CmaCh00G001810 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	Cma_Chr00 : 10675419 .. 10676283 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTTTCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCTATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCGCTCTTTCTCTTCTTAGCAAGAATTATTGCAGTTGGATAACGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGTGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCCGGAAATCTCTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTGGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACGTACTAAGGGGGATCTTTATACGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTGCCATATCTTTCATAGTGGGTTGGTTACACCTACAACTGAAATGGAAAGCGAGCCTTTCGTGGTTTCAAAATGCTGAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTCGGAGTCAGTTTCTTGGCTTGGACAGGCCATTTTCAGCCATGTCGTTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACACATTGCACATCCCCAAGGATTAGGACCACTTTAG

mRNA sequence

ATGAAAAGTTTCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCTATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCGCTCTTTCTCTTCTTAGCAAGAATTATTGCAGTTGGATAACGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGTGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCCGGAAATCTCTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTGGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGTGGGTTGGTTACACCTACAACTGAAATGGAAAGCGAGCCTTTCGTGGTTTCAAAATGCTGAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTCGGAGTCAGTTTCTTGGCTTGGACAGGCCATTTTCAGCCATGTCGTTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACACATTGCACATCCCCAAGGATTAGGACCACTTTAG

Coding sequence (CDS)

ATGAAAAGTTTCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCTATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCGCTCTTTCTCTTCTTAGCAAGAATTATTGCAGTTGGATAACGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGTGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCCGGAAATCTCTTTCATGTAGCTTGGCAAGGCAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTGGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGTGGGTTGGTTACACCTACAACTGAAATGGAAAGCGAGCCTTTCGTGGTTTCAAAATGCTGAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTCGGAGTCAGTTTCTTGGCTTGGACAGGCCATTTTCAGCCATGTCGTTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACACATTGCACATCCCCAAGGATTAGGACCACTTTAG

Protein sequence

MKSFSCYSQPRALIEHCPRTCCRSNLSITLPSGWNCHNIGALSLLSKNYCSWITARRICIMALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFASFAFRAISKNLSVYTSGNLFHVAWQGNFEAWVQARPFPCKTYLQFGILGQPEKLLLEGVLPVNIAYSVGWLHLQLKWKASLSWFQNAESRLNHHLSGLFIRSQFLGLDRPFSAMSLFLHPGENMLEEFLRHIAHPQGLGPL

Homology

[Close]

BLAST of CmaCh00G001810 vs. Swiss-Prot
Match: PSAB_GLOVI (Photosystem I P700 chlorophyll a apoprotein A2 OS=Gloeobacter violaceus (strain PCC 7421) GN=psaB PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 96/228 (42.11%), Postives = 117/228 (51.32%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP+FSQ LAQDPTTR IW+GIAT  DFE HD +TEE LY  LFA+ F   AI   +
Sbjct: 1   MATRFPKFSQDLAQDPTTRRIWYGIATAHDFESHDGMTEESLYQKLFATHFGHLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWVQ----ARPFPCKTYLQFGILGQPEKLLLEGVL-PVNIAY 180
            +++SGNLFH+AWQGNFE WV       P     +      G  E    EG   PVN AY
Sbjct: 61  FLWSSGNLFHIAWQGNFEQWVSNPTGVVPIAHAIWDPHFGKGAVEAFTPEGGAGPVNAAY 120

Query: 181 S---------------------------------VGWLHLQLKWKASLSWFQNAESRLNH 240
           S                                  GWLHLQ +++ SL+WF+NAESRLNH
Sbjct: 121 SGLYYLYYTLGMRFNSDLYQGSIFLMVLATVFLIAGWLHLQPRFRPSLAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGP 249
           HLS LF  S  L        +++    G+ +    FL  + HP GL P
Sbjct: 181 HLSALFGVSS-LAFAGHMIHVAIPAARGQRVDWSNFLNTLPHPAGLAP 224

[Close]

