CmaCh00G002120 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G002120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr00 : 14445445 .. 14446122 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACATGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCTCTATATGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCTTATCTTTTGTTTCATTTCTTCTGTAACAATCTCACAAACACTTTTTTGATTATGGATCTACTACCACAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCCTCATAATCTCATCATTCATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAAGATTTCTATTTTCGATGCAACAACAAAATGTTCTTTGTAAGAAGTCGTTTTGTTGGTTGGTTAATTGGTCACATTTTCTTCATTCAATGGGTTGGATTGATATTAGTCGCTATAGCAAAAGAATTCTATGTAGATCTAATAAGTACCTTGGGTTAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTACCTGTGTCTACTATTTAGGCGGAATACCTTCACCCATTTTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGAATCCGGACAAAATAGATGA

mRNA sequence

ATGGAAGAAGGAACTGAGAAGAAATATTCTCTTATTACCTGTGTCTACTATTTAGGCGGAATACCTTCACCCATTTTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGAATCCGGACAAAATAGATGA

Coding sequence (CDS)

ATGGAAGAAGGAACTGAGAAGAAATATTCTCTTATTACCTGTGTCTACTATTTAGGCGGAATACCTTCACCCATTTTGACTAAGAAACTGAAAGAAACGGAGGGGACTAAACAGGAACAAGAGGGATCTACCGAAGAAGATACTTCTCCTTCCCTTTGTTTCAGAAGAAAAGGAGAATCCGGACAAAATAGATGA

Protein sequence

MEEGTEKKYSLITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRKGESGQNR
Homology
[Close]
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match: TI214_MORIN (Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-11
Identity = 40/64 (62.50%), Postives = 40/64 (62.50%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETE------------------GTKQEQEGSTEEDTSPSLC 58
           ITCVYYLG IPSPILTKKLKETE                  GTKQEQEGSTEED SPSL 
Sbjct: 225 ITCVYYLGRIPSPILTKKLKETEERGESEEERDVEKTSETKGTKQEQEGSTEEDPSPSLF 284

[Close]
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match: TI214_COFAR (Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 39/74 (52.70%), Postives = 42/74 (56.76%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKET-----------------------EGTKQEQEGSTEEDT 63
           ITCVYYLG IPSPILTKKLKET                       +GTKQEQEGSTEED 
Sbjct: 228 ITCVYYLGRIPSPILTKKLKETSKTEEGVESEEEGDVEIETTSEMKGTKQEQEGSTEEDP 287

[Close]
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-09
Identity = 36/69 (52.17%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLK-----------------------ETEGTKQEQEGSTEEDT 58
           ITCVYYLG +P+PI+TKKLK                       ET+GTKQEQE STEED 
Sbjct: 228 ITCVYYLGRMPAPIVTKKLKETSKTEERGESEEERDVEIETTSETKGTKQEQERSTEEDP 287

[Close]
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match: TI214_DAUCA (Protein TIC 214 OS=Daucus carota GN=TIC214 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-09
Identity = 37/67 (55.22%), Postives = 38/67 (56.72%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLK---------------------ETEGTKQEQEGSTEEDTSP 58
           ITCVYYLG IPSPI TKKL                      ET+GTKQEQEGSTEED SP
Sbjct: 228 ITCVYYLGRIPSPIFTKKLNPQTEEGWESEEETDVEIETASETKGTKQEQEGSTEEDPSP 287

[Close]
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match: TI214_VITVI (Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-09
Identity = 37/69 (53.62%), Postives = 39/69 (56.52%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLK-----------------------ETEGTKQEQEGSTEEDT 58
           ITCVYYLG IPSPILTKK+K                       ET+GTKQEQE STEED 
Sbjct: 231 ITCVYYLGRIPSPILTKKMKETSETEERGESEEETDVEIERTSETKGTKQEQERSTEEDP 290

[Close]
BLAST of CmaCh00G002120 vs. TrEMBL
Match: A0A0S2IGK8_CUCPE (Uncharacterized protein OS=Cucurbita pepo subsp. pepo PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. TrEMBL
Match: A0A0S2IFV0_9ROSI (Ycf1 OS=Cucurbita okeechobeensis GN=ycf1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. TrEMBL
Match: A0A0S2IHC9_CUCPE (Ycf1 OS=Cucurbita pepo subsp. ovifera GN=ycf1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. TrEMBL
Match: A0A0S2IEM6_9ROSI (Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. TrEMBL
Match: A0A0S2IG06_CUCMO (Uncharacterized protein OS=Cucurbita moschata PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-10
Identity = 36/51 (70.59%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLK---ETEGTKQEQEGSTEEDTSPSLCFRRKGE 60
           ITCVYYLG IPSPI TKKLK   ET GTKQ+QE STEE   PSL F  +GE
Sbjct: 234 ITCVYYLGRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSL-FSEEGE 283

