CmaCh00G001870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L14, chloroplastic
LocationCma_Chr00 : 12641377 .. 12641791 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCAACCTCAAACCTTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGTATTTGAATCATAACCTCAAACCTTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGTATTTGAATCATAGGGGCTAGTAAACAACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTTGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAATGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTTCCCGAGAACTAAGACAGTTAAATTTCACTAAAATAATTTGA

mRNA sequence

ATGATTCAACCTCAAACCTTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGGGCTAGTAAACAACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTTGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAATGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTTCCCGAGAACTAAGACAGTTAAATTTCACTAAAATAATTTGA

Coding sequence (CDS)

ATGATTCAACCTCAAACCTTTTTGAATGTAGCAGATAACAGTGGAGCCCGAGAATTGATGTGGGCTAGTAAACAACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGTTGTCCCAAATACACCTCTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGAGAAAATGGTATGATAATACGATATGATGACAATGCTGCAGTTGTTATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATTTCCCGAGAACTAAGACAGTTAAATTTCACTAAAATAATTTGA

Protein sequence

MIQPQTFLNVADNSGARELMWASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII
Homology
[Close]
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match: RK14_CUCSA (50S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-50
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-48
Identity = 101/115 (87.83%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.0e-48
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPN PLERSEV+RA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match: RK14_ILLOL (50S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS  RYAHIGDVIVAVIK+ VPN PLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNHRYAHIGDVIVAVIKEAVPNMPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTR+FGAI+RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 98/115 (85.22%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ +PNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR NG IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. TrEMBL
Match: A0A0S2IH88_CUCPE (Ribosomal protein L14 OS=Cucurbita pepo var. ozarkana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. TrEMBL
Match: A0A0S2IFY4_9ROSI (Ribosomal protein L14 OS=Cucurbita okeechobeensis subsp. martinezii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. TrEMBL
Match: W8E7S7_9ROSI (Ribosomal protein L14 OS=Cucumis hystrix GN=rpl14 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. TrEMBL
Match: A0A0S2IDR6_9ROSI (Ribosomal protein L14 OS=Cucurbita argyrosperma var. palmeri GN=rpl14 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. TrEMBL
Match: A0A0S2IFA0_CUCMO (Ribosomal protein L14 OS=Cucurbita moschata GN=rpl14 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. TAIR10
Match: ATCG00780.1 (ATCG00780.1 ribosomal protein L14)

HSP 1 Score: 191.8 bits (486), Expect = 2.2e-49
Identity = 98/115 (85.22%), Postives = 104/115 (90.43%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ +PNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR NG IIRYDDNAAVVIDQEGNPKGTR+FGAI RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. TAIR10
Match: AT5G46160.1 (AT5G46160.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 80.9 bits (198), Expect = 5.5e-16
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 1 

Query: 2   IQPQTFLNVADNSGARELMWASK---QRYAHIGDVIVAVIKKVVPNTPLERSEVIRAVIV 61
           IQ  T L V DNSGA+++M       ++ A +GD IVA +K+ +PN  +++  V+  V+V
Sbjct: 48  IQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVV 107

Query: 62  RTCKELKRENGMIIRYDDNAAVVIDQ-------EGNPKGTRIFGAISRELRQLNFTKII 111
           R   +  R +G  +R+DDNA V++D        +  P GTR+FG +  ELR+    KI+
Sbjct: 108 RAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKIL 166

[Close]
BLAST of CmaCh00G001870 vs. TAIR10
Match: AT1G04480.1 (AT1G04480.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1 

Query: 8   LNVADNSGARELMWASKQRY---------AHIGDVIVAVIKKVVPNTPLERSEVIRAVIV 67
           +N ADN+GA+ L   S +           A +GD+++A +KK  P+    R +V+ AVIV
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQL 105
           R  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128

[Close]
BLAST of CmaCh00G001870 vs. TAIR10
Match: AT2G33370.1 (AT2G33370.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1 

Query: 8   LNVADNSGARELMWASKQRY---------AHIGDVIVAVIKKVVPNTPLERSEVIRAVIV 67
           +N ADN+GA+ L   S +           A +GD+++A +KK  P+    R +V+ AVIV
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQL 105
           R  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128

[Close]
BLAST of CmaCh00G001870 vs. TAIR10
Match: AT3G04400.1 (AT3G04400.1 Ribosomal protein L14p/L23e family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1 

Query: 8   LNVADNSGARELMWASKQRY---------AHIGDVIVAVIKKVVPNTPLERSEVIRAVIV 67
           +N ADN+GA+ L   S +           A +GD+++A +KK  P+    R +V+ AVIV
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 85

Query: 68  RTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQL 105
           R  K  +R++G+ + ++DNA V+++ +G  KG+ I G I +E   L
Sbjct: 86  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128

[Close]
BLAST of CmaCh00G001870 vs. NCBI nr
Match: gi|68164840|ref|YP_247636.1| (ribosomal protein L14 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 6.7e-48
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIKK VPNTPLERSEVIRA
Sbjct: 1   MIQPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. NCBI nr
Match: gi|817527840|ref|YP_009136515.1| (ribosomal protein L14 (chloroplast) [Prunus padus])

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-47
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT+LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPNTPLERSEVIRA
Sbjct: 1   MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. NCBI nr
Match: gi|317046209|ref|YP_004072498.1| (ribosomal protein L14 [Corynocarpus laevigata])

