CmaCh00G002020 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G002020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem II CP43 reaction center protein
LocationCma_Chr00 : 13191417 .. 13193815 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGGTTACGGAGGGACCGGTTCGGTGTTGTAGGTTGGTCCGGGCTATTGCTCTTTCCTTGTGCCTATTGTGCCGTACGTAGGAGGGTGGTTTACAGGTACAACCTTTGTAACTTACTTAATGGTATACCTAACCATATTGGATTCGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACCCGCCGCTGTTAAGACAAACTCCTGCTAATAGTTTAGCACACTCTTTGTTCTTACTATGGGGTCGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTAGGTGGTCTGTGGACTTTACTTTCTTCGGACTAATAGGTGTTGAATCTTACACGGCAATTTCAATTTGGACTTGCTCGATCTGTTCAATTGAGACCTTATAATGATCATTCAATCGCCGGGACCAATTGCTGTTTTTCTTTCTGTATTCCTGATTTATCTCCACTAGGGCAGTCTAGTCTTCTGGTTGGTTCTTTGCCCCTAGTTTTGGTGTAGCTGCTATATTTCTATTCATCTTTTACAAGGATTTCATAATTGGACATTGAACCCCTTTCATATGATGTTGCAGGTGTATTGGGCGCGGCTATGCGTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGATGGTGATGGATGGTGCAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGTTTTCCAATAAAAAAGGGGTTATTACATTTCTTTCTCTTATTTGTACCAGTAACTGCTTTATGGATGAGTGCTTGCTCTTGGAGTAGTAGTTGGTTTGGCCCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACATACCTTACCTTATATTACCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTCTCTTTTGGAACTTTATCTTTAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGCTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGTAAGTAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTGAATTTCCTCTGCAGTATTGGGTTTTGACGGTATTTATCATGCACTTCTGGGACCCGATACCCTTGATCTTTTCCATTCTTCCGTTATGTGTGGAAAGATAGAAAGCAAATGACTACTTGGGTATTCACTAAATTAGGTATAGGTTTCTTCTAGTATTCAAAGCTCCTGATTTGGGGGGCGTATATGATACCTAGGCTCCGTGGGGAGGAGATCTAAGATCAATTACCAACTTTCACCTTAGCCCAAGTGTGATATTTGGGTATTTACTCAAATCTCTGGGGGAGAGAGAAGGATGGATTCTTAGTGTAGACGATTTGGAAGATATAGTTGGGGGGCATGTATGGTTAGTTAGGTTACATTTGTATACTTGGGGGAATTTAGCAGATCTTAACTAAACCGTTTCGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTGATAGTTTAGGTGCTTTATCCCGTTTTGGTTTTATTGCTTGTTCTTTTGTCTGGTTCAATAATACTGCTTATCCGAGTTAGTGAGTTTTAGGGGCCGACTGGACCCGAAGCTTCTCAAGCTCAACCAACCGTTTACGTTTCTAGTTAGAGACCTCTTGTAGCTAACGTTGGATTAAGGACCTACTCTACTACTGGTTTAGGTAAATATCTAATGCGTTCTCCGACCATAGAGAAAAGTCATTTTGAGGGGAGAGATAGAAAGAAAGAGACTATGTGCTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCAATAAGGGGTCCTAATCGTTTGGACTTGAGTAGGCAAAGATATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTAGGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC

mRNA sequence

ATGACTGGTTACGGAGGGACCGGTTCGGTGTTGTAGGTGTATTGGGCGCGGCTATGCGTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGATGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACATACCTTACCTTATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGCTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCAAAGATATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC

Coding sequence (CDS)

ATGCGTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGATGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACATACCTTACCTTATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGCTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCAAAGATATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC

Protein sequence

MRHGATVENPLFEDGNPWEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLPRPPSYYSRLGRRHWWAKIYNLGKTLRRIYDPCSFRFFKLRGWRVATEINAVNYVSPRSWLVTSHFLLGFPPFVIYGMQEGLGQLPQDLKKELIDL
Homology
[Close]
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match: PSBC_MAIZE (Photosystem II CP43 reaction center protein OS=Zea mays GN=psbC PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-14
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 70  PGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 129
           P + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 34  PWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 90

[Close]
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match: PSBC_PHAAO (Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. formosana GN=psbC PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 43/71 (60.56%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 62  LVVTKKQPPGFG---GNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK 121
           LV   ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Sbjct: 23  LVGRDQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEK 82

