CmaCh00G001620 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-quinone oxidoreductase subunit L
LocationCma_Chr00 : 10518777 .. 10521369 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGTATTTGATTGTCTAGTATAGTTATGATTTTTTCAGTTTATCTATCTATCTATTGATCAAATAAATAGTAGTTATATCTATCCATATGTATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTTGGTGATATGAACCACGACCAAGGAATTTCCATACCTGATAGTCCAATTACAAGGACGAGAGCTAAGAAGCTACAACAAATCTTATACAGTTATATTCAAGCTATGGTGAGCTCATTAAAGAAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGCTTCAAGAAAAAGATGAATTAAATGCACTTTAAGTTGCATTTAATGAACTCCACTGAATTTATGAAACTAGTCCAAGGATGAGTCAATAAGCACATTTTATTAATTGCATTATTTTATTATAGTTTAAATATTTGTTTGTCATATTTAAGCTAGTTTTAAATATAGGAGTTAAGGTTATATTGTAACCCACATAGGTTACTATATTCCACCATTAACTAGCCATTTTAATATGGAGGTTATGAGTATTTTTCATTTACTAGCCCATTTAATTTGGGAGTTATATATCCATAGGTTAAGGTTGTAAGGGCTATATAAAGCCTTCTTTTCTTTGATTAGACATCAGATTTTGGAATTAAGAATAGAATTTCTATTTTAGCTTTGTTGAGAGCTAAACTTTCTTTGCAAATTCTTGTGTTTAGAACTTGCATGTAGGACTCAAGTGGTATTGATCAAACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACGAGTTTTCTTTTCAAGTGGTATTGATCAAACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACGAGTTTTCTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCATACTTTCCCTTGGGTTGGTTTTCCATATCAGTTGGGCTACTTTACTTGATCGATCCACTTACTTGTATTATGTCAATATTAATCACGATGGAATTATGGTTCTTATTTATAGTGACAATTATATGTCTCACGATCAAGGATATTTGAGAGCGTATATGAGTTTGTTCAATACGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCAAATTTCTCTTTTTTGAGAATTGGTTGGAATGTGGTCTTATCTATTAATAGGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTATTTGTAACTAATTGCGTGGGGGATTTGGGCTTATTTCTTATTAGGGATTTTAGGTCTTTATTGGACAACAGAGAGTTTTGCATTTCGGGATTGATTTCTAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGCCGTCCTTCCTATTATTTGCAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGTAGGGGAAGTTTTCTTATTGCTCGGCTTCTTCCGCTTTTTATAGTAATACCTTACATCATGAATCTAATAGCTAGGGATAATAACAGTACTATATTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTAAGAGAAGTTTCAGCCTATTCTACAATGTCTCAATTGGGTTATACGTATGATGTTAGCTGCTTTGGGTATAGGGTCTTATCGACCTGCTCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCCTGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

mRNA sequence

ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Coding sequence (CDS)

ATGGATCATACCTTTCATCTCACTTTCAATTCCTATCTTAATAGGAGTGGGACTTCTACTTTCTTTTTCCGACCTCACCAAAACCCTTCGACGTATGTACTCTTTTCCGAGGTTTTGGTTCACTCCACCTACTGCTGCCGTAAATGCTTGTCAAAAGGTGCAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTCGGCTCTTATACATGCTGCTACAATGGATCTTGGTCCATTCATTATTCACTCAATGGAATCGGTTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGGGGTTTAACATGTGCCAATTACAAAAAATGCTTTTTGATTAGGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTACCCTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCATGTTCCACAGCAGGATTAACAGCATTTTATATGTTTCCTATCTACTTACTGACTTTTGAGGGACATTTAAACATTTTCAAACAGTGGAAAAACAAATAA

Protein sequence

MDHTFHLTFNSYLNRSGTSTFFFRPHQNPSTYVLFSEVLVHSTYCCRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMDLGPFIIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLMIVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHLNIFKQWKNK
Homology
[Close]
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match: NU5C_CARCG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carpenteria californica GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 84/130 (64.62%), Postives = 90/130 (69.23%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           +IHSME+VVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 363 VIHSMETVVGYSPDKSQNMVLMGGLT------------------------KHVPITKTAF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
            +  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 423 FLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 468

