CmaCh00G005130 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G005130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ycf2 protein
Location	Cma_Chr00 : 36971926 .. 36973006 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGACTCATTCCATACGAGAAATAATCGCAGGATATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCGTGAAACTATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAACTCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTTATGTGGATTATGTGGAAAAAGCCTGTATCAATAATTATGATTTTACGTATGGACAATTCCTCAATATCTTGTTCATTCCCGACAAAATATTTTCTTTGTGCGGCGGTAAAAAAAAAACATGCTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTCACAGGTATCTAACATATTCATACCTAACGATTTTCCACAAAGTGGTGACGAAAGGTATAACTTGTACAAATCTTTCCATTTAACAATTCGATCCAATCCATTCGTTCGTCGAGCTATTTACTCGATCGCAGACATTTCTGGAACACCTCTAACAGAGGGACAAATAGTCAATTTTGAAAGAACTTATTGTCAACCTCTTTCATATATGAATCTATCTGATTCAGAGGGGAAGAACTTGCATCAGTATCTCACTTTCAATTCAAACATGGGTTTGATTCACACTCCATGTTCTGAGAAATATTTACCATCCGAAAAGAGGAAAAAACGGAGTCTTTGTCTAAAGAAATGCCTTGAGAAAGGGCAGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCAAAATGGAATCTATTCCAAACATATATGCCATGGTTCTTTACTTCGACAAGGTACAAATATCTAAATTTTCCATTTTTAGATACTTTTTCAGACCTATTGCCGATACTAAGTATAAGTAGCAGCCAAAAATTTGTATCCATTTTTCGTGATATTATGCATGGATCAGCTATATCATGGCGAATTCTTCAGAAAAAATTGTGTCTTCCAAAAATCGATCCCAAACTACCGGGGCATGACAGGTTCACCGCTGTCCAATTTCGAGTTCCGTTAAAATTACGGAAAGAAAACAACTAA

mRNA sequence

ATGATTGACTCATTCCATACGAGAAATAATCGCAGGATATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCGTGAAACTATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAACTCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTTATGTGGATTATGTGGAAAAAGCCTGTATCAATAATTATGATTTTACGTATGGACAATTCCTCAATATCTTGTTCATTCCCGACAAAATATTTTCTTTGTGCGGCGATACTATTTCACCAATCGAGTCACAGGTATCTAACATATTCATACCTAACGATTTTCCACAAAGTGGTGACGAAAGGTATAACTTGTACAAATCTTTCCATTTAACAATTCGATCCAATCCATTCGTTCGTCGAGCTATTTACTCGATCGCAGACATTTCTGGAACACCTCTAACAGAGGGACAAATAGTCAATTTTGAAAGAACTTATTGTCAACCTCTTTCATATATGAATCTATCTGATTCAGAGGGGAAGAACTTGCATCAGTATCTCACTTTCAATTCAAACATGGGTTTGATTCACACTCCATGTTCTGAGAAATATTTACCATCCGAAAAGAGGAAAAAACGGAGTCTTTGTCTAAAGAAATGCCTTGAGAAAGGGCAGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCAAAATGGAATCTATTCCAAACATATATGCCATGGTTCTTTACTTCGACAAGGTACAAATATCTAAATTTTCCATTTTTAGATACTTTTTCAGACCTATTGCCGATACTAAGTATAAGTAGCAGCCAAAAATTTGTATCCATTTTTCGTGATATTATGCATGGATCAGCTATATCATGGCGAATTCTTCAGAAAAAATTGTGTCTTCCAAAAATCGATCCCAAACTACCGGGGCATGACAGGTTCACCGCTGTCCAATTTCGAGTTCCGTTAAAATTACGGAAAGAAAACAACTAA

Coding sequence (CDS)