BLAST of CmaCh00G001810 vs. Swiss-Prot
Match: PSAB_SYNS9 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC9902) GN=psaB PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-34
Identity = 95/228 (41.67%), Postives = 121/228 (53.07%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP FSQGLAQDPTTR IW+GIAT  DFE HD +TEERLY  LF++ F   AI   +
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWV----QARPFP----------------------------- 180
            ++ SGNLFH+AWQGNFE WV      RP                               
Sbjct: 61  GLWVSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAY 120

Query: 181 CKTYLQFGILGQPEKL-LLEGVLPVNI----AYSVGWLHLQLKWKASLSWFQNAESRLNH 240
              Y  F  +G      L +G + + I    A   GWLHLQ K++ SL+WF+NAESRLNH
Sbjct: 121 SGLYHWFYTIGMTTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGP 249
           HL+ LF  S  +        +++    G+++  + FL  + HP GLGP
Sbjct: 181 HLAVLFGFSS-IAWTGHLVHVAIPESRGQHVGWDNFLSVMPHPAGLGP 224

[Close]

BLAST of CmaCh00G001810 vs. Swiss-Prot
Match: PSAB_SYNSC (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC9605) GN=psaB PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.5e-34
Identity = 94/227 (41.41%), Postives = 113/227 (49.78%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP FSQGLAQDPTTR IW+GIAT  DFE HD +TEERLY  LF++ F   AI   +
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWV----QARPFP----------------------------- 180
            ++ SGNLFH+AWQGNFE WV      RP                               
Sbjct: 61  GLWVSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAY 120

Query: 181 CKTYLQFGILGQPEKL-LLEGVLPVNI----AYSVGWLHLQLKWKASLSWFQNAESRLNH 240
              Y  F  +G      L +G + + I    A   GWLHLQ K++ SL+WF+NAESRLNH
Sbjct: 121 SGLYHWFYTIGMKTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENMLEEFLRHIAHPQGLGP 249
           HL+ LF  S                       + FL  + HP GLGP
Sbjct: 181 HLAVLFGFSSIAWTGHLVHVAIPEARGQHVGWDNFLNVLPHPAGLGP 224

[Close]

BLAST of CmaCh00G001810 vs. Swiss-Prot
Match: PSAB_SYNPX (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain WH8102) GN=psaB PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-34
Identity = 93/228 (40.79%), Postives = 112/228 (49.12%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP FSQGLAQDPTTR IW+GIAT  DFE HD +TEERLY  LF++ F   AI   +
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEERLYQKLFSTHFGHLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWV----QARPFP------------CKTYLQFGILGQPEKLL 180
            ++ SGNLFH+AWQGNFE WV      RP                 + Q G    P  + 
Sbjct: 61  GLWVSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGA-SSPVNIA 120

Query: 181 LEGV--------LPVNI---------------AYSVGWLHLQLKWKASLSWFQNAESRLN 240
             G+        +  N                A   GWLHLQ K++ SL+WF+NAESRLN
Sbjct: 121 FSGLYHWWYTIGMRTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLN 180

Query: 241 HHLSGLFIRSQFLGLDRPFSAMSLFLHPGENMLEEFLRHIAHPQGLGP 249
           HHL+ LF  S                       + FL  + HP GLGP
Sbjct: 181 HHLAVLFGFSSIAWTGHLVHVAIPEARGQHVGWDNFLNVLPHPAGLGP 224

[Close]

BLAST of CmaCh00G001810 vs. Swiss-Prot
Match: PSAB_SYNPW (Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain WH7803) GN=psaB PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-34
Identity = 94/228 (41.23%), Postives = 121/228 (53.07%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP FSQGLAQDPTTR IW+GIAT  DFE HD +TEE+LY  LF++ F   AI   +
Sbjct: 1   MATKFPSFSQGLAQDPTTRRIWYGIATAHDFESHDGMTEEKLYQKLFSTHFGHLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWV----QARPFP----------------------------- 180
            ++ SGNLFH+AWQGNFE WV      RP                               
Sbjct: 61  GLWVSGNLFHIAWQGNFEQWVADPLHVRPIAHAIWDPHFGQGAIDAFTQAGASSPVNIAY 120