Query: 212 NI-FKQWKNK 221
           N+ F+ +  K
Sbjct: 483 NVHFQNYSGK 468

[Close]
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 82/123 (66.67%), Postives = 88/123 (71.54%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 363 IIHSMESVVGYSPDKSQNMVLMGGLT------------------------KHVPITKNAF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCG+PPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTF+GHL
Sbjct: 423 LLGTLSLCGVPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFDGHL 461

Query: 212 NIF 215
           N++
Sbjct: 483 NLY 461

[Close]
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match: NU5C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis GN=ndhF PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.8e-37
Identity = 82/130 (63.08%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME+VVGYSP+KSQNM LMGGLT                         + P  K   
Sbjct: 363 IIHSMETVVGYSPEKSQNMALMGGLT------------------------KYAPITKTAF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF +YLLTFEGHL
Sbjct: 423 LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRMYLLTFEGHL 468

Query: 212 NI-FKQWKNK 221
           N+ F+ +  K
Sbjct: 483 NVHFQNYSGK 468

[Close]
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match: NU5C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-37
Identity = 81/122 (66.39%), Postives = 87/122 (71.31%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME +VGYSPDKSQNMVLMGGLT                         + P  K   
Sbjct: 363 IIHSMEPIVGYSPDKSQNMVLMGGLT------------------------KYVPITKTTF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF +YLLTFEGHL
Sbjct: 423 LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRMYLLTFEGHL 460

Query: 212 NI 214
           +I
Sbjct: 483 HI 460

[Close]
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match: NU5C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhF PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36
Identity = 84/125 (67.20%), Postives = 88/125 (70.40%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME++VGYSPDKSQNMVLMGGL     KK                     P  K   
Sbjct: 363 IIHSMEAIVGYSPDKSQNMVLMGGL-----KKHV-------------------PITKTAF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           +V  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGH 
Sbjct: 423 LVGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHF 463

Query: 212 NIFKQ 217
           N+  Q
Sbjct: 483 NVHFQ 463

[Close]
BLAST of CmaCh00G001620 vs. TrEMBL
Match: A2TC76_9APIA (NADH dehydrogenase subunit F (Fragment) OS=Eleutherococcus sessiliflorus GN=ndhF PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 115/231 (49.78%), Postives = 131/231 (56.71%), Query Frame = 1 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFII----------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM   G F++           
Sbjct: 208 CAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLIPLFIVIP 267

Query: 106 HSME--SVVG-------------YSPDKSQNMVLMGGLTCANYKKCF--LIRYPFSLFVV 165
           H M   S+VG                  SQ   +M  L   +Y+     LI + +S  ++
Sbjct: 268 HIMNLISLVGIITVLLGATLALAQKDIMSQLGYMMLALGMGSYRSALFHLITHAYSKALL 327

Query: 166 F----------HPLPAFGPKMKFLMI--------VPF---------LSLCGIPPLACFWS 220
           F            L  + PK    M+        VP          LSLCGIPPLACFWS
Sbjct: 328 FLGSGSVIHSMETLVGYSPKKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWS 387

[Close]
BLAST of CmaCh00G001620 vs. TrEMBL
Match: K4K7I4_9ROSI (NdhF (Fragment) OS=Drypetes roxburghii GN=ndhF PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.4e-37
Identity = 84/130 (64.62%), Postives = 92/130 (70.77%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME++VGYSPDKSQNMVLMGGLT                         + P  K   
Sbjct: 378 IIHSMEAIVGYSPDKSQNMVLMGGLT------------------------KYVPITKIFF 437

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF +YLLTFEGHL
Sbjct: 438 LLGVLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRVYLLTFEGHL 483

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 498 NVHFKNYSGK 483

[Close]
BLAST of CmaCh00G001620 vs. TrEMBL
Match: Q29S63_CORMY (NADH dehydrogenase subunit F (Fragment) OS=Coriaria myrtifolia GN=ndhF PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLT------------------------KHVPITKIFF 89

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 90  LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 135

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 150 NLSFKNYSGK 135

[Close]
BLAST of CmaCh00G001620 vs. TrEMBL
Match: A9XUM6_9ROSI (NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Coriaria nepalensis GN=ndhF PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 9.7e-37
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 341 IIHSMESVVGYSPDKSQNMVLMGGLT------------------------KHVPITKIFF 400