ATGATTGACTCATTCCATACGAGAAATAATCGCAGGATATCCTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGACAATTGGCTAAATCCCGTGAAACTATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAACTCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCTTTTTATGTGGATTATGTGGAAAAAGCCTGTATCAATAATTATGATTTTACGTATGGACAATTCCTCAATATCTTGTTCATTCCCGACAAAATATTTTCTTTGTGCGGCGATACTATTTCACCAATCGAGTCACAGGTATCTAACATATTCATACCTAACGATTTTCCACAAAGTGGTGACGAAAGGTATAACTTGTACAAATCTTTCCATTTAACAATTCGATCCAATCCATTCGTTCGTCGAGCTATTTACTCGATCGCAGACATTTCTGGAACACCTCTAACAGAGGGACAAATAGTCAATTTTGAAAGAACTTATTGTCAACCTCTTTCATATATGAATCTATCTGATTCAGAGGGGAAGAACTTGCATCAGTATCTCACTTTCAATTCAAACATGGGTTTGATTCACACTCCATGTTCTGAGAAATATTTACCATCCGAAAAGAGGAAAAAACGGAGTCTTTGTCTAAAGAAATGCCTTGAGAAAGGGCAGATGTATAGAACCTTTCAACGAGATAGTGCTTTTTCAACTCTCTCAAAATGGAATCTATTCCAAACATATATGCCATGGTTCTTTACTTCGACAAGGTACAAATATCTAAATTTTCCATTTTTAGATACTTTTTCAGACCTATTGCCGATACTAAGTATAAGTAGCAGCCAAAAATTTGTATCCATTTTTCGTGATATTATGCATGGATCAGCTATATCATGGCGAATTCTTCAGAAAAAATTGTGTCTTCCAAAAATCGATCCCAAACTACCGGGGCATGACAGGTTCACCGCTGTCCAATTTCGAGTTCCGTTAAAATTACGGAAAGAAAACAACTAA

Protein sequence

MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNPHHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCGDTISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQIVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLKKCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSISSSQKFVSIFRDIMHGSAISWRILQKKLCLPKIDPKLPGHDRFTAVQFRVPLKLRKENN

Homology

[Close]

BLAST of CmaCh00G005130 vs. Swiss-Prot
Match: YCF2_CUCSA (Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 6.0e-167
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSF TRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKATRLRFLNNP
Sbjct: 678  MIDSFDTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNP 737

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 738  HHFCFYCNKRFPFYVDYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 797

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRSNPFVRRAIYSIADIS TPLTEGQ
Sbjct: 798  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQ 857

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKK+SL  K
Sbjct: 858  IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRK 917

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLLPIL  
Sbjct: 918  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLLFLDTFSDLLPIL-- 977

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSS KFVSIF DIMH S  SWRIL+KKLCLP+
Sbjct: 978  SSSPKFVSIFDDIMHRSDRSWRILRKKLCLPQ 1007

[Close]

BLAST of CmaCh00G005130 vs. Swiss-Prot
Match: YCF2_VITVI (Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 2.1e-164
Identity = 292/332 (87.95%), Postives = 297/332 (89.46%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFH+RNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 973  MIDSFHSRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1032

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            H FCFYCNKRFPFYV   EKA INN DFTYGQFLNILFI  KIFSLCG          DT
Sbjct: 1033 HRFCFYCNKRFPFYV---EKARINNSDFTYGQFLNILFIRKKIFSLCGGKKKHAFLERDT 1092

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDE YNLYKSFH  IRSNPFVRRAIYSIADISGTPLTEGQ
Sbjct: 1093 ISPIESQVSNIFIPNDFPQSGDETYNLYKSFHFPIRSNPFVRRAIYSIADISGTPLTEGQ 1152

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLC+K
Sbjct: 1153 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCIK 1212

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KC+EKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN  FLDTFSDLLPIL  
Sbjct: 1213 KCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPIL-- 1272

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSS KFVSIF DIM+GS ISWRILQKKLCLP+
Sbjct: 1273 SSSPKFVSIFHDIMYGSDISWRILQKKLCLPQ 1299

