CmaCh00G002980 (gene) Cucurbita maxima (Rimu)

NameCmaCh00G002980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBHLH transcription factor
LocationCma_Chr00 : 22651495 .. 22651797 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

mRNA sequence

ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

Coding sequence (CDS)

ATGGAATATGAAAGGGAGCAATCCGGCATCACCTCAAGTGAAGCAACCCCTTCGGAGACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCATTGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAGTGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACCTGTTGA

Protein sequence

MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLTC
BLAST of CmaCh00G002980 vs. Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-12
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 1

Query: 34  DIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKS- 93
           ++D++A N+EV+V+V  PL+SHPASR+I+AM+N+ +S++++KLS+   DT+ HTF IKS 
Sbjct: 471 EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSL-AEDTMFHTFVIKSN 530

Query: 94  PGSEQLT 100
            GS+ LT
Sbjct: 531 NGSDPLT 536

BLAST of CmaCh00G002980 vs. Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.2e-12
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-06
Identity = 28/86 (32.56%), Postives = 54/86 (62.79%), Query Frame = 1

Query: 19  ETNPEIENK---DQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSK 78
           ET  +I  +   +Q    ++D +  +D+ +V++SCPLE+HP S+VI+ ++  ++   DS 
Sbjct: 373 ETEKQIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSN 432

Query: 79  LSVEVNDTVLHTFTIKSPG---SEQL 99
           +++   + V+HTFT++  G   +EQL
Sbjct: 433 VAI-TEEGVVHTFTLRPQGGCTAEQL 457

BLAST of CmaCh00G002980 vs. TrEMBL
Match: A0A0A0L748_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119500 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.3e-36
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME+ERE+S +TSSEATPSE NPEIE KDQFLDVDIDVEA +DEVIVKVSCPLESHPASRV
Sbjct: 470 MEFEREKSSLTSSEATPSEGNPEIETKDQFLDVDIDVEAAHDEVIVKVSCPLESHPASRV 529

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           IKAM++AQI+V+DSKLS E ND VLHTF IKSPGSEQLT
Sbjct: 530 IKAMRDAQINVIDSKLS-EANDKVLHTFVIKSPGSEQLT 567

BLAST of CmaCh00G002980 vs. TrEMBL
Match: W9S2H5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023493 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.9e-21
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1

Query: 1   MEYEREQSGITS--SEATPSETN-PEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPA 60
           ME ERE+ G TS  S A   ETN P++EN+++  DVD  V+A +DEVIVKVSCPL+SHPA
Sbjct: 498 MEAEREKVGNTSRDSSAMAMETNNPDLENQNRVPDVD--VQAVHDEVIVKVSCPLDSHPA 557

Query: 61  SRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           SRVI+A K AQI+VV+SKL+  VNDTV HTF IKS GSEQLT
Sbjct: 558 SRVIQAFKEAQINVVESKLAA-VNDTVFHTFVIKSQGSEQLT 596

BLAST of CmaCh00G002980 vs. TrEMBL
Match: A6NAB4_VITVI (Myc2 bHLH protein OS=Vitis vinifera GN=Myc2 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G TS +A   ETN E E   Q  DVDI  +A NDEVIV+VSCPL++HP SRV
Sbjct: 490 MESEREKFGSTSRDALSLETNTEAETHIQASDVDI--QAANDEVIVRVSCPLDTHPVSRV 549

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQL 99
           I+  K AQI+V++SKL+ + NDTVLHTF IKS GSEQL
Sbjct: 550 IQTFKEAQITVIESKLATD-NDTVLHTFVIKSQGSEQL 584

BLAST of CmaCh00G002980 vs. TrEMBL
Match: A0A067JX67_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14248 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-20
Identity = 59/99 (59.60%), Postives = 77/99 (77.78%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S +A+  E N  ++N  Q  +VDI  +A +DEVIV++SCPL+SHPASRV
Sbjct: 493 MEAEREKFGSSSRDASTLEANSNMKNHSQAPEVDI--QASHDEVIVRISCPLDSHPASRV 552

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           I+A+K+AQI+VVDSKL+   NDTV HTF IKS GSEQ+T
Sbjct: 553 IQALKDAQINVVDSKLAA-ANDTVFHTFVIKSQGSEQIT 588