Query: 122 PIYEQRSIFLP 130
           P+YEQ  I LP
Sbjct: 83  PMYEQGLILLP 90

[Close]
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match: PSBC_TRACE (Photosystem II CP43 reaction center protein OS=Trachelium caeruleum GN=psbC PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 43/71 (60.56%), Postives = 48/71 (67.61%), Query Frame = 1 

Query: 62  LVVTKKQPPGFG---GNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK 121
           LV   ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Sbjct: 11  LVGRDQESTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEK 70

Query: 122 PIYEQRSIFLP 130
           P+YEQ  I LP
Sbjct: 71  PMYEQGLILLP 78

[Close]
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match: PSBC_HELAN (Photosystem II CP43 reaction center protein OS=Helianthus annuus GN=psbC PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 72  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 90

[Close]
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match: PSBC_PHYPA (Photosystem II CP43 reaction center protein OS=Physcomitrella patens subsp. patens GN=psbC PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 72  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 90

[Close]
BLAST of CmaCh00G002020 vs. TrEMBL
Match: A0A072TKG2_MEDTR (Photosystem II D2 protein OS=Medicago truncatula GN=MTR_0002s0420 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPG------- 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE++     PPG       
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVL-----PPGRDQETTG 367

Query: 79  ---FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFL 130
              + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I L
Sbjct: 368 FAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILL 415

[Close]
BLAST of CmaCh00G002020 vs. TrEMBL
Match: A0A0E0NEA4_ORYRU (Photosystem II D2 protein OS=Oryza rufipogon PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPG------- 78
           EDPEFETFY  T+N+LL +GIR WMAAQDQPHEN   LI PEE+     QPPG       
Sbjct: 308 EDPEFETFY--TKNILLNKGIRAWMAAQDQPHEN---LIFPEEV-----QPPGHDQETTG 367

Query: 79  ---FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFL 130
              + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I L
Sbjct: 368 FAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILL 415

[Close]
BLAST of CmaCh00G002020 vs. TrEMBL
Match: A0A0E0D3W6_9ORYZ (Photosystem II D2 protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPG------- 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE++     PPG       
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVL-----PPGRDQETTG 367

Query: 79  ---FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFL 130
              + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I L
Sbjct: 368 FAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILL 415

[Close]
BLAST of CmaCh00G002020 vs. TrEMBL
Match: A0A0V0IZL1_SOLCH (Photosystem II D2 protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.1e-27
Identity = 74/128 (57.81%), Postives = 82/128 (64.06%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELV--------------V 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE++               
Sbjct: 309 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNALXWXXXXXXX 368

Query: 79  TKKQPPGFG---GNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIY 130
              +  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+Y
Sbjct: 369 XXXETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMY 428

[Close]
BLAST of CmaCh00G002020 vs. TrEMBL
Match: A0A078EKT7_BRANA (Photosystem II CP43 reaction center protein OS=Brassica napus GN=BnaC09g27520D PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARL 78
           EDPEFETFY  T+N+LL E +    A +DQ      +                + GNARL
Sbjct: 196 EDPEFETFY--TKNILLNEAL----AGRDQETTGFAW----------------WAGNARL 255

Query: 79  IHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           I+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 256 INLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 281

[Close]
BLAST of CmaCh00G002020 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 72  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 36  WAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 90

[Close]
BLAST of CmaCh00G002020 vs. TAIR10
Match: ATCG00270.1 (ATCG00270.1 photosystem II reaction center protein D)

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-12
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELV 64
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE++
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVL 347

[Close]
BLAST of CmaCh00G002020 vs. NCBI nr
Match: gi|922328577|ref|XP_013443681.1| (photosystem II CP43 chlorophyll apoprotein [Medicago truncatula])

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 75/121 (61.98%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPG------- 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE++     PPG       
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVL-----PPGRDQETTG 367

Query: 79  ---FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFL 130
              + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I L
Sbjct: 368 FAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILL 415

[Close]
BLAST of CmaCh00G002020 vs. NCBI nr
Match: gi|308742593|gb|ADO33444.1| (photosystem II CP43 chlorophyll apoprotein (plastid) [Smilax china])

HSP 1 Score: 130.2 bits (326), Expect = 4.6e-27
Identity = 75/127 (59.06%), Postives = 82/127 (64.57%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEE-------------LVVT 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE             L   
Sbjct: 12  EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNLFNGTLALAGR 71

Query: 79  KKQPPGFG---GNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYE 130
            ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YE
Sbjct: 72  DQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYE 130