[Close]

BLAST of CmaCh00G005130 vs. Swiss-Prot
Match: YCF2_EUCGG (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 2.8e-164
Identity = 291/332 (87.65%), Postives = 299/332 (90.06%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 968  MIDSFHTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1027

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   E+A INN DFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1028 HHFCFYCNKRFPFYV---ERARINNSDFTYGQFLNILFIRNKIFSLCGGKKKYAFLERDT 1087

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDER NLYKSFH  IRS+P VRRAIYSIADISGTPLTEGQ
Sbjct: 1088 ISPIESQVSNIFIPNDFPQSGDERSNLYKSFHFAIRSDPLVRRAIYSIADISGTPLTEGQ 1147

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNL+QYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1148 IVNFERTYCQPLSDMNLSDSEGKNLYQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1207

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KC+EKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN+ FLDTFSDLLPIL  
Sbjct: 1208 KCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNWIFLDTFSDLLPIL-- 1267

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISW+ILQKK CLP+
Sbjct: 1268 SSSQKFVSIFHDIMHGSDISWQILQKKFCLPQ 1294

[Close]

BLAST of CmaCh00G005130 vs. Swiss-Prot
Match: YCF2_PANGI (Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 6.2e-164
Identity = 292/331 (88.22%), Postives = 296/331 (89.43%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFS I HDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 768  MIDSFHTRNNRRKSFDNTDSYFSTIFHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 827

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLC----------GDT 120
            HHFCFYCNKRFPFYV   EKA INN DFTYGQFLNILFI +KIFSLC           DT
Sbjct: 828  HHFCFYCNKRFPFYV---EKARINNSDFTYGQFLNILFIHNKIFSLCVGKKKHAFWGRDT 887

Query: 121  ISPIESQVSNIFIPNDFPQSG-DERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEG 180
            ISPIESQVSNIFIPNDFPQSG DE YNLYKSFH   RS+PFVRRAIYSIADISGTPLTEG
Sbjct: 888  ISPIESQVSNIFIPNDFPQSGGDETYNLYKSFHFPSRSDPFVRRAIYSIADISGTPLTEG 947

Query: 181  QIVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCL 240
            QIVNFERTYCQPLS MNLSDSEGKN HQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCL
Sbjct: 948  QIVNFERTYCQPLSDMNLSDSEGKNSHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCL 1007

Query: 241  KKCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILS 300
            KKC+EKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLNF FLDTFSDLLPILS
Sbjct: 1008 KKCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNFIFLDTFSDLLPILS 1067

Query: 301  ISSSQKFVSIFRDIMHGSAISWRILQKKLCL 321
            +SSSQKFVSIF DIMHGS ISWRILQKKLCL
Sbjct: 1068 LSSSQKFVSIFHDIMHGSDISWRILQKKLCL 1095

[Close]

BLAST of CmaCh00G005130 vs. Swiss-Prot
Match: YCF2_MORIN (Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.4e-162
Identity = 288/332 (86.75%), Postives = 294/332 (88.55%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTR NRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 975  MIDSFHTRKNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1034

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   EKA INNYDFTYGQFLNILFI +KIFSL G          DT
Sbjct: 1035 HHFCFYCNKRFPFYV---EKARINNYDFTYGQFLNILFIRNKIFSLRGGKKKYAFLERDT 1094

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIE QVSNIFIPNDFPQ+GDERYN YKSFH  IRS+PFVRRAIYSIADISGT LTEGQ
Sbjct: 1095 ISPIELQVSNIFIPNDFPQNGDERYNFYKSFHFPIRSDPFVRRAIYSIADISGTLLTEGQ 1154

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKR LCLK
Sbjct: 1155 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRGLCLK 1214

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWN+FQTYMPWF TST Y YLN  FLDTFSDLLPIL  
Sbjct: 1215 KCLEKGQMYRTFQRDSAFSTLSKWNIFQTYMPWFLTSTGYNYLNLLFLDTFSDLLPIL-- 1274