HSP 1 Score: 194.9 bits (494), Expect = 7.4e-47
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQ+ LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPNTPLERSEVIRA
Sbjct: 1   MIQPQSHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKII
Sbjct: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKII 115

[Close]
BLAST of CmaCh00G001870 vs. NCBI nr
Match: gi|313199738|ref|YP_004021352.1| (ribosomal protein L14 [Theobroma cacao])

HSP 1 Score: 194.9 bits (494), Expect = 7.4e-47
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRVIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIV 115

[Close]
BLAST of CmaCh00G001870 vs. NCBI nr
Match: gi|313183858|ref|YP_004021701.1| (ribosomal protein L14 [Prunus persica])

HSP 1 Score: 194.9 bits (494), Expect = 7.4e-47
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 1 

Query: 1   MIQPQTFLNVADNSGARELMW-----ASKQRYAHIGDVIVAVIKKVVPNTPLERSEVIRA 60
           MIQPQT LNVADNSGARELM      AS +RYAHIGDVIVAVIK+ VPNTPLERSEVIRA
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRA 60

Query: 61  VIVRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAISRELRQLNFTKII 111
           VIVRTCKELKR+NGMIIRYDDNAAVVIDQEGNPKGTRIFGAI+RELRQLNFTKI+
Sbjct: 61  VIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIV 115

The following BLAST results are available for this feature:
BLAST of CmaCh00G001870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK14_CUCSA4.2e-5090.4350S ribosomal protein L14, chloroplastic OS=Cucumis sativus GN=rpl14 PE=2 SV=1[more]
RK14_CARPA1.3e-4887.8350S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1[more]
RK14_COFAR3.0e-4886.0950S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1[more]
RK14_ILLOL3.9e-4886.0950S ribosomal protein L14, chloroplastic OS=Illicium oligandrum GN=rpl14 PE=3 SV... [more]
RK14_AETCO3.9e-4885.2250S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3... [more]
BLAST of CmaCh00G001870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S2IH88_CUCPE4.7e-4890.43Ribosomal protein L14 OS=Cucurbita pepo var. ozarkana GN=rpl14 PE=3 SV=1[more]
A0A0S2IFY4_9ROSI4.7e-4890.43Ribosomal protein L14 OS=Cucurbita okeechobeensis subsp. martinezii GN=rpl14 PE=... [more]
W8E7S7_9ROSI4.7e-4890.43Ribosomal protein L14 OS=Cucumis hystrix GN=rpl14 PE=3 SV=1[more]
A0A0S2IDR6_9ROSI4.7e-4890.43Ribosomal protein L14 OS=Cucurbita argyrosperma var. palmeri GN=rpl14 PE=3 SV=1[more]
A0A0S2IFA0_CUCMO4.7e-4890.43Ribosomal protein L14 OS=Cucurbita moschata GN=rpl14 PE=3 SV=1[more]
BLAST of CmaCh00G001870 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00780.12.2e-4985.22ATCG00780.1 ribosomal protein L14[more]
AT5G46160.15.5e-1636.97 Ribosomal protein L14p/L23e family protein[more]
AT1G04480.11.2e-1034.91 Ribosomal protein L14p/L23e family protein[more]
AT2G33370.11.2e-1034.91 Ribosomal protein L14p/L23e family protein[more]
AT3G04400.11.2e-1034.91 Ribosomal protein L14p/L23e family protein[more]
BLAST of CmaCh00G001870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|68164840|ref|YP_247636.1|6.7e-4890.43ribosomal protein L14 [Cucumis sativus][more]
gi|817527840|ref|YP_009136515.1|2.5e-4787.83ribosomal protein L14 (chloroplast) [Prunus padus][more]
gi|317046209|ref|YP_004072498.1|7.4e-4788.70ribosomal protein L14 [Corynocarpus laevigata][more]
gi|313199738|ref|YP_004021352.1|7.4e-4787.83ribosomal protein L14 [Theobroma cacao][more]
gi|313183858|ref|YP_004021701.1|7.4e-4787.83ribosomal protein L14 [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000218Ribosomal_L14P
IPR005745Ribosomal_L14P_bac-type
IPR019972Ribosomal_L14P_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001870.1CmaCh00G001870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14PGENE3DG3DSA:2.40.150.20coord: 1..110
score: 1.8
IPR000218Ribosomal protein L14PHAMAPMF_01367Ribosomal_L14coord: 1..110
score: 18
IPR000218Ribosomal protein L14PPANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 1..110
score: 9.2
IPR000218Ribosomal protein L14PPFAMPF00238Ribosomal_L14coord: 1..110
score: 1.5
IPR000218Ribosomal protein L14PSMARTSM01374Ribosomal_L14_2coord: 1..110
score: 2.7
IPR000218Ribosomal protein L14PunknownSSF50193Ribosomal protein L14coord: 1..110
score: 3.53
IPR005745Ribosomal protein L14P, bacterial-typeTIGRFAMsTIGR01067TIGR01067coord: 1..110
score: 4.3
IPR019972Ribosomal protein L14P, conserved sitePROSITEPS00049RIBOSOMAL_L14coord: 55..81
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001870Cucurbita maxima (Rimu)cmacmaB003
CmaCh00G001870Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G001870Cucurbita moschata (Rifu)cmacmoB001
CmaCh00G001870Cucurbita moschata (Rifu)cmacmoB002