[Close]
BLAST of CmaCh00G002120 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 60.8 bits (146), Expect = 3.4e-10
Identity = 36/51 (70.59%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLK---ETEGTKQEQEGSTEEDTSPSLCFRRKGE 60
           ITCVYYLG IPSPI TKKLK   ET GTKQ+QE STEE   PSL F  +GE
Sbjct: 234 ITCVYYLGRIPSPIFTKKLKGTSETGGTKQDQEVSTEEAPFPSL-FSEEGE 283

[Close]
BLAST of CmaCh00G002120 vs. NCBI nr
Match: gi|952954690|gb|ALO22049.1| (hypothetical protein (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. NCBI nr
Match: gi|952955046|gb|ALO22400.1| (Ycf1 (plastid) [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. NCBI nr
Match: gi|952955287|gb|ALO22637.1| (Ycf1 (plastid) [Cucurbita pepo subsp. ovifera])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. NCBI nr
Match: gi|952955401|gb|ALO22749.1| (Ycf1 (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

[Close]
BLAST of CmaCh00G002120 vs. NCBI nr
Match: gi|952955245|gb|ALO22596.1| (hypothetical protein (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 1 

Query: 12  ITCVYYLGGIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLCFRRK 58
           ITCVYYLG IPSPILTKKLKETEGTKQEQEGSTEEDTSPSL    K
Sbjct: 222 ITCVYYLGRIPSPILTKKLKETEGTKQEQEGSTEEDTSPSLFSEEK 267

The following BLAST results are available for this feature:
BLAST of CmaCh00G002120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI214_MORIN2.9e-1162.50Protein TIC 214 OS=Morus indica GN=TIC214 PE=3 SV=1[more]
TI214_COFAR1.6e-0952.70Protein TIC 214 OS=Coffea arabica GN=TIC214 PE=3 SV=1[more]
TI214_BUXMI1.6e-0952.17Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1[more]
TI214_DAUCA2.1e-0955.22Protein TIC 214 OS=Daucus carota GN=TIC214 PE=3 SV=1[more]
TI214_VITVI4.7e-0953.62Protein TIC 214 OS=Vitis vinifera GN=TIC214 PE=3 SV=1[more]
BLAST of CmaCh00G002120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IGK8_CUCPE2.8e-1389.13Uncharacterized protein OS=Cucurbita pepo subsp. pepo PE=4 SV=1[more]
A0A0S2IFV0_9ROSI2.8e-1389.13Ycf1 OS=Cucurbita okeechobeensis GN=ycf1 PE=4 SV=1[more]
A0A0S2IHC9_CUCPE2.8e-1389.13Ycf1 OS=Cucurbita pepo subsp. ovifera GN=ycf1 PE=4 SV=1[more]
A0A0S2IEM6_9ROSI2.8e-1389.13Uncharacterized protein OS=Cucurbita ecuadorensis PE=4 SV=1[more]
A0A0S2IG06_CUCMO2.8e-1389.13Uncharacterized protein OS=Cucurbita moschata PE=4 SV=1[more]
BLAST of CmaCh00G002120 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.13.4e-1070.59ATCG01130.1 Ycf1 protein[more]
ATCG01000.13.4e-1070.59ATCG01000.1 Ycf1 protein[more]
BLAST of CmaCh00G002120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|952954690|gb|ALO22049.1|4.1e-1389.13hypothetical protein (plastid) [Cucurbita ecuadorensis][more]
gi|952955046|gb|ALO22400.1|4.1e-1389.13Ycf1 (plastid) [Cucurbita moschata][more]
gi|952955287|gb|ALO22637.1|4.1e-1389.13Ycf1 (plastid) [Cucurbita pepo subsp. ovifera][more]
gi|952955401|gb|ALO22749.1|4.1e-1389.13Ycf1 (plastid) [Cucurbita pepo subsp. pepo][more]
gi|952955245|gb|ALO22596.1|4.1e-1389.13hypothetical protein (plastid) [Cucurbita pepo subsp. fraterna][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002120.1CmaCh00G002120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 11..47
score: 3.
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 12..52
score: 2.6
NoneNo IPR availablePANTHERPTHR33163:SF3MEMBRANE PROTEIN YCF1-RELATEDcoord: 12..52
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G002120Cucurbita maxima (Rimu)cmacmaB000
CmaCh00G002120Cucurbita maxima (Rimu)cmacmaB003
CmaCh00G002120Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G002120Cucurbita moschata (Rifu)cmacmoB001