CmaCh00G001580 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr00 : 10472411 .. 10472608 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTCTTCACTCTCCTAGCTATTCTTTTCGGATTCTCCTTTTGTTCTCTGTTTATTGGCAATGGCCCTGTCGTCGTTCAAGCTCTCCATAAAATCTATCCTGAATTACAGTCTCTCGAAAATGGCAACGACACCACCACCGAGATCAAGCAGCTCCATCGAACCGACTTCCACTTTCAACCTCATCGTCACTAA

mRNA sequence

ATGAATTTCTTCACTCTCCTAGCTATTCTTTTCGGATTCTCCTTTTGTTCTCTGTTTATTGGCAATGGCCCTGTCGTCGTTCAAGCTCTCCATAAAATCTATCCTGAATTACAGTCTCTCGAAAATGGCAACGACACCACCACCGAGATCAAGCAGCTCCATCGAACCGACTTCCACTTTCAACCTCATCGTCACTAA

Coding sequence (CDS)

ATGAATTTCTTCACTCTCCTAGCTATTCTTTTCGGATTCTCCTTTTGTTCTCTGTTTATTGGCAATGGCCCTGTCGTCGTTCAAGCTCTCCATAAAATCTATCCTGAATTACAGTCTCTCGAAAATGGCAACGACACCACCACCGAGATCAAGCAGCTCCATCGAACCGACTTCCACTTTCAACCTCATCGTCACTAA

Protein sequence

MNFFTLLAILFGFSFCSLFIGNGPVVVQALHKIYPELQSLENGNDTTTEIKQLHRTDFHFQPHRH
Homology
[Close]
BLAST of CmaCh00G001580 vs. TrEMBL
Match: A0A0A0LAY1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777580 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.1e-12
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1  MNFFTLLAILFGFSFCSLFIGNGPVVVQALHKIYPELQSLENGNDTTTEIKQLHRTDFHF 60
          MN FT L++L GFSF SLFI NG V V ALHKIYPELQS++      + IK LHRT FHF
Sbjct: 1  MNLFTFLSLLLGFSFFSLFINNGVVFVDALHKIYPELQSIQT---DASVIKPLHRTRFHF 60

Query: 61 QPHRH 66
          QP