CmaCh00G002470 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G002470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCyclopropane-fatty-acyl-phospholipid synthase
LocationCma_Chr00 : 18245664 .. 18246486 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGCATCAAGGCTTTGGTAAATAGTTAATTTATGTTCTTCATTTTCAACAATAATTATTAACAAATAATGAAAAAAGTCCTTTGGATACAGTGTGGAGCACTTGGAAAATATTGGAATTCATTACTATCAAACATTGAGGTGTTGGAGAAAGAATTTCTTGAACAATCAAAGGTAAGAAACCATTATTATAATAAATGATTTTGAACAATCAAATGTAAGAAACCATTATCATAGTAAATGATTTCGAATCGAAATCTAATTTATATTTTGTTTCAGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGGTAATCATATTTTTACATAAGATATCAAATTAATGTTAAGAATTGTAACAACCCTAGTTTTCTAGGGATCTAAAGTCGCTACAGTATGTACGACGTAGCTTTTCATGCATAAATATTTGCCAACATTTTCATAAAACAATTTCATAAACTTAGAAATATTAGATAAAAGAAAATAGATATTAAAAGTGACAATGCTCTATTGTAACCAAATGTCTAAGAATTTAAATACAATTGTCATATGCATGTGTCATAATCTTTACTTGCGATATCGTTGTCAGCTGTACATGGACCGGTAATTATATATATCAGACTAAATATGCAATTGAAGTCATAATCTAAAACTTTATTGCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

mRNA sequence

ATGGCTTCTGCATCAAGGCTTTGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

Coding sequence (CDS)

ATGGCTTCTGCATCAAGGCTTTGCAAAATACTTCAACTCGGGTTCGATCAAGGTTTCATACGAACTTGGGAATACTATTTTGATTATTGCGCTGCTCGGTTTAAATCACGAACCCTTGAAGATTATCAGATTGTGTTTTCAAGGGCGGGTAATGTGGCAACTTTCAACAATTCATATGAAGAAATAGCTTCAGCATTCAAACTCCTTTGA

Protein sequence

MASASRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKLL
Homology
[Close]
BLAST of CmaCh00G002470 vs. TrEMBL
Match: A0A0A0LLG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G172470 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSRT+ DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 153 KIIELGFDESFIRTWEYYFDYCAAGFKSRTIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 212

[Close]
BLAST of CmaCh00G002470 vs. TrEMBL
Match: A0A067DNT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042963mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-18
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 1   MASASRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYE 60
           M S+SRLC+IL LGF + F+RTWEYYFDYCAA FKSRTL +Y++VFSR GNVA F+N +E
Sbjct: 107 MTSSSRLCEILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGNVAVFSNPHE 166

Query: 61  EIASA 66
              SA
Sbjct: 167 SFPSA 171

[Close]
BLAST of CmaCh00G002470 vs. TrEMBL
Match: A0A0A0LI58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171960 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.4e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSR + DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 213 KIIELGFDESFIRTWEYYFDYCAAGFKSRIIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 272

[Close]
BLAST of CmaCh00G002470 vs. TrEMBL
Match: A0A0A0LKK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171950 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-18
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAF 67
           KILQLGFD+ FIRTWEYYFDYCAA FKSRTL +YQIV+SR GNVA FNN Y+   SA+
Sbjct: 808 KILQLGFDESFIRTWEYYFDYCAAGFKSRTLNNYQIVYSRPGNVAVFNNPYQGFPSAY 865

[Close]
BLAST of CmaCh00G002470 vs. TrEMBL
Match: M1AB31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007265 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 

Query: 1   MASASRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYE 60
           MA+ASRLC+I  LGFD  F+RTWEYYFDYCAA FK+ TL DYQIVFSR GNVA F + Y 
Sbjct: 656 MAAASRLCQIRALGFDDKFVRTWEYYFDYCAAGFKTCTLGDYQIVFSRPGNVAAFGDPYN 715

Query: 61  EIASAF 67
            + S +
Sbjct: 716 VVPSTY 721

[Close]
BLAST of CmaCh00G002470 vs. TAIR10
Match: AT3G23510.1 (AT3G23510.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 87.4 bits (215), Expect = 3.7e-18
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAF 67
           +I+ LGFD  F+RTWEYYFDYCAA FK+RTL DYQ+VFSR GNVA F +SY    SA+
Sbjct: 807 QIMALGFDDKFVRTWEYYFDYCAAGFKTRTLGDYQLVFSRPGNVAAFADSYRGFPSAY 864

[Close]
BLAST of CmaCh00G002470 vs. TAIR10
Match: AT3G23530.1 (AT3G23530.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 5   SRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIAS 64
           +R  +I+ LGFD  F+RTWEYYFDYCAA FK+ TL +YQ+VFSR GNVA F +SY    S
Sbjct: 803 ARQKQIMALGFDDKFVRTWEYYFDYCAAGFKTLTLGNYQLVFSRPGNVAAFADSYRGFPS 862

Query: 65  AF 67
           A+
Sbjct: 863 AY 864

[Close]
BLAST of CmaCh00G002470 vs. TAIR10
Match: AT3G23480.2 (AT3G23480.2 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 80.5 bits (197), Expect = 4.5e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNN 58
           +I+ LGFD+ F+RTWEYYFDYCAA FK+ TL +YQIVFSR GNVA F N
Sbjct: 376 QIIDLGFDEKFLRTWEYYFDYCAAGFKTLTLRNYQIVFSRPGNVAAFGN 424