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHG  ISWRILQK+LCLP+
Sbjct: 1275 SSSQKFVSIFHDIMHGLDISWRILQKRLCLPQ 1301

[Close]

BLAST of CmaCh00G005130 vs. TrEMBL
Match: E5KUD9_CORLA (Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 2.2e-168
Identity = 299/332 (90.06%), Postives = 303/332 (91.27%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 980  MIDSFHTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1039

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INN DFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1040 HHFCFYCNKRFPFYVDYVEKARINNSDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1099

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRS+PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1100 ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQ 1159

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IV+FERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1160 IVHFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1219

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN  FLDTFSDLLPIL  
Sbjct: 1220 KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPIL-- 1279

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKK CLP+
Sbjct: 1280 SSSQKFVSIFHDIMHGSDISWRILQKKWCLPQ 1309

[Close]

BLAST of CmaCh00G005130 vs. TrEMBL
Match: A0A159BH99_9FABA (Ycf2 OS=Senna tora GN=ycf2 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 4.6e-166
Identity = 297/332 (89.46%), Postives = 301/332 (90.66%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTR NRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSF KA RLRFLNN 
Sbjct: 963  MIDSFHTRKNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFSKANRLRFLNNQ 1022

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCGD----------T 120
            HHFCFYCNKRFPFYV   EKACINNYDFTYGQFLNILFI +KIFSLCGD          T
Sbjct: 1023 HHFCFYCNKRFPFYV---EKACINNYDFTYGQFLNILFIRNKIFSLCGDKKKHAFLERDT 1082

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRS+PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1083 ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQ 1142

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1143 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1202

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTY+PWF TST YKYLNF FLDTFSDLLPIL  
Sbjct: 1203 KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYIPWFLTSTGYKYLNFLFLDTFSDLLPIL-- 1262

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKKLCLP+
Sbjct: 1263 SSSQKFVSIFHDIMHGSDISWRILQKKLCLPQ 1289

[Close]

BLAST of CmaCh00G005130 vs. TrEMBL
Match: A0A158V2G4_9FABA (Hypothetical chloroplast RF21 OS=Libidibia coriaria GN=ycf2 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 6.0e-166
Identity = 297/332 (89.46%), Postives = 301/332 (90.66%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTR NRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSF KA RLRFLNN 
Sbjct: 970  MIDSFHTRKNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFSKANRLRFLNNR 1029

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   EKACINNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1030 HHFCFYCNKRFPFYV---EKACINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1089

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRS+PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1090 ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQ 1149

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1150 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1209

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTY+PWF TST YKYLNF FLDTFSDLLPIL  
Sbjct: 1210 KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYIPWFLTSTGYKYLNFLFLDTFSDLLPIL-- 1269

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKKLCLP+
Sbjct: 1270 SSSQKFVSIFHDIMHGSDISWRILQKKLCLPQ 1296

[Close]

BLAST of CmaCh00G005130 vs. TrEMBL
Match: A0A158UVR1_9FABA (Hypothetical chloroplast RF21 OS=Haematoxylum brasiletto GN=ycf2 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 5.1e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTR NRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSF KA RLRFLNN 
Sbjct: 970  MIDSFHTRKNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFSKANRLRFLNNR 1029

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   EKACINNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1030 HHFCFYCNKRFPFYV---EKACINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1089

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRS+PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1090 ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQ 1149

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1150 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1209

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTY+PWF TST YKYLNF FLDTFSDLLPIL  
Sbjct: 1210 KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYIPWFLTSTGYKYLNFLFLDTFSDLLPIL-- 1269

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQK LCLP+
Sbjct: 1270 SSSQKFVSIFHDIMHGSDISWRILQKILCLPQ 1296

[Close]