BLAST of CmaCh00G002980 vs. TrEMBL
Match: A0A0N9QUR5_PRUAV (BHLH transcription factor OS=Prunus avium GN=bHLH13 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-20
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME +RE  G TS +A+    NP I  ++Q    D+D++A +DEV+V+VSCPL+SHPASRV
Sbjct: 496 MEADRENLGGTSRDASALGANPGISTENQSQAPDVDIQAVHDEVVVRVSCPLDSHPASRV 555

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           I+A K AQI+V++SKL    NDTV HTF IKS GSE LT
Sbjct: 556 IQAFKEAQITVLESKLCCAANDTVCHTFVIKSQGSEPLT 594

BLAST of CmaCh00G002980 vs. TAIR10
Match: AT2G46510.1 (AT2G46510.1 ABA-inducible BHLH-type transcription factor)

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 1

Query: 34  DIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKS- 93
           ++D++A N+EV+V+V  PL+SHPASR+I+AM+N+ +S++++KLS+   DT+ HTF IKS 
Sbjct: 471 EVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSL-AEDTMFHTFVIKSN 530

Query: 94  PGSEQLT 100
            GS+ LT
Sbjct: 531 NGSDPLT 536

BLAST of CmaCh00G002980 vs. TAIR10
Match: AT1G01260.1 (AT1G01260.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-13
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G +S        NP I      LD DI+V+   ++V V+++CPLESHPASR+
Sbjct: 485 MEAERERLGYSS--------NPPIS-----LDSDINVQTSGEDVTVRINCPLESHPASRI 544

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
             A + +++ V++S L V   DTVLHTF +K   SE+LT
Sbjct: 545 FHAFEESKVEVINSNLEVS-QDTVLHTFVVK---SEELT 566

BLAST of CmaCh00G002980 vs. TAIR10
Match: AT4G16430.1 (AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-07
Identity = 28/86 (32.56%), Postives = 54/86 (62.79%), Query Frame = 1

Query: 19  ETNPEIENK---DQFLDVDIDVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQISVVDSK 78
           ET  +I  +   +Q    ++D +  +D+ +V++SCPLE+HP S+VI+ ++  ++   DS 
Sbjct: 373 ETEKQIMKRRESNQITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSN 432

Query: 79  LSVEVNDTVLHTFTIKSPG---SEQL 99
           +++   + V+HTFT++  G   +EQL
Sbjct: 433 VAI-TEEGVVHTFTLRPQGGCTAEQL 457

BLAST of CmaCh00G002980 vs. NCBI nr
Match: gi|659074943|ref|XP_008437879.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-36
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME+ERE+S +TSSEATPSE NPEIENKDQFLDV+IDVEA +DEVIVKVSCPLESHPASRV
Sbjct: 500 MEFEREKSSLTSSEATPSEGNPEIENKDQFLDVEIDVEAAHDEVIVKVSCPLESHPASRV 559

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           IKAM++AQI+V+DSKLS E ND VLHTF IKSPGSEQLT
Sbjct: 560 IKAMRDAQINVIDSKLS-EANDKVLHTFVIKSPGSEQLT 597

BLAST of CmaCh00G002980 vs. NCBI nr
Match: gi|449432042|ref|XP_004133809.1| (PREDICTED: transcription factor bHLH13 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME+ERE+S +TSSEATPSE NPEIE KDQFLDVDIDVEA +DEVIVKVSCPLESHPASRV
Sbjct: 502 MEFEREKSSLTSSEATPSEGNPEIETKDQFLDVDIDVEAAHDEVIVKVSCPLESHPASRV 561

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           IKAM++AQI+V+DSKLS E ND VLHTF IKSPGSEQLT
Sbjct: 562 IKAMRDAQINVIDSKLS-EANDKVLHTFVIKSPGSEQLT 599

BLAST of CmaCh00G002980 vs. NCBI nr
Match: gi|700201284|gb|KGN56417.1| (hypothetical protein Csa_3G119500 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME+ERE+S +TSSEATPSE NPEIE KDQFLDVDIDVEA +DEVIVKVSCPLESHPASRV
Sbjct: 470 MEFEREKSSLTSSEATPSEGNPEIETKDQFLDVDIDVEAAHDEVIVKVSCPLESHPASRV 529