[Close]
BLAST of CmaCh00G002020 vs. NCBI nr
Match: gi|1012112032|ref|XP_015960230.1| (PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [Arachis duranensis])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 74/127 (58.27%), Postives = 82/127 (64.57%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEE-------------LVVT 78
           EDPEFETFY  T+N+LL EGIR WMAAQDQPHEN   LI PEE             L   
Sbjct: 308 EDPEFETFY--TKNILLNEGIRAWMAAQDQPHEN---LIFPEEVLPRGNLFNGTLALTGR 367

Query: 79  KKQPPGFG---GNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYE 130
            ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLF+VAHFVPEKP+YE
Sbjct: 368 DQETTGFAWWAGNARLINLSGKLLGA---HVAHAGLIVFWAGAMNLFKVAHFVPEKPMYE 426

[Close]
BLAST of CmaCh00G002020 vs. NCBI nr
Match: gi|674893348|emb|CDY39486.1| (BnaC03g60960D [Brassica napus])

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARL 78
           EDPEFETFY  T+N+LL E +    A +DQ      +                + GNARL
Sbjct: 202 EDPEFETFY--TKNILLNEAL----AGRDQETTGFAW----------------WAGNARL 261

Query: 79  IHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           I+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 262 INLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 287

[Close]
BLAST of CmaCh00G002020 vs. NCBI nr
Match: gi|674903579|emb|CDY29457.1| (BnaC05g32130D [Brassica napus])

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 1 

Query: 19  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARL 78
           EDPEFETFY  T+N+LL E +    A +DQ      +                + GNARL
Sbjct: 196 EDPEFETFY--TKNILLNEAL----AGRDQETTGFAW----------------WAGNARL 255

Query: 79  IHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP 130
           I+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Sbjct: 256 INLSGKLLGA---HVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLP 281

The following BLAST results are available for this feature:
BLAST of CmaCh00G002020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBC_MAIZE5.8e-1466.67Photosystem II CP43 reaction center protein OS=Zea mays GN=psbC PE=1 SV=1[more]
PSBC_PHAAO1.3e-1360.56Photosystem II CP43 reaction center protein OS=Phalaenopsis aphrodite subsp. for... [more]
PSBC_TRACE1.3e-1360.56Photosystem II CP43 reaction center protein OS=Trachelium caeruleum GN=psbC PE=3... [more]
PSBC_HELAN2.2e-1367.24Photosystem II CP43 reaction center protein OS=Helianthus annuus GN=psbC PE=3 SV... [more]
PSBC_PHYPA2.2e-1367.24Photosystem II CP43 reaction center protein OS=Physcomitrella patens subsp. pate... [more]
BLAST of CmaCh00G002020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A072TKG2_MEDTR1.7e-2861.98Photosystem II D2 protein OS=Medicago truncatula GN=MTR_0002s0420 PE=3 SV=1[more]
A0A0E0NEA4_ORYRU1.7e-2861.98Photosystem II D2 protein OS=Oryza rufipogon PE=3 SV=1[more]
A0A0E0D3W6_9ORYZ1.7e-2861.98Photosystem II D2 protein OS=Oryza meridionalis PE=3 SV=1[more]
A0A0V0IZL1_SOLCH7.1e-2757.81Photosystem II D2 protein OS=Solanum chacoense PE=3 SV=1[more]
A0A078EKT7_BRANA3.3e-1650.45Photosystem II CP43 reaction center protein OS=Brassica napus GN=BnaC09g27520D P... [more]
BLAST of CmaCh00G002020 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.11.2e-1467.24ATCG00280.1 photosystem II reaction center protein C[more]
ATCG00270.19.8e-1273.33ATCG00270.1 photosystem II reaction center protein D[more]
BLAST of CmaCh00G002020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922328577|ref|XP_013443681.1|2.4e-2861.98photosystem II CP43 chlorophyll apoprotein [Medicago truncatula][more]
gi|308742593|gb|ADO33444.1|4.6e-2759.06photosystem II CP43 chlorophyll apoprotein (plastid) [Smilax china][more]
gi|1012112032|ref|XP_015960230.1|1.3e-2658.27PREDICTED: LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like... [more]
gi|674893348|emb|CDY39486.1|4.7e-1650.45BnaC03g60960D [Brassica napus][more]
gi|674903579|emb|CDY29457.1|4.7e-1650.45BnaC05g32130D [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G002020.1CmaCh00G002020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 72..130
score: 3.
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 171..201
score: 6.02E-5coord: 72..130
score: 2.09
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 70..129
score: 3.2
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 70..129
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G002020Cucurbita maxima (Rimu)cmacmaB003
CmaCh00G002020Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G002020Cucurbita moschata (Rifu)cmacmoB001