BLAST of CmaCh00G005130 vs. TrEMBL
Match: A6YA39_9MAGN (Protein Ycf2 OS=Peridiscus lucidus GN=ycf2 PE=3 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 5.1e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFSMISHDQDNWLNPVK FH SSLISSFYKA RLRFLNNP
Sbjct: 969  MIDSFHTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNP 1028

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   EKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1029 HHFCFYCNKRFPFYV---EKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1088

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIES+VSNIFIPNDFPQSGDERYNLYKSFH  IRS PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1089 ISPIESRVSNIFIPNDFPQSGDERYNLYKSFHFPIRSVPFVRRAIYSIADISGTPLTEGQ 1148

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1149 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1208

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KC+EKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN  FLDTFSDLLPIL  
Sbjct: 1209 KCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPIL-- 1268

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKKLCLP+
Sbjct: 1269 SSSQKFVSIFHDIMHGSDISWRILQKKLCLPQ 1295

[Close]

BLAST of CmaCh00G005130 vs. TAIR10
Match: ATCG00860.1 (ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 518.1 bits (1333), Expect = 4.3e-147
Identity = 274/337 (81.31%), Postives = 284/337 (84.27%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDS-YFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNN 60
            MIDSFHTR NRR SFDNTDS YFS++SHDQDNWLNPVK F RSSLISSF KA RLRFLNN
Sbjct: 979  MIDSFHTRKNRRKSFDNTDSAYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNN 1038

Query: 61   PHHFCFYCNKRFPFYVDYVEKACINNYDFT--YGQFLNILFIPDKIFSLCG--------- 120
            PHHFCFYCNKRFPFYV   EKA +NN DFT  YGQFL ILFI +K FS CG         
Sbjct: 1039 PHHFCFYCNKRFPFYV---EKARLNNSDFTFTYGQFLTILFIHNKTFSSCGGKKKHAFLE 1098

Query: 121  -DTISP--IESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTP 180
             DTISP  IESQVSNIFI NDFPQSGDERYNLYKSFH  IRS+P VRRAIYSIADISGTP
Sbjct: 1099 RDTISPSSIESQVSNIFISNDFPQSGDERYNLYKSFHFPIRSDPLVRRAIYSIADISGTP 1158

Query: 181  LTEGQIVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKR 240
            L EGQ VNFERTYCQ LS MNLSDSE K+LHQYL FNSNMGLIHTPCSEKYL   +RKKR
Sbjct: 1159 LIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL---QRKKR 1218

Query: 241  SLCLKKCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLL 300
            SLCLKKC++KGQM RTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLL
Sbjct: 1219 SLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLL 1278

Query: 301  PILSISSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
             IL  SSSQKFVSIF DIMHG  ISWRILQKKLCLP+
Sbjct: 1279 RIL--SSSQKFVSIFHDIMHGLDISWRILQKKLCLPQ 1307

[Close]

BLAST of CmaCh00G005130 vs. TAIR10
Match: ATCG01280.1 (ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core)

HSP 1 Score: 518.1 bits (1333), Expect = 4.3e-147
Identity = 274/337 (81.31%), Postives = 284/337 (84.27%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDS-YFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNN 60
            MIDSFHTR NRR SFDNTDS YFS++SHDQDNWLNPVK F RSSLISSF KA RLRFLNN
Sbjct: 979  MIDSFHTRKNRRKSFDNTDSAYFSIVSHDQDNWLNPVKPFQRSSLISSFSKANRLRFLNN 1038

Query: 61   PHHFCFYCNKRFPFYVDYVEKACINNYDFT--YGQFLNILFIPDKIFSLCG--------- 120
            PHHFCFYCNKRFPFYV   EKA +NN DFT  YGQFL ILFI +K FS CG         
Sbjct: 1039 PHHFCFYCNKRFPFYV---EKARLNNSDFTFTYGQFLTILFIHNKTFSSCGGKKKHAFLE 1098