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           IKAM++AQI+V+DSKLS E ND VLHTF IKSPGSEQLT
Sbjct: 530 IKAMRDAQINVIDSKLS-EANDKVLHTFVIKSPGSEQLT 567

BLAST of CmaCh00G002980 vs. NCBI nr
Match: gi|703114704|ref|XP_010100724.1| (hypothetical protein L484_023493 [Morus notabilis])

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-20
Identity = 67/102 (65.69%), Postives = 80/102 (78.43%), Query Frame = 1

Query: 1   MEYEREQSGITS--SEATPSETN-PEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPA 60
           ME ERE+ G TS  S A   ETN P++EN+++  DVD  V+A +DEVIVKVSCPL+SHPA
Sbjct: 498 MEAEREKVGNTSRDSSAMAMETNNPDLENQNRVPDVD--VQAVHDEVIVKVSCPLDSHPA 557

Query: 61  SRVIKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQLT 100
           SRVI+A K AQI+VV+SKL+  VNDTV HTF IKS GSEQLT
Sbjct: 558 SRVIQAFKEAQINVVESKLAA-VNDTVFHTFVIKSQGSEQLT 596

BLAST of CmaCh00G002980 vs. NCBI nr
Match: gi|526118259|ref|NP_001267974.1| (Myc2 bHLH protein [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1

Query: 1   MEYEREQSGITSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVIVKVSCPLESHPASRV 60
           ME ERE+ G TS +A   ETN E E   Q  DVDI  +A NDEVIV+VSCPL++HP SRV
Sbjct: 490 MESEREKFGSTSRDALSLETNTEAETHIQASDVDI--QAANDEVIVRVSCPLDTHPVSRV 549

Query: 61  IKAMKNAQISVVDSKLSVEVNDTVLHTFTIKSPGSEQL 99
           I+  K AQI+V++SKL+ + NDTVLHTF IKS GSEQL
Sbjct: 550 IQTFKEAQITVIESKLATD-NDTVLHTFVIKSQGSEQL 584

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AIB_ARATH7.0e-1252.24Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2... [more]
BH013_ARATH9.2e-1244.44Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1[more]
BH003_ARATH2.6e-0632.56Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L748_CUCSA8.3e-3683.84Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119500 PE=4 SV=1[more]
W9S2H5_9ROSA9.9e-2165.69Uncharacterized protein OS=Morus notabilis GN=L484_023493 PE=4 SV=1[more]
A6NAB4_VITVI2.2e-2062.24Myc2 bHLH protein OS=Vitis vinifera GN=Myc2 PE=2 SV=1[more]
A0A067JX67_JATCU2.9e-2059.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14248 PE=4 SV=1[more]
A0A0N9QUR5_PRUAV6.4e-2056.57BHLH transcription factor OS=Prunus avium GN=bHLH13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46510.14.0e-1352.24 ABA-inducible BHLH-type transcription factor[more]
AT1G01260.15.2e-1344.44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G16430.11.5e-0732.56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659074943|ref|XP_008437879.1|7.0e-3683.84PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH13 [Cucumis melo][more]
gi|449432042|ref|XP_004133809.1|1.2e-3583.84PREDICTED: transcription factor bHLH13 [Cucumis sativus][more]
gi|700201284|gb|KGN56417.1|1.2e-3583.84hypothetical protein Csa_3G119500 [Cucumis sativus][more]
gi|703114704|ref|XP_010100724.1|1.4e-2065.69hypothetical protein L484_023493 [Morus notabilis][more]
gi|526118259|ref|NP_001267974.1|3.2e-2062.24Myc2 bHLH protein [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010629 negative regulation of gene expression
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009611 response to wounding
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002980.1CmaCh00G002980.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11514MYCcoord: 1..99
score: 6.4
NoneNo IPR availablePANTHERPTHR11514:SF47TRANSCRIPTION FACTOR ABA-INDUCIBLE BHLH-TYPE-RELATEDcoord: 1..99
score: 6.4