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 401 LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 446

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 461 NLYFKNYSGK 446

[Close]
BLAST of CmaCh00G001620 vs. TrEMBL
Match: Q29S56_9ROSI (NADH dehydrogenase subunit F (Fragment) OS=Dendrosicyos socotranus GN=ndhF PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGL                           GP  K   
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLR------------------------KHGPITKNAF 89

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 90  LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 135

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 150 NLYFKNYSGK 135

[Close]
BLAST of CmaCh00G001620 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-36
Identity = 79/123 (64.23%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME++VGYSPDKSQNM+LMGGLT                           P  K   
Sbjct: 363 IIHSMEAIVGYSPDKSQNMILMGGLT------------------------KHVPITKTAF 422

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDS L+SPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 423 LIGTLSLCGIPPLACFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 461

Query: 212 NIF 215
           N +
Sbjct: 483 NTY 461

[Close]
BLAST of CmaCh00G001620 vs. TAIR10
Match: ATMG00060.1 (ATMG00060.1 NADH dehydrogenase subunit 5C)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 31/53 (58.49%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSP 105
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPP 280

[Close]
BLAST of CmaCh00G001620 vs. TAIR10
Match: ATMG00513.1 (ATMG00513.1 NADH dehydrogenase 5A)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 31/53 (58.49%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSP 105
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPP 280

[Close]
BLAST of CmaCh00G001620 vs. TAIR10
Match: ATMG00665.1 (ATMG00665.1 NADH dehydrogenase 5B)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 31/53 (58.49%), Postives = 34/53 (64.15%), Query Frame = 1 

Query: 53  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFIIHSMESVVGYSP 105
           GAV KSAQ   H W PDAMEGPTP+SA IHAATM   G F+I     +  Y P
Sbjct: 228 GAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPP 280

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: gi|124109154|gb|ABM91053.1| (NADH dehydrogenase subunit F [Eleutherococcus sessiliflorus])

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 115/231 (49.78%), Postives = 131/231 (56.71%), Query Frame = 1 

Query: 46  CRKCLSKGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM-DLGPFII----------- 105
           C   L  GAVAKSAQFPLHVWLPDAMEGPTPISALIHAATM   G F++           
Sbjct: 208 CAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLIPLFIVIP 267

Query: 106 HSME--SVVG-------------YSPDKSQNMVLMGGLTCANYKKCF--LIRYPFSLFVV 165
           H M   S+VG                  SQ   +M  L   +Y+     LI + +S  ++
Sbjct: 268 HIMNLISLVGIITVLLGATLALAQKDIMSQLGYMMLALGMGSYRSALFHLITHAYSKALL 327

Query: 166 F----------HPLPAFGPKMKFLMI--------VPF---------LSLCGIPPLACFWS 220
           F            L  + PK    M+        VP          LSLCGIPPLACFWS
Sbjct: 328 FLGSGSVIHSMETLVGYSPKKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWS 387

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: gi|408900226|gb|AFU94896.1| (NdhF, partial (chloroplast) [Drypetes roxburghii])

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 84/130 (64.62%), Postives = 92/130 (70.77%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSME++VGYSPDKSQNMVLMGGLT                         + P  K   
Sbjct: 378 IIHSMEAIVGYSPDKSQNMVLMGGLT------------------------KYVPITKIFF 437

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF +YLLTFEGHL
Sbjct: 438 LLGVLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRVYLLTFEGHL 483

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 498 NVHFKNYSGK 483

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: gi|70780073|gb|AAZ08356.1| (NADH dehydrogenase subunit F, partial [Coriaria myrtifolia])

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLT------------------------KHVPITKIFF 89

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 90  LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 135

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 150 NLSFKNYSGK 135

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: gi|157689260|gb|ABV65186.1| (NADH-plastoquinone oxidoreductase subunit 5, partial (chloroplast) [Coriaria nepalensis])

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGLT                           P  K   
Sbjct: 341 IIHSMESVVGYSPDKSQNMVLMGGLT------------------------KHVPITKIFF 400

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 401 LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 446