Query: 181 CKTYLQFGILGQPEKL-LLEGVLPVNI----AYSVGWLHLQLKWKASLSWFQNAESRLNH 240
              Y  F  +G      L +G + + I    A   GWLHLQ K++ SL+WF+NAESRLNH
Sbjct: 121 SGLYHWFYTIGMTTNAELYQGSIFMMILSAWALFAGWLHLQPKFRPSLAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGP 249
           HL+ LF  S  +        +++    G+++  + FL  + HP GLGP
Sbjct: 181 HLAVLFGFSS-IAWTGHLVHVAIPESRGQHVGWDNFLNVMPHPAGLGP 224

[Close]

BLAST of CmaCh00G001810 vs. TrEMBL
Match: M0UB86_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 103/192 (53.65%), Postives = 116/192 (60.42%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWVQ--ARPFPCKTYLQFGILGQPEKLLLEGVLPVNIAYSVG 180
            ++TSGNLFHVAWQGNFE+W+Q      P    +     GQP    +E           G
Sbjct: 61  FLWTSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDPHFGQP---AVEA-----FTRGAG 120

Query: 181 WLHLQLKWKASLSWFQNAESRLNHHLSGLFIRSQFLGLDRPFSAMSLFLHPGENMLEEFL 240
           WLHLQ KWK S+SWF+NAESRLNHHLSGLF  S                         FL
Sbjct: 121 WLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPGSRGQYVRWNNFL 180

Query: 241 RHIAHPQGLGPL 250
             + +PQGLGPL
Sbjct: 181 DVLPYPQGLGPL 181

[Close]

BLAST of CmaCh00G001810 vs. TrEMBL
Match: A7M900_CUSGR (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta gronovii GN=psaB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 107/229 (46.72%), Postives = 128/229 (55.90%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           M L FP+FSQ LAQDPTTR IWFGIAT  DFE H++ITEERLY ++FAS F   AI   +
Sbjct: 1   MVLRFPKFSQSLAQDPTTRRIWFGIATAHDFESHNEITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWVQ--ARPFPCKTYLQFGILGQP--EKLLLEGVL-PVNIAY 180
            ++TSGNLFHVAWQGNFE+WVQ      P    +     GQP  E     G + PVNIAY
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVETFTRGGAVDPVNIAY 120

Query: 181 S---------------------------------VGWLHLQLKWKASLSWFQNAESRLNH 240
           S                                  GWLHLQ KWK +++WF+NAESRLNH
Sbjct: 121 SGVYQWWYTIGLRTKEDLYTGAFFLFFISAISLIAGWLHLQPKWKPNIAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           HL+GLF  S  L        +++    GE +     L  + HPQGLGPL
Sbjct: 181 HLAGLFGVSS-LAWTGHLVHVAIPASRGEYVRWNNLLDQLPHPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. TrEMBL
Match: V9P7I5_VIVMA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Viviania marifolia GN=psaB PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 110/231 (47.62%), Postives = 131/231 (56.71%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFE-----------------AWVQARPFPCKTYLQFGILGQPEKL 180
            ++TSGNLFHVAWQGNFE                      +P   +T+ + G LG P  +
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQP-AVETFTRGGALG-PVNI 120

Query: 181 LLEGV--------LPVN---------------IAYSVGWLHLQLKWKASLSWFQNAESRL 240
              GV        L  N               ++ + GWLHLQ KWK S+SWF+NAESRL
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLTAGWLHLQPKWKPSVSWFKNAESRL 180

Query: 241 NHHLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           NHHLSGLF  S  L        +++    GE++    FL  + HPQGLGPL
Sbjct: 181 NHHLSGLFGISS-LAWTGHLVHVAIPGSRGESVRWNNFLSVLPHPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. TrEMBL
Match: A0A0S0ZIZ7_9ASTE (PsaB (Fragment) OS=Nothapodytes montana GN=psaB PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.9e-37
Identity = 98/185 (52.97%), Postives = 107/185 (57.84%), Query Frame = 1


Query: 62  ALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNLS 121
           AL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   + 
Sbjct: 1   ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---IF 60