[Close]
BLAST of CmaCh00G002470 vs. TAIR10
Match: AT3G23470.1 (AT3G23470.1 Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-15
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNN 58
           +I+ LGFD  FIRTWEYYFDYCAA FK+ TL  YQIVFSR GNVA F +
Sbjct: 399 QIIDLGFDDKFIRTWEYYFDYCAAGFKTLTLRSYQIVFSRPGNVAAFGD 447

[Close]
BLAST of CmaCh00G002470 vs. TAIR10
Match: AT3G23460.1 (AT3G23460.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNV 53
           +I  LGFD  F+RT EYYFDYCAA FK+RT+ DYQIVFSR GNV
Sbjct: 236 QITDLGFDDRFVRTCEYYFDYCAAGFKTRTVGDYQIVFSRPGNV 279

[Close]
BLAST of CmaCh00G002470 vs. NCBI nr
Match: gi|778668696|ref|XP_011649140.1| (PREDICTED: uncharacterized protein LOC101213610 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSRT+ DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 810 KIIELGFDESFIRTWEYYFDYCAAGFKSRTIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 869

[Close]
BLAST of CmaCh00G002470 vs. NCBI nr
Match: gi|700206458|gb|KGN61577.1| (hypothetical protein Csa_2G172470 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSRT+ DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 153 KIIELGFDESFIRTWEYYFDYCAAGFKSRTIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 212

[Close]
BLAST of CmaCh00G002470 vs. NCBI nr
Match: gi|641820230|gb|KDO40251.1| (hypothetical protein CISIN_1g042963mg [Citrus sinensis])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-18
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 

Query: 1   MASASRLCKILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYE 60
           M S+SRLC+IL LGF + F+RTWEYYFDYCAA FKSRTL +Y++VFSR GNVA F+N +E
Sbjct: 107 MTSSSRLCEILDLGFSEKFLRTWEYYFDYCAAGFKSRTLRNYEVVFSRPGNVAVFSNPHE 166

Query: 61  EIASA 66
              SA
Sbjct: 167 SFPSA 171

[Close]
BLAST of CmaCh00G002470 vs. NCBI nr
Match: gi|778668693|ref|XP_011649139.1| (PREDICTED: uncharacterized protein LOC105434591 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSR + DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 811 KIIELGFDESFIRTWEYYFDYCAAGFKSRIIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 870

[Close]
BLAST of CmaCh00G002470 vs. NCBI nr
Match: gi|700206456|gb|KGN61575.1| (hypothetical protein Csa_2G171960 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 9   KILQLGFDQGFIRTWEYYFDYCAARFKSRTLEDYQIVFSRAGNVATFNNSYEEIASAFKL 68
           KI++LGFD+ FIRTWEYYFDYCAA FKSR + DYQIVFSRAGNV TFNN Y+ I SA  L
Sbjct: 213 KIIELGFDESFIRTWEYYFDYCAAGFKSRIIGDYQIVFSRAGNVTTFNNPYQGIPSANSL 272

The following BLAST results are available for this feature:
BLAST of CmaCh00G002470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G002470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLG9_CUCSA1.1e-1876.67Uncharacterized protein OS=Cucumis sativus GN=Csa_2G172470 PE=4 SV=1[more]
A0A067DNT5_CITSI2.4e-1867.69Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042963mg PE=4 SV=1[more]
A0A0A0LI58_CUCSA5.4e-1875.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171960 PE=4 SV=1[more]
A0A0A0LKK5_CUCSA7.0e-1875.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G171950 PE=4 SV=1[more]
M1AB31_SOLTU2.0e-1766.67Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007265 PE=4 SV=1[more]
BLAST of CmaCh00G002470 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23510.13.7e-1867.24 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23530.17.0e-1761.29 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23480.24.5e-1671.43 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23470.12.2e-1571.43 Cyclopropane-fatty-acyl-phospholipid synthase[more]
AT3G23460.14.7e-1372.73 S-adenosyl-L-methionine-dependent methyltransferases superfamily pro... [more]
BLAST of CmaCh00G002470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778668696|ref|XP_011649140.1|1.6e-1876.67PREDICTED: uncharacterized protein LOC101213610 [Cucumis sativus][more]
gi|700206458|gb|KGN61577.1|1.6e-1876.67hypothetical protein Csa_2G172470 [Cucumis sativus][more]
gi|641820230|gb|KDO40251.1|3.5e-1867.69hypothetical protein CISIN_1g042963mg [Citrus sinensis][more]
gi|778668693|ref|XP_011649139.1|7.7e-1875.00PREDICTED: uncharacterized protein LOC105434591 [Cucumis sativus][more]
gi|700206456|gb|KGN61575.1|7.7e-1875.00hypothetical protein Csa_2G171960 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008610 lipid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002470.1CmaCh00G002470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10108METHYLTRANSFERASEcoord: 9..62
score: 8.7
NoneNo IPR availablePANTHERPTHR10108:SF795CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASEcoord: 9..62
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G002470Cucurbita maxima (Rimu)cmacmaB004