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 461 NLYFKNYSGK 446

[Close]
BLAST of CmaCh00G001620 vs. NCBI nr
Match: gi|70780087|gb|AAZ08363.1| (NADH dehydrogenase subunit F, partial [Dendrosicyos socotranus])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 87/130 (66.92%), Postives = 91/130 (70.00%), Query Frame = 1 

Query: 92  IIHSMESVVGYSPDKSQNMVLMGGLTCANYKKCFLIRYPFSLFVVFHPLPAFGPKMKFLM 151
           IIHSMESVVGYSPDKSQNMVLMGGL                           GP  K   
Sbjct: 30  IIHSMESVVGYSPDKSQNMVLMGGLR------------------------KHGPITKNAF 89

Query: 152 IVPFLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFPIYLLTFEGHL 211
           ++  LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMF IYLLTFEGHL
Sbjct: 90  LLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFEGHL 135

Query: 212 NI-FKQWKNK 221
           N+ FK +  K
Sbjct: 150 NLYFKNYSGK 135

The following BLAST results are available for this feature:
BLAST of CmaCh00G001620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU5C_CARCG2.1e-3764.62NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Carpenteria californi... [more]
NU5C_CUCSA2.1e-3766.67NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU5C_PLAOC2.8e-3763.08NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Platanus occidentalis... [more]
NU5C_LIRTU8.1e-3766.39NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Liriodendron tulipife... [more]
NU5C_EUCGG1.1e-3667.20NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Eucalyptus globulus s... [more]
BLAST of CmaCh00G001620 vs. TrEMBL
Match NameE-valueIdentityDescription
A2TC76_9APIA1.6e-3949.78NADH dehydrogenase subunit F (Fragment) OS=Eleutherococcus sessiliflorus GN=ndhF... [more]
K4K7I4_9ROSI7.4e-3764.62NdhF (Fragment) OS=Drypetes roxburghii GN=ndhF PE=3 SV=1[more]
Q29S63_CORMY9.7e-3766.92NADH dehydrogenase subunit F (Fragment) OS=Coriaria myrtifolia GN=ndhF PE=4 SV=1[more]
A9XUM6_9ROSI9.7e-3766.92NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Coriaria nepalensis GN... [more]
Q29S56_9ROSI1.3e-3666.92NADH dehydrogenase subunit F (Fragment) OS=Dendrosicyos socotranus GN=ndhF PE=4 ... [more]
BLAST of CmaCh00G001620 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01010.11.5e-3664.23ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein[more]
ATMG00060.12.0e-0958.49ATMG00060.1 NADH dehydrogenase subunit 5C[more]
ATMG00513.12.0e-0958.49ATMG00513.1 NADH dehydrogenase 5A[more]
ATMG00665.12.0e-0958.49ATMG00665.1 NADH dehydrogenase 5B[more]
BLAST of CmaCh00G001620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|124109154|gb|ABM91053.1|2.3e-3949.78NADH dehydrogenase subunit F [Eleutherococcus sessiliflorus][more]
gi|408900226|gb|AFU94896.1|1.1e-3664.62NdhF, partial (chloroplast) [Drypetes roxburghii][more]
gi|70780073|gb|AAZ08356.1|1.4e-3666.92NADH dehydrogenase subunit F, partial [Coriaria myrtifolia][more]
gi|157689260|gb|ABV65186.1|1.4e-3666.92NADH-plastoquinone oxidoreductase subunit 5, partial (chloroplast) [Coriaria nep... [more]
gi|70780087|gb|AAZ08363.1|1.8e-3666.92NADH dehydrogenase subunit F, partial [Dendrosicyos socotranus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001750ND/Mrp_mem
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001620.1CmaCh00G001620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 49..117
score: 1.3E-13coord: 142..195
score: 3.
NoneNo IPR availablePRINTSPR01434NADHDHGNASE5coord: 75..101
score: 1.1E-14coord: 53..74
score: 1.1
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 145..214
score: 1.1E-53coord: 53..124
score: 1.1
NoneNo IPR availablePANTHERPTHR22773:SF82NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 5, CHLOROPLASTICcoord: 145..214
score: 1.1E-53coord: 53..124
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001620Cucurbita maxima (Rimu)cmacmaB018