Query: 121  -DTISP--IESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTP 180
             DTISP  IESQVSNIFI NDFPQSGDERYNLYKSFH  IRS+P VRRAIYSIADISGTP
Sbjct: 1099 RDTISPSSIESQVSNIFISNDFPQSGDERYNLYKSFHFPIRSDPLVRRAIYSIADISGTP 1158

Query: 181  LTEGQIVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKR 240
            L EGQ VNFERTYCQ LS MNLSDSE K+LHQYL FNSNMGLIHTPCSEKYL   +RKKR
Sbjct: 1159 LIEGQRVNFERTYCQTLSDMNLSDSEEKSLHQYLNFNSNMGLIHTPCSEKYL---QRKKR 1218

Query: 241  SLCLKKCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLL 300
            SLCLKKC++KGQM RTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLL
Sbjct: 1219 SLCLKKCVDKGQMDRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLIFLDTFSDLL 1278

Query: 301  PILSISSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
             IL  SSSQKFVSIF DIMHG  ISWRILQKKLCLP+
Sbjct: 1279 RIL--SSSQKFVSIFHDIMHGLDISWRILQKKLCLPQ 1307

[Close]

BLAST of CmaCh00G005130 vs. NCBI nr
Match: gi|317046216|ref|YP_004072505.1| (Ycf2 protein [Corynocarpus laevigata])

HSP 1 Score: 599.7 bits (1545), Expect = 3.2e-168
Identity = 299/332 (90.06%), Postives = 303/332 (91.27%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKA RLRFLNNP
Sbjct: 980  MIDSFHTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKANRLRFLNNP 1039

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INN DFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1040 HHFCFYCNKRFPFYVDYVEKARINNSDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1099

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRS+PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1100 ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSDPFVRRAIYSIADISGTPLTEGQ 1159

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IV+FERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1160 IVHFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1219

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN  FLDTFSDLLPIL  
Sbjct: 1220 KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPIL-- 1279

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKK CLP+
Sbjct: 1280 SSSQKFVSIFHDIMHGSDISWRILQKKWCLPQ 1309

[Close]

BLAST of CmaCh00G005130 vs. NCBI nr
Match: gi|146261284|gb|ABQ14899.1| (Ycf2 [Peridiscus lucidus])

HSP 1 Score: 588.6 bits (1516), Expect = 7.3e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSFHTRNNRR SFDNTDSYFSMISHDQDNWLNPVK FH SSLISSFYKA RLRFLNNP
Sbjct: 969  MIDSFHTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHGSSLISSFYKANRLRFLNNP 1028

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYV   EKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 1029 HHFCFYCNKRFPFYV---EKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 1088

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIES+VSNIFIPNDFPQSGDERYNLYKSFH  IRS PFVRRAIYSIADISGTPLTEGQ
Sbjct: 1089 ISPIESRVSNIFIPNDFPQSGDERYNLYKSFHFPIRSVPFVRRAIYSIADISGTPLTEGQ 1148

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKKRSLCLK
Sbjct: 1149 IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 1208

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KC+EKGQMYRTFQRDSAFSTLSKWNLFQTYMPWF TST YKYLN  FLDTFSDLLPIL  
Sbjct: 1209 KCVEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFLTSTGYKYLNLIFLDTFSDLLPIL-- 1268

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSSQKFVSIF DIMHGS ISWRILQKKLCLP+
Sbjct: 1269 SSSQKFVSIFHDIMHGSDISWRILQKKLCLPQ 1295

[Close]

BLAST of CmaCh00G005130 vs. NCBI nr
Match: gi|68164847|ref|YP_247643.1| (Ycf2 [Cucumis sativus])

HSP 1 Score: 588.2 bits (1515), Expect = 9.5e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSF TRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKATRLRFLNNP
Sbjct: 678  MIDSFDTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNP 737

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 738  HHFCFYCNKRFPFYVDYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 797

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRSNPFVRRAIYSIADIS TPLTEGQ
Sbjct: 798  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQ 857

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKK+SL  K
Sbjct: 858  IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRK 917

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLLPIL  
Sbjct: 918  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLLFLDTFSDLLPIL-- 977

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSS KFVSIF DIMH S  SWRIL+KKLCLP+
Sbjct: 978  SSSPKFVSIFDDIMHRSDRSWRILRKKLCLPQ 1007

[Close]

BLAST of CmaCh00G005130 vs. NCBI nr
Match: gi|109896297|sp|Q2QD30.1|YCF2_CUCSA (RecName: Full=Protein Ycf2)

HSP 1 Score: 588.2 bits (1515), Expect = 9.5e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSF TRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKATRLRFLNNP
Sbjct: 678  MIDSFDTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNP 737

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 738  HHFCFYCNKRFPFYVDYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 797

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRSNPFVRRAIYSIADIS TPLTEGQ
Sbjct: 798  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQ 857

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKK+SL  K
Sbjct: 858  IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRK 917

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLLPIL  
Sbjct: 918  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLLFLDTFSDLLPIL-- 977

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSS KFVSIF DIMH S  SWRIL+KKLCLP+
Sbjct: 978  SSSPKFVSIFDDIMHRSDRSWRILRKKLCLPQ 1007

[Close]

BLAST of CmaCh00G005130 vs. NCBI nr
Match: gi|68164865|ref|YP_247661.1| (Ycf2 [Cucumis sativus])

HSP 1 Score: 588.2 bits (1515), Expect = 9.5e-165
Identity = 296/332 (89.16%), Postives = 300/332 (90.36%), Query Frame = 1


Query: 1    MIDSFHTRNNRRISFDNTDSYFSMISHDQDNWLNPVKLFHRSSLISSFYKATRLRFLNNP 60
            MIDSF TRNNRR SFDNTDSYFSMISHDQDNWLNPVK FHRSSLISSFYKATRLRFLNNP
Sbjct: 678  MIDSFDTRNNRRKSFDNTDSYFSMISHDQDNWLNPVKPFHRSSLISSFYKATRLRFLNNP 737

Query: 61   HHFCFYCNKRFPFYVDYVEKACINNYDFTYGQFLNILFIPDKIFSLCG----------DT 120
            HHFCFYCNKRFPFYVDYVEKA INNYDFTYGQFLNILFI +KIFSLCG          DT
Sbjct: 738  HHFCFYCNKRFPFYVDYVEKARINNYDFTYGQFLNILFIRNKIFSLCGGKKKHAFLERDT 797

Query: 121  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHLTIRSNPFVRRAIYSIADISGTPLTEGQ 180
            ISPIESQVSNIFIPNDFPQSGDERYNLYKSFH  IRSNPFVRRAIYSIADIS TPLTEGQ
Sbjct: 798  ISPIESQVSNIFIPNDFPQSGDERYNLYKSFHFPIRSNPFVRRAIYSIADISVTPLTEGQ 857

Query: 181  IVNFERTYCQPLSYMNLSDSEGKNLHQYLTFNSNMGLIHTPCSEKYLPSEKRKKRSLCLK 240
            IVNFERTYCQPLS MNLSDSEGKNLHQYL FNSNMGLIHTPCSEKYLPSEKRKK+SL  K
Sbjct: 858  IVNFERTYCQPLSDMNLSDSEGKNLHQYLNFNSNMGLIHTPCSEKYLPSEKRKKQSLYRK 917

Query: 241  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTRYKYLNFPFLDTFSDLLPILSI 300
            KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTST YKYLN  FLDTFSDLLPIL  
Sbjct: 918  KCLEKGQMYRTFQRDSAFSTLSKWNLFQTYMPWFFTSTGYKYLNLLFLDTFSDLLPIL-- 977

Query: 301  SSSQKFVSIFRDIMHGSAISWRILQKKLCLPK 323
            SSS KFVSIF DIMH S  SWRIL+KKLCLP+
Sbjct: 978  SSSPKFVSIFDDIMHRSDRSWRILRKKLCLPQ 1007

