (64.66%), Query Frame = 1 

Query: 171 EEKRRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQH 230
           EEKRRTDRTRA D+CPQK GV      P   +  P      +KPNSAPRKIAKVRLSN+H
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVC-----PRVSTRTP------KKPNSAPRKIAKVRLSNRH 72

Query: 231 DIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGKGRRRLISSKEYRGVERQMNLFEARAEEL 290
           DIFAHIPGEGHN QEHS VLIRGGRVKDSPG      + S   RGV+  M +   R    
Sbjct: 73  DIFAHIPGEGHNSQEHSTVLIRGGRVKDSPG------VKSHCIRGVKDLMGIPGRRRGRS 125

Query: 291 KQKAAELVHPRSI 304
           K  A +   P+SI
Sbjct: 133 KYGAEK---PKSI 125

[Close]
BLAST of CmaCh00G005170 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 

Query: 174 RRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQHDIF 233
           R   ++ A   CPQ++G      +     TP       +KPNSA RK+A+VRL++  +I 
Sbjct: 16  RNVTKSPALRGCPQRRGTCTRVYT----ITP-------KKPNSALRKVARVRLTSGFEIT 75

Query: 234 AHIPGEGHNLQEHSMVLIRGGRVKDSPG 262
           A+IPG GHNLQEHS+VL+RGGRVKD PG
Sbjct: 76  AYIPGIGHNLQEHSVVLVRGGRVKDLPG 92

[Close]
BLAST of CmaCh00G005170 vs. NCBI nr
Match: gi|922326855|ref|XP_013442820.1| (ribosomal protein S12C [Medicago truncatula])

HSP 1 Score: 287.0 bits (733), Expect = 4.4e-74
Identity = 165/252 (65.48%), Postives = 175/252 (69.44%), Query Frame = 1 

Query: 67  LLVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEV 126
           LLVSLI L LPFPFASNSSTY EKLSAYECGFDP GDARSRFDIRFYLVSILFII DPEV
Sbjct: 131 LLVSLILLGLPFPFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEV 190

Query: 127 TFSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGA---------------LDREE 186
           TFSFPWA+P NK D FGSWSMMAFL ILTIG LYEWKRG                    E
Sbjct: 191 TFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGGGRTKERAMPTLNQLIRHGRE 250

Query: 187 EKRRTDRTRASDQCPQKQGVXXXSMSPEARSTPPSFNENTEKPNSAPRKIAKVRLSNQHD 246
           EKRRTDRTRASDQCPQKQGV            P  F    +KPNSA RKIAKVRLSN+HD
Sbjct: 251 EKRRTDRTRASDQCPQKQGV-----------RPRVFKRTPKKPNSAQRKIAKVRLSNRHD 310

Query: 247 IFAHIPGEGHNLQEHSMVLIRGGRVKDSPGKGRRRLISSKEYRGVERQMNLFEARAEELK 304
           IFAHIPGEGHN QEHS VLIRGGRVKD PG      + S   RGV+  + + + R    K
Sbjct: 311 IFAHIPGEGHNSQEHSTVLIRGGRVKDLPG------VKSHCIRGVKDLLGIPDRRRGRSK 362

[Close]
BLAST of CmaCh00G005170 vs. NCBI nr
Match: gi|345034437|gb|AEN56123.1| (NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo])

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPFASNS+TY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGLPFPFASNSATYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK DLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. NCBI nr
Match: gi|346683368|ref|YP_004849330.1| (NADH dehydrogenase subunit 3 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 96/103 (93.20%), Postives = 98/103 (95.15%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPF+SNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK DLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. NCBI nr
Match: gi|1016470804|ref|YP_009241665.1| (NADH dehydrogenase subunit 3 (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 193.0 bits (489), Expect = 8.6e-46
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL +PFPFASNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT
Sbjct: 16  LVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK D FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 76  FSFPWAVPLNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmaCh00G005170 vs. NCBI nr
Match: gi|772454976|gb|AJW82057.1| (NADH dehydrogenase subunit 3 (mitochondrion) [Calotropis procera])

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = 1 

Query: 68  LVSLIPLSLPFPFASNSSTYLEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVT 127
           LVSLIPL LPFPF+SNSSTY EKLSAYECGFDPSGDARSRFDIRFYLVSILFII DPEVT
Sbjct: 16  LVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIIPDPEVT 75

Query: 128 FSFPWAIPLNKNDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 171
           FSFPWA+PLNK D FGSWSMMAFL ILTIG LYEWKRGALDRE
Sbjct: 76  FSFPWALPLNKIDPFGSWSMMAFLLILTIGSLYEWKRGALDRE 118