Query: 122 VYTSGNLFHVAWQGNFEAWVQ----ARPFPCKTYLQFGILGQPEKLLLEGVL-PVNIAYS 181
           ++TSGNLFHVAWQGNFE+WVQ     RP     +         E     G L PVNIAYS
Sbjct: 61  LWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQSAVEAFTRGGALGPVNIAYS 120

Query: 182 ---------------------------------VGWLHLQLKWKASLSWFQNAESRLNHH 208
                                               LHLQ KWK S+SWF+NAESRLNHH
Sbjct: 121 GVYQWWYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHLQPKWKPSVSWFKNAESRLNHH 180

[Close]

BLAST of CmaCh00G001810 vs. TrEMBL
Match: A0A0A6Z6X6_STAER (Photosystem I P700 chlorophyll a apoprotein A2 OS=Stangeria eriopus GN=psaB PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 106/229 (46.29%), Postives = 131/229 (57.21%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP+FSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY  +FAS F   AI   +
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFE-----------------------AWVQA-----RPFPCK--- 180
            ++TSGNLFHVAWQGNFE                         V+A      P P     
Sbjct: 61  FMWTSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAH 120

Query: 181 --TYLQFGILG-QPEKLLLEG---VLPVNIAYSV-GWLHLQLKWKASLSWFQNAESRLNH 240
              Y  +  +G +  + L  G   +L ++  + + GWLHLQ KWK S+SWF+NAESRLNH
Sbjct: 121 SGVYQWWYTIGLRTNEDLYTGALFLLSISAIFLIAGWLHLQPKWKPSVSWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           HLSGLF  S  L        +++    GE++  + FL  + +PQGLGPL
Sbjct: 181 HLSGLFGVSS-LAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. TAIR10
Match: ATCG00340.1 (ATCG00340.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 132.1 bits (331), Expect = 4.7e-31
Identity = 76/121 (62.81%), Postives = 82/121 (67.77%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWVQ--ARPFPCKTYLQFGILGQP--EKLLLEGVL-PVNIAY 176
            ++TSGNLFHVAWQGNFE WVQ      P    +     GQP  E     G L PVNIAY
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAY 118

[Close]

BLAST of CmaCh00G001810 vs. NCBI nr
Match: gi|156618906|ref|YP_001430042.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta gronovii])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 107/229 (46.72%), Postives = 128/229 (55.90%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           M L FP+FSQ LAQDPTTR IWFGIAT  DFE H++ITEERLY ++FAS F   AI   +
Sbjct: 1   MVLRFPKFSQSLAQDPTTRRIWFGIATAHDFESHNEITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFEAWVQ--ARPFPCKTYLQFGILGQP--EKLLLEGVL-PVNIAY 180
            ++TSGNLFHVAWQGNFE+WVQ      P    +     GQP  E     G + PVNIAY
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQPAVETFTRGGAVDPVNIAY 120

Query: 181 S---------------------------------VGWLHLQLKWKASLSWFQNAESRLNH 240
           S                                  GWLHLQ KWK +++WF+NAESRLNH
Sbjct: 121 SGVYQWWYTIGLRTKEDLYTGAFFLFFISAISLIAGWLHLQPKWKPNIAWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           HL+GLF  S  L        +++    GE +     L  + HPQGLGPL
Sbjct: 181 HLAGLFGVSS-LAWTGHLVHVAIPASRGEYVRWNNLLDQLPHPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. NCBI nr
Match: gi|570880109|ref|YP_008994394.1| (photosystem I P700 apoprotein A2 (chloroplast) (chloroplast) [Viviania marifolia])

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 110/231 (47.62%), Postives = 131/231 (56.71%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFE-----------------AWVQARPFPCKTYLQFGILGQPEKL 180
            ++TSGNLFHVAWQGNFE                      +P   +T+ + G LG P  +
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHFGQP-AVETFTRGGALG-PVNI 120

Query: 181 LLEGV--------LPVN---------------IAYSVGWLHLQLKWKASLSWFQNAESRL 240
              GV        L  N               ++ + GWLHLQ KWK S+SWF+NAESRL
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLTAGWLHLQPKWKPSVSWFKNAESRL 180

