CmaCh00G002000 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G002000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Maturase K
Location	Cma_Chr00 : 13046569 .. 13047101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAAAATTCATTTCTAATAGATAATGCTATTAAAAAAATCGATACACTTGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCAAATTTTTGTAATGTGTTAGGGCATCACATTAATAAGCCGACCGGGATCGATTCGTTGGGTTTTTCTATTATTGATCGATTTGTGCGTATATCCAGAAATCTTTCTCATTATTACAGAGGATCCTCAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAAATAAAAAAAATAAATAATTTGTATCGAATCCCGTATATACTTCGCCTTTCTTGTTTTAAAACTTTGGCTCGTAAACACAAAAGTACTGTACGCATTCTTTTTAAAAGGTTAAATTCGCAATTATTGGAAGAATTCTTTACCGAGCAAGAACAGATTCTTTCTTTGATCTTTCCAAGAGCTTCTTTTACTCTACAGAGGGTATATAGGGAAAATTTTGGTATTTGGATATTATTTGCATCAATTTGGCCAATCATTATTGGTTCTGACAAGTATATAA

mRNA sequence

ATGCTAGAAAATTCATTTCTAATAGATAATGCTATTAAAAAAATCGATACACTTGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCAAATTTTTGTAATGTGTTAGGGCATCACATTAATAAGCCGACCGGGATCGATTCGTTGGGTTTTTCTATTATTGATCGATTTGTTAAATTCGCAATTATTGGAAGAATTCTTTACCGAGCAAGAACAGATTCTTTCTTTGATCTTTCCAAGAGCTTCTTTTACTCTACAGAGGGGAAAATTTTGGTATTTGGATATTATTTGCATCAATTTGGCCAATCATTATTGGTTCTGACAAGTATATAA

Coding sequence (CDS)

ATGCTAGAAAATTCATTTCTAATAGATAATGCTATTAAAAAAATCGATACACTTGTTCCTATTATTACTCTGCTTGGATCATTGGCTAAAGCAAATTTTTGTAATGTGTTAGGGCATCACATTAATAAGCCGACCGGGATCGATTCGTTGGGTTTTTCTATTATTGATCGATTTGTTAAATTCGCAATTATTGGAAGAATTCTTTACCGAGCAAGAACAGATTCTTTCTTTGATCTTTCCAAGAGCTTCTTTTACTCTACAGAGGGGAAAATTTTGGTATTTGGATATTATTTGCATCAATTTGGCCAATCATTATTGGTTCTGACAAGTATATAA

Protein sequence

MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVKFAIIGRILYRARTDSFFDLSKSFFYSTEGKILVFGYYLHQFGQSLLVLTSI

Homology

[Close]

BLAST of CmaCh00G002000 vs. Swiss-Prot
Match: MATK_CUCSA (Maturase K OS=Cucumis sativus GN=matK PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-19
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA +K+DTLVPIITLL SLAKA FCNVLGH I+KPT IDS  F IIDRF++
Sbjct: 347 MLENSFLIDNATQKLDTLVPIITLLASLAKAKFCNVLGHPISKPTWIDSSDFDIIDRFLR 406

Query: 61  FA 63
            +
Sbjct: 407 IS 408

[Close]

BLAST of CmaCh00G002000 vs. Swiss-Prot
Match: MATK_VITVI (Maturase K OS=Vitis vinifera GN=matK PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLEN+F+IDNAIKK DT+VPII ++GSLAKA FCN LGH I+KP+  DS  + IIDRFV+
Sbjct: 345 MLENAFIIDNAIKKFDTIVPIIPIIGSLAKARFCNALGHPISKPSWADSSDYDIIDRFVR 404

[Close]

BLAST of CmaCh00G002000 vs. Swiss-Prot
Match: MATK_RHOSC (Maturase K OS=Rhodotypos scandens GN=matK PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-17
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSF++DNA+KK+DTLVPII L+GSLAK  FCN LGH I+K T  DS  F IIDRFV+
Sbjct: 349 MLENSFIMDNAMKKLDTLVPIIPLIGSLAKVKFCNALGHPISKSTWADSSDFDIIDRFVR 408