The following BLAST results are available for this feature:

BLAST of CmaCh00G005130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF2_CUCSA	6.0e-167	89.16	Protein Ycf2 OS=Cucumis sativus GN=ycf2-A PE=3 SV=1	[more]
YCF2_VITVI	2.1e-164	87.95	Protein Ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1	[more]
YCF2_EUCGG	2.8e-164	87.65	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus GN=ycf2-A PE=3 SV=1	[more]
YCF2_PANGI	6.2e-164	88.22	Protein Ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1	[more]
YCF2_MORIN	4.4e-162	86.75	Protein Ycf2 OS=Morus indica GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh00G005130 vs. TrEMBL


Match Name	E-value	Identity	Description
E5KUD9_CORLA	2.2e-168	90.06	Protein Ycf2 OS=Corynocarpus laevigatus GN=ycf2 PE=3 SV=1	[more]
A0A159BH99_9FABA	4.6e-166	89.46	Ycf2 OS=Senna tora GN=ycf2 PE=4 SV=1	[more]
A0A158V2G4_9FABA	6.0e-166	89.46	Hypothetical chloroplast RF21 OS=Libidibia coriaria GN=ycf2 PE=4 SV=1	[more]
A0A158UVR1_9FABA	5.1e-165	89.16	Hypothetical chloroplast RF21 OS=Haematoxylum brasiletto GN=ycf2 PE=4 SV=1	[more]
A6YA39_9MAGN	5.1e-165	89.16	Protein Ycf2 OS=Peridiscus lucidus GN=ycf2 PE=3 SV=1	[more]

BLAST of CmaCh00G005130 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00860.1	4.3e-147	81.31	ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	4.3e-147	81.31	ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of CmaCh00G005130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|317046216\|ref\|YP_004072505.1\|	3.2e-168	90.06	Ycf2 protein [Corynocarpus laevigata]	[more]
gi\|146261284\|gb\|ABQ14899.1\|	7.3e-165	89.16	Ycf2 [Peridiscus lucidus]	[more]
gi\|68164847\|ref\|YP_247643.1\|	9.5e-165	89.16	Ycf2 [Cucumis sativus]	[more]
gi\|109896297\|sp\|Q2QD30.1\|YCF2_CUCSA	9.5e-165	89.16	RecName: Full=Protein Ycf2	[more]
gi\|68164865\|ref\|YP_247661.1\|	9.5e-165	89.16	Ycf2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008543	Uncharacterised_Ycf2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009507	chloroplast

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G005130.1	CmaCh00G005130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..323 score: 7.3E
None	No IPR available	PANTHER	PTHR33078	FAMILY NOT NAMED	coord: 1..321 score: 2.9E
None	No IPR available	PANTHER	PTHR33078:SF4	SUBFAMILY NOT NAMED	coord: 1..321 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G005130	Cucumber (Chinese Long) v3	cmacucB0002
CmaCh00G005130	Watermelon (97103) v2	cmawmbB002
CmaCh00G005130	Watermelon (97103) v2	cmawmbB007
CmaCh00G005130	Cucurbita maxima (Rimu)	cmacmaB015
CmaCh00G005130	Cucumber (Gy14) v1	cgycmaB0707
CmaCh00G005130	Cucurbita moschata (Rifu)	cmacmoB012
CmaCh00G005130	Cucurbita moschata (Rifu)	cmacmoB017
CmaCh00G005130	Wild cucumber (PI 183967)	cmacpiB004
CmaCh00G005130	Cucumber (Chinese Long) v2	cmacuB004
CmaCh00G005130	Cucurbita pepo (Zucchini)	cmacpeB023
CmaCh00G005130	Cucumber (Gy14) v2	cgybcmaB275
CmaCh00G005130	Cucumber (Gy14) v2	cgybcmaB280
CmaCh00G005130	Melon (DHL92) v3.6.1	cmamedB002
CmaCh00G005130	Silver-seed gourd	carcmaB0323