Query: 241 NHHLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           NHHLSGLF  S  L        +++    GE++    FL  + HPQGLGPL
Sbjct: 181 NHHLSGLFGISS-LAWTGHLVHVAIPGSRGESVRWNNFLSVLPHPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. NCBI nr
Match: gi|937633648|gb|ALI90404.1| (PsaB, partial (chloroplast) [Nothapodytes montana])

HSP 1 Score: 163.7 bits (413), Expect = 4.1e-37
Identity = 98/185 (52.97%), Postives = 107/185 (57.84%), Query Frame = 1


Query: 62  ALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNLS 121
           AL FPRFSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY ++FAS F   AI   + 
Sbjct: 1   ALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---IF 60

Query: 122 VYTSGNLFHVAWQGNFEAWVQ----ARPFPCKTYLQFGILGQPEKLLLEGVL-PVNIAYS 181
           ++TSGNLFHVAWQGNFE+WVQ     RP     +         E     G L PVNIAYS
Sbjct: 61  LWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHFGQSAVEAFTRGGALGPVNIAYS 120

Query: 182 ---------------------------------VGWLHLQLKWKASLSWFQNAESRLNHH 208
                                               LHLQ KWK S+SWF+NAESRLNHH
Sbjct: 121 GVYQWWYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHLQPKWKPSVSWFKNAESRLNHH 180

[Close]

BLAST of CmaCh00G001810 vs. NCBI nr
Match: gi|756877062|ref|YP_009113853.1| (photosystem I P700 apoprotein A2 (chloroplast) [Stangeria eriopus])

HSP 1 Score: 159.5 bits (402), Expect = 7.8e-36
Identity = 106/229 (46.29%), Postives = 131/229 (57.21%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP+FSQGLAQDPTTR IWFGIAT  DFE HDDITEERLY  +FAS F   AI   +
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQKIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFE-----------------------AWVQA-----RPFPCK--- 180
            ++TSGNLFHVAWQGNFE                         V+A      P P     
Sbjct: 61  FMWTSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAPGPVNIAH 120

Query: 181 --TYLQFGILG-QPEKLLLEG---VLPVNIAYSV-GWLHLQLKWKASLSWFQNAESRLNH 240
              Y  +  +G +  + L  G   +L ++  + + GWLHLQ KWK S+SWF+NAESRLNH
Sbjct: 121 SGVYQWWYTIGLRTNEDLYTGALFLLSISAIFLIAGWLHLQPKWKPSVSWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           HLSGLF  S  L        +++    GE++  + FL  + +PQGLGPL
Sbjct: 181 HLSGLFGVSS-LAWTGHLVHVAIPESRGEHVRWDNFLNVLPYPQGLGPL 225

[Close]

BLAST of CmaCh00G001810 vs. NCBI nr
Match: gi|814071651|ref|YP_009121299.1| (photosystem I P700 apoprotein A2 (plastid) [Araucaria heterophylla])

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 104/229 (45.41%), Postives = 128/229 (55.90%), Query Frame = 1


Query: 61  MALGFPRFSQGLAQDPTTRGIWFGIATVPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MA  FP+FSQGLAQDPTTR IWFGIAT  DFE HDD+TEERLY  +FAS F   AI   +
Sbjct: 1   MASRFPKFSQGLAQDPTTRRIWFGIATAHDFESHDDMTEERLYQKIFASHFGQLAI---I 60

Query: 121 SVYTSGNLFHVAWQGNFE---------------------------AWVQA-RPFPCK--- 180
            ++TSGNLFHVAWQGNFE                           A+ Q   P P     
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVRDPLHVRPIAHAIWDPHFGQPAVEAFTQGGAPGPVNIAY 120

Query: 181 --TYLQFGILG-QPEKLLLEGVLPVNIAYSV----GWLHLQLKWKASLSWFQNAESRLNH 240
              Y  +  +G +  + L  G L +    ++    GWLHLQ +WK S+SWF+NAESRLNH
Sbjct: 121 SGVYQWWYTIGLRTNEELYTGALFLLFFSAIFLIAGWLHLQPQWKPSVSWFKNAESRLNH 180