[Close]

BLAST of CmaCh00G002000 vs. Swiss-Prot
Match: MATK_HAMJA (Maturase K OS=Hamamelis japonica GN=matK PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSF+IDNAIKK D +VPII L+GSLAKA FCNVLGH I+KP   DS    IIDRFV+
Sbjct: 347 MLENSFIIDNAIKKFDIIVPIIPLIGSLAKAKFCNVLGHPISKPARADSSDSDIIDRFVR 406

[Close]

BLAST of CmaCh00G002000 vs. Swiss-Prot
Match: MATK_HAMMO (Maturase K OS=Hamamelis mollis GN=matK PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.1e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSF+IDNAIKK D +VPII L+GSLAKA FCNVLGH I+KP   DS    IIDRFV+
Sbjct: 347 MLENSFIIDNAIKKFDIIVPIIPLIGSLAKAKFCNVLGHPISKPARADSSDSDIIDRFVR 406

[Close]

BLAST of CmaCh00G002000 vs. TrEMBL
Match: G8CZ00_9ROSI (Maturase K (Fragment) OS=Cucurbita argyrosperma subsp. argyrosperma GN=matK PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

Query: 61  FA 63
            +
Sbjct: 371 IS 372

[Close]

BLAST of CmaCh00G002000 vs. TrEMBL
Match: G8CZ18_CUCPE (Maturase K (Fragment) OS=Cucurbita pepo var. ozarkana GN=matK PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 311 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 370

Query: 61  FA 63
            +
Sbjct: 371 IS 372

[Close]

BLAST of CmaCh00G002000 vs. TrEMBL
Match: A0A0S2IGI0_CUCPE (Maturase K OS=Cucurbita pepo var. ozarkana GN=matK PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

Query: 61  FA 63
            +
Sbjct: 406 IS 407

[Close]

BLAST of CmaCh00G002000 vs. TrEMBL
Match: I3P4F5_CUCPE (Maturase K (Fragment) OS=Cucurbita pepo GN=matK PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 120 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 179

Query: 61  FA 63
            +
Sbjct: 180 IS 181

[Close]

BLAST of CmaCh00G002000 vs. TrEMBL
Match: A0A0S2IDS2_9ROSI (Maturase K OS=Cucurbita cordata GN=matK PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

Query: 61  FA 63
            +
Sbjct: 406 IS 407

[Close]

BLAST of CmaCh00G002000 vs. TAIR10
Match: ATCG00040.1 (ATCG00040.1 maturase K)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDN   K+D+ +PI +++GSLAK  FCNVLGH I+K T  DS    I++RFV+
Sbjct: 369 MLENSFLIDNVRIKLDSKIPISSIIGSLAKDKFCNVLGHPISKATWTDSSDSDILNRFVR 428

[Close]

BLAST of CmaCh00G002000 vs. NCBI nr
Match: gi|111053129|gb|ABH03821.1| (maturase K, partial (chloroplast) [Cucurbita ficifolia])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 300 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 359

Query: 61  FA 63
            +
Sbjct: 360 IS 361

[Close]

BLAST of CmaCh00G002000 vs. NCBI nr
Match: gi|952954361|gb|ALO21725.1| (maturase K (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 346 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 405

Query: 61  FA 63
            +
Sbjct: 406 IS 407

[Close]

BLAST of CmaCh00G002000 vs. NCBI nr
Match: gi|1002159560|gb|AMM75946.1| (maturase K, partial (chloroplast) [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 187 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 246

Query: 61  FA 63
            +
Sbjct: 247 IS 248

[Close]

BLAST of CmaCh00G002000 vs. NCBI nr
Match: gi|340815586|gb|AEK77447.1| (maturase K [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 120 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 179