The following BLAST results are available for this feature:
BLAST of CmaCh00G005170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU3M_PANGI1.7e-4688.46NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng GN=ND3 PE=3 SV=1[more]
NU3M_BRANA1.8e-4385.58NADH-ubiquinone oxidoreductase chain 3 OS=Brassica napus GN=ND3 PE=2 SV=1[more]
NU3M_RAPSA1.8e-4385.58NADH-ubiquinone oxidoreductase chain 3 OS=Raphanus sativus GN=ND3 PE=3 SV=1[more]
NU3M_ARATH1.8e-4385.58NADH-ubiquinone oxidoreductase chain 3 OS=Arabidopsis thaliana GN=ND3 PE=2 SV=2[more]
NU3M_ALLCE2.3e-4386.54NADH-ubiquinone oxidoreductase chain 3 OS=Allium cepa GN=ND3 PE=3 SV=1[more]
BLAST of CmaCh00G005170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A072TTI0_MEDTR3.1e-7465.48NADH-ubiquinone oxidoreductase chain 3 OS=Medicago truncatula GN=MTR_0082s0040 P... [more]
G3EU38_CUCME1.1e-4793.20NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo GN=nad3 PE=3 ... [more]
G3EIY2_CUCSA1.1e-4793.20NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis sativus GN=nad3 PE=3 SV=1[more]
A0A142BZ04_ZIZJJ6.0e-4691.26NADH-ubiquinone oxidoreductase chain 3 OS=Ziziphus jujuba GN=nad3 PE=3 SV=1[more]
A0A0D5CRP4_CALPC1.0e-4591.26NADH-ubiquinone oxidoreductase chain 3 OS=Calotropis procera GN=nad3 PE=3 SV=1[more]
BLAST of CmaCh00G005170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07751.11.4e-4687.50 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein[more]
ATMG00990.11.4e-4687.50ATMG00990.1 NADH dehydrogenase 3[more]
AT2G07675.16.6e-2857.89 Ribosomal protein S12/S23 family protein[more]
ATMG00980.16.6e-2857.89ATMG00980.1 Ribosomal protein S12/S23 family protein[more]
ATCG00065.11.2e-1348.86ATCG00065.1 ribosomal protein S12A[more]
BLAST of CmaCh00G005170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922326855|ref|XP_013442820.1|4.4e-7465.48ribosomal protein S12C [Medicago truncatula][more]
gi|345034437|gb|AEN56123.1|1.6e-4793.20NADH dehydrogenase subunit 3 [Cucumis melo subsp. melo][more]
gi|346683368|ref|YP_004849330.1|1.6e-4793.20NADH dehydrogenase subunit 3 [Cucumis sativus][more]
gi|1016470804|ref|YP_009241665.1|8.6e-4691.26NADH dehydrogenase subunit 3 (mitochondrion) [Ziziphus jujuba][more]
gi|772454976|gb|AJW82057.1|1.5e-4591.26NADH dehydrogenase subunit 3 (mitochondrion) [Calotropis procera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000440NADH_UbQ/plastoQ_OxRdtase_su3
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006814 sodium ion transport
biological_process GO:0006412 translation
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0070469 respiratory chain
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005170.1CmaCh00G005170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PANTHERPTHR11058NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 67..173
score: 7.5
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PFAMPF00507Oxidored_q4coord: 83..168
score: 1.4
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 162..261
score: 1.9
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 170..261
score: 1.5
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 175..262
score: 1.2
NoneNo IPR availableunknownCoilCoilcoord: 273..293
scor
NoneNo IPR availablePANTHERPTHR11058:SF11NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 67..173
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G005170Cucumber (Gy14) v1cgycmaB0707
CmaCh00G005170Cucurbita moschata (Rifu)cmacmoB012
CmaCh00G005170Cucurbita moschata (Rifu)cmacmoB017
CmaCh00G005170Wild cucumber (PI 183967)cmacpiB004
CmaCh00G005170Cucumber (Chinese Long) v2cmacuB004
CmaCh00G005170Cucurbita pepo (Zucchini)cmacpeB023
CmaCh00G005170Cucumber (Gy14) v2cgybcmaB275
CmaCh00G005170Cucumber (Gy14) v2cgybcmaB280
CmaCh00G005170Melon (DHL92) v3.6.1cmamedB002
CmaCh00G005170Silver-seed gourdcarcmaB0323
CmaCh00G005170Cucumber (Chinese Long) v3cmacucB0002
CmaCh00G005170Watermelon (97103) v2cmawmbB002
CmaCh00G005170Watermelon (97103) v2cmawmbB007
CmaCh00G005170Cucurbita maxima (Rimu)cmacmaB015