Query: 241 HLSGLFIRSQFLGLDRPFSAMSLFLHPGENM-LEEFLRHIAHPQGLGPL 250
           HLSGLF  S  L        +++    GE++  + FL  + HPQGL PL
Sbjct: 181 HLSGLFGVSS-LAWTGHLVHVAIPESRGEHIRWDNFLNVLPHPQGLEPL 225

The following BLAST results are available for this feature:

BLAST of CmaCh00G001810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAB_GLOVI	1.1e-34	42.11	Photosystem I P700 chlorophyll a apoprotein A2 OS=Gloeobacter violaceus (strain ...	[more]
PSAB_SYNS9	2.5e-34	41.67	Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC99...	[more]
PSAB_SYNSC	2.5e-34	41.41	Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain CC96...	[more]
PSAB_SYNPX	4.3e-34	40.79	Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain WH81...	[more]
PSAB_SYNPW	4.3e-34	41.23	Photosystem I P700 chlorophyll a apoprotein A2 OS=Synechococcus sp. (strain WH78...	[more]

BLAST of CmaCh00G001810 vs. TrEMBL


Match Name	E-value	Identity	Description
M0UB86_MUSAM	1.1e-41	53.65	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A7M900_CUSGR	1.4e-39	46.72	Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta gronovii GN=psaB PE=3 ...	[more]
V9P7I5_VIVMA	1.2e-38	47.62	Photosystem I P700 chlorophyll a apoprotein A2 OS=Viviania marifolia GN=psaB PE=...	[more]
A0A0S0ZIZ7_9ASTE	2.9e-37	52.97	PsaB (Fragment) OS=Nothapodytes montana GN=psaB PE=4 SV=1	[more]
A0A0A6Z6X6_STAER	5.4e-36	46.29	Photosystem I P700 chlorophyll a apoprotein A2 OS=Stangeria eriopus GN=psaB PE=3...	[more]

BLAST of CmaCh00G001810 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00340.1	4.7e-31	62.81	ATCG00340.1 Photosystem I, PsaA/PsaB protein	[more]

BLAST of CmaCh00G001810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|156618906\|ref\|YP_001430042.1\|	2.0e-39	46.72	photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta gronovii]	[more]
gi\|570880109\|ref\|YP_008994394.1\|	1.7e-38	47.62	photosystem I P700 apoprotein A2 (chloroplast) (chloroplast) [Viviania marifolia...	[more]
gi\|937633648\|gb\|ALI90404.1\|	4.1e-37	52.97	PsaB, partial (chloroplast) [Nothapodytes montana]	[more]
gi\|756877062\|ref\|YP_009113853.1\|	7.8e-36	46.29	photosystem I P700 apoprotein A2 (chloroplast) [Stangeria eriopus]	[more]
gi\|814071651\|ref\|YP_009121299.1\|	3.0e-35	45.41	photosystem I P700 apoprotein A2 (plastid) [Araucaria heterophylla]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001280	PSI_PsaA/B

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I
GO:0009579	thylakoid
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001810.1	CmaCh00G001810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001280	Photosystem I PsaA/PsaB	GENE3D	G3DSA:1.20.1130.10		coord: 172..207 score: 7.0E-7coord: 65..142 score: 2.9
IPR001280	Photosystem I PsaA/PsaB	PFAM	PF00223	PsaA_PsaB	coord: 68..142 score: 5.0E-17coord: 173..208 score: 4.
IPR001280	Photosystem I PsaA/PsaB	unknown	SSF81558	Photosystem I subunits PsaA/PsaB	coord: 65..207 score: 3.92
None	No IPR available	PANTHER	PTHR30128	OUTER MEMBRANE PROTEIN, OMPA-RELATED	coord: 63..249 score: 8.9
None	No IPR available	PANTHER	PTHR30128:SF4	PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2	coord: 63..249 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G001810	CmoCh00G000740	Cucurbita moschata (Rifu)	cmacmoB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G001810	Cucurbita maxima (Rimu)	cmacmaB003
CmaCh00G001810	Cucurbita maxima (Rimu)	cmacmaB018