Query: 61  FA 63
            +
Sbjct: 180 IS 181

[Close]

BLAST of CmaCh00G002000 vs. NCBI nr
Match: gi|111053131|gb|ABH03822.1| (maturase K, partial (chloroplast) [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.0e-19
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1   MLENSFLIDNAIKKIDTLVPIITLLGSLAKANFCNVLGHHINKPTGIDSLGFSIIDRFVK 60
           MLENSFLIDNA KKIDTLVPIITLLGSLAKA FCNVLGH I+KPT IDS  FSIIDRFV+
Sbjct: 303 MLENSFLIDNATKKIDTLVPIITLLGSLAKAKFCNVLGHPISKPTWIDSSDFSIIDRFVR 362

Query: 61  FA 63
            +
Sbjct: 363 IS 364

The following BLAST results are available for this feature:

BLAST of CmaCh00G002000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MATK_CUCSA	3.0e-19	75.81	Maturase K OS=Cucumis sativus GN=matK PE=3 SV=1	[more]
MATK_VITVI	3.6e-17	68.33	Maturase K OS=Vitis vinifera GN=matK PE=3 SV=1	[more]
MATK_RHOSC	6.2e-17	70.00	Maturase K OS=Rhodotypos scandens GN=matK PE=3 SV=1	[more]
MATK_HAMJA	8.1e-17	71.67	Maturase K OS=Hamamelis japonica GN=matK PE=3 SV=1	[more]
MATK_HAMMO	8.1e-17	71.67	Maturase K OS=Hamamelis mollis GN=matK PE=3 SV=1	[more]

BLAST of CmaCh00G002000 vs. TrEMBL


Match Name	E-value	Identity	Description
G8CZ00_9ROSI	2.1e-19	83.87	Maturase K (Fragment) OS=Cucurbita argyrosperma subsp. argyrosperma GN=matK PE=4...	[more]
G8CZ18_CUCPE	2.1e-19	83.87	Maturase K (Fragment) OS=Cucurbita pepo var. ozarkana GN=matK PE=4 SV=1	[more]
A0A0S2IGI0_CUCPE	2.1e-19	83.87	Maturase K OS=Cucurbita pepo var. ozarkana GN=matK PE=3 SV=1	[more]
I3P4F5_CUCPE	2.1e-19	83.87	Maturase K (Fragment) OS=Cucurbita pepo GN=matK PE=4 SV=1	[more]
A0A0S2IDS2_9ROSI	2.1e-19	83.87	Maturase K OS=Cucurbita cordata GN=matK PE=3 SV=1	[more]

BLAST of CmaCh00G002000 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00040.1	2.0e-13	58.33	ATCG00040.1 maturase K	[more]

BLAST of CmaCh00G002000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|111053129\|gb\|ABH03821.1\|	3.0e-19	83.87	maturase K, partial (chloroplast) [Cucurbita ficifolia]	[more]
gi\|952954361\|gb\|ALO21725.1\|	3.0e-19	83.87	maturase K (plastid) [Cucurbita argyrosperma]	[more]
gi\|1002159560\|gb\|AMM75946.1\|	3.0e-19	83.87	maturase K, partial (chloroplast) [Cucurbita pepo]	[more]
gi\|340815586\|gb\|AEK77447.1\|	3.0e-19	83.87	maturase K [Cucurbita pepo]	[more]
gi\|111053131\|gb\|ABH03822.1\|	3.0e-19	83.87	maturase K, partial (chloroplast) [Cucurbita pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G002000.1	CmaCh00G002000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34811	FAMILY NOT NAMED	coord: 1..59 score: 8.8
None	No IPR available	PANTHER	PTHR34811:SF1	MATURASE K	coord: 1..59 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G002000	Cucurbita maxima (Rimu)	cmacmaB003
CmaCh00G002000	Cucurbita maxima (Rimu)	cmacmaB018
CmaCh00G002000	Cucurbita moschata (Rifu)	cmacmoB001