CmaCh00G005080 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRibosomal protein large subunit 5
LocationCma_Chr00 : 36473919 .. 36474389 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGACTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGTGA

mRNA sequence

ATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGACTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGTGA

Coding sequence (CDS)

ATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCAAAAATGGAAAATTGGCTATGGAGATTCCGCGCGGTCAGAAATTGATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCCCGACAAAGCACTCTCCGAGGGCATGGAATGTCGAATTTTGCGGTCAGAATCTGCACAGTAATGTCTCTCTTAGATTCTCCGGTCGAAATACGGGAAAACTCCATGCAATTCTCGATGGAAACAGAGTTTTGCGAATTCTCCCCGGAACTAGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGACTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGTGA

Protein sequence

MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE
Homology
[Close]
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match: RM05_ARATH (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.8e-76
Identity = 142/156 (91.03%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPG CEIRVVPKAPY+FIIKNGKLAMEIP GQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF VRI TVMSLLD PVEIR+NS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPVEIRKNSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTI+TSANTQDETL  WSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match: RM05_BRANA (60S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2)

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-75
Identity = 137/152 (90.13%), Postives = 144/152 (94.74%), Query Frame = 1 

Query: 5   GSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDKGYVS 64
           GSCEIRVVP  PY+FIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDKGYVS
Sbjct: 30  GSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVS 89

Query: 65  DLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDHFEIF 124
           DLARQSTLRGHGMSNF+VRI TVMSLLD PVEIR+NS+QFSMETEFCEF+P+L+DHFEIF
Sbjct: 90  DLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETEFCEFAPQLQDHFEIF 149

Query: 125 EHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           EHI GFNVTIVTSANTQDETLP WSGFLQKDE
Sbjct: 150 EHIRGFNVTIVTSANTQDETLPLWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match: RM05_OENBE (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 8.5e-73
Identity = 140/158 (88.61%), Postives = 144/158 (91.14%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPK--APYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNK 60
           MEVPG CEIR+VPK  + YDFIIKNGKLAMEI RGQK IQT+RGSTGKSFRSNPFLESNK
Sbjct: 26  MEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTERGSTGKSFRSNPFLESNK 85

Query: 61  DKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELE 120
           DKGYVSDLARQS LRGHGMSNF VRI TVMSLLDS VEIRENS+QFSMETEFCEFSPELE
Sbjct: 86  DKGYVSDLARQSILRGHGMSNFLVRILTVMSLLDSRVEIRENSIQFSMETEFCEFSPELE 145

Query: 121 DHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           DHFEIFEHI  FNVTIVTSANTQDETL  WSGFLQKDE
Sbjct: 146 DHFEIFEHIRRFNVTIVTSANTQDETLLLWSGFLQKDE 183

[Close]
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match: RM05_SOLTU (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-63
Identity = 131/157 (83.44%), Postives = 135/157 (85.99%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKD- 60
           MEVPG C+I VVPK      IKNGKLAMEI  GQKL   QR STGKSFRSNPFL SNKD 
Sbjct: 30  MEVPGLCKIIVVPKTAPS--IKNGKLAMEISCGQKL--KQRASTGKSFRSNPFLGSNKDK 89

Query: 61  KGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELED 120
           KGYVSDLARQSTLRGHGMS+F VRI TVMSLLDSP+EIRE S+QFSMETEFCEFSPELED
Sbjct: 90  KGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDSPLEIRERSIQFSMETEFCEFSPELED 149

Query: 121 HFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           HFEIFEHI GFNVTIVTSANTQDETL  WSGFLQKDE
Sbjct: 150 HFEIFEHIRGFNVTIVTSANTQDETLLLWSGFLQKDE 182

[Close]
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match: RM05_MARPO (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-45
Identity = 102/159 (64.15%), Postives = 121/159 (76.10%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQ-RGSTGKSFRSNPFL---ES 60
           MEVP  C+I VVPKAP +FI KN KLAMEI  GQK IQT+ RGSTGKSFR N F+   ES
Sbjct: 31  MEVPRLCKIIVVPKAPSNFI-KNVKLAMEIVCGQKFIQTRSRGSTGKSFRFNKFVLNQES 90

Query: 61  NKDKGYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPE 120
            +D GYV+ LAR STLRGH M NF  ++ T++S  D PV+I++NS+Q SM T      PE
Sbjct: 91  KRDTGYVTYLAR-STLRGHIMYNFLEKLVTIISFYDYPVKIQKNSIQLSMATSLLRLFPE 150

Query: 121 LEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKD 156
           ++DHFEIFEHI GF+VTIVTSANTQDET+  WSGFLQK+
Sbjct: 151 IQDHFEIFEHIRGFDVTIVTSANTQDETVILWSGFLQKE 187

[Close]
BLAST of CmaCh00G005080 vs. TrEMBL
Match: K7KH99_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-80
Identity = 150/156 (96.15%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TrEMBL
Match: K7M8M6_SOYBN (Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-80
Identity = 150/156 (96.15%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TrEMBL
Match: A0A0M4REQ6_CANSA (Ribosomal protein L5 OS=Cannabis sativa GN=rpl5 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.6e-80
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQT+RGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TrEMBL
Match: N0DKE4_PHAAN (Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.6e-80
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNK+K
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKEK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TrEMBL
Match: A0A0G3BEX2_9ROSI (Ribosomal protein L5 OS=Francoa sonchifolia GN=rpl5 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-79
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMS+F+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TAIR10
Match: AT2G07725.1 (AT2G07725.1 Ribosomal L5P family protein)

HSP 1 Score: 295.8 bits (756), Expect = 1.5e-80
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPY+FIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLD PVEIR+NS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTI+TSANTQDETLP WSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. TAIR10
Match: ATMG00210.1 (ATMG00210.1 ribosomal protein L5)

HSP 1 Score: 295.8 bits (756), Expect = 1.5e-80
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPY+FIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLD PVEIR+NS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTI+TSANTQDETLP WSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. NCBI nr
Match: gi|476507674|ref|YP_007516856.1| (ribosomal protein subunit L5 (mitochondrion) [Glycine max])

HSP 1 Score: 305.8 bits (782), Expect = 4.2e-80
Identity = 150/156 (96.15%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. NCBI nr
Match: gi|1016880326|ref|YP_009243665.1| (ribosomal protein L5 (mitochondrion) [Cannabis sativa])

HSP 1 Score: 304.7 bits (779), Expect = 9.4e-80
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQT+RGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. NCBI nr
Match: gi|501595012|ref|YP_007889799.1| (ribosomal protein L5 (mitochondrion) [Vigna angularis])

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-79
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNK+K
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKEK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. NCBI nr
Match: gi|825716735|gb|AKJ25869.1| (ribosomal protein L5 (mitochondrion) [Francoa sonchifolia])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 149/156 (95.51%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL SNKDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMS+F+VRI TVMSLLDSPVEIRENS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSHFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

[Close]
BLAST of CmaCh00G005080 vs. NCBI nr
Match: gi|1016470823|ref|YP_009241682.1| (ribosomal protein L5 (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 302.4 bits (773), Expect = 4.7e-79
Identity = 148/156 (94.87%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKLIQTQRGSTGKSFRSNPFLESNKDK 60
           MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQK IQTQRGSTGKSFRSNPFL S+KDK
Sbjct: 26  MEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSSKDK 85

Query: 61  GYVSDLARQSTLRGHGMSNFAVRICTVMSLLDSPVEIRENSMQFSMETEFCEFSPELEDH 120
           GYVSDLARQSTLRGHGMSNF+VRI TVMSLLDSPVEIR+NS+QFSMETEFCEFSPELEDH
Sbjct: 86  GYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRKNSIQFSMETEFCEFSPELEDH 145

Query: 121 FEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDE 157
           FEIFEHI GFNVTIVTSANTQDETLPPWSGFLQKDE
Sbjct: 146 FEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDE 181

The following BLAST results are available for this feature:
BLAST of CmaCh00G005080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM05_ARATH2.8e-7691.0360S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=... [more]
RM05_BRANA7.0e-7590.1360S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2[more]
RM05_OENBE8.5e-7388.6160S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=... [more]
RM05_SOLTU2.8e-6383.4460S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2[more]
RM05_MARPO2.6e-4564.1560S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV... [more]
BLAST of CmaCh00G005080 vs. TrEMBL
Match NameE-valueIdentityDescription
K7KH99_SOYBN2.9e-8096.15Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7M8M6_SOYBN2.9e-8096.15Ribosomal protein subunit L5 OS=Glycine max GN=rp15 PE=4 SV=1[more]
A0A0M4REQ6_CANSA6.6e-8095.51Ribosomal protein L5 OS=Cannabis sativa GN=rpl5 PE=4 SV=1[more]
N0DKE4_PHAAN8.6e-8095.51Ribosomal protein L5 OS=Phaseolus angularis GN=rpl5 PE=4 SV=1[more]
A0A0G3BEX2_9ROSI1.1e-7995.51Ribosomal protein L5 OS=Francoa sonchifolia GN=rpl5 PE=4 SV=1[more]
BLAST of CmaCh00G005080 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07725.11.5e-8092.95 Ribosomal L5P family protein[more]
ATMG00210.11.5e-8092.95ATMG00210.1 ribosomal protein L5[more]
BLAST of CmaCh00G005080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|476507674|ref|YP_007516856.1|4.2e-8096.15ribosomal protein subunit L5 (mitochondrion) [Glycine max][more]
gi|1016880326|ref|YP_009243665.1|9.4e-8095.51ribosomal protein L5 (mitochondrion) [Cannabis sativa][more]
gi|501595012|ref|YP_007889799.1|1.2e-7995.51ribosomal protein L5 (mitochondrion) [Vigna angularis][more]
gi|825716735|gb|AKJ25869.1|1.6e-7995.51ribosomal protein L5 (mitochondrion) [Francoa sonchifolia][more]
gi|1016470823|ref|YP_009241682.1|4.7e-7994.87ribosomal protein L5 (mitochondrion) [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002132Ribosomal_L5
IPR022803Ribosomal_L5_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005080.1CmaCh00G005080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002132Ribosomal protein L5PIRPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..156
score: 5.6
IPR022803Ribosomal protein L5 domainGENE3DG3DSA:3.30.1440.10coord: 1..151
score: 5.7
IPR022803Ribosomal protein L5 domainunknownSSF55282RL5-likecoord: 1..152
score: 1.55
NoneNo IPR availablePANTHERPTHR1199460S RIBOSOMAL PROTEIN L11-RELATEDcoord: 1..152
score: 8.9
NoneNo IPR availablePANTHERPTHR11994:SF11SUBFAMILY NOT NAMEDcoord: 1..152
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G005080Melon (DHL92) v3.6.1cmamedB002
CmaCh00G005080Silver-seed gourdcarcmaB0323
CmaCh00G005080Cucumber (Chinese Long) v3cmacucB0002
CmaCh00G005080Watermelon (97103) v2cmawmbB002
CmaCh00G005080Watermelon (97103) v2cmawmbB007
CmaCh00G005080Cucurbita maxima (Rimu)cmacmaB003
CmaCh00G005080Cucurbita maxima (Rimu)cmacmaB015
CmaCh00G005080Cucumber (Gy14) v1cgycmaB0707
CmaCh00G005080Cucurbita moschata (Rifu)cmacmoB012
CmaCh00G005080Cucurbita moschata (Rifu)cmacmoB017
CmaCh00G005080Wild cucumber (PI 183967)cmacpiB004
CmaCh00G005080Cucumber (Chinese Long) v2cmacuB004
CmaCh00G005080Cucurbita pepo (Zucchini)cmacpeB023
CmaCh00G005080Cucumber (Gy14) v2cgybcmaB275
CmaCh00G005080Cucumber (Gy14) v2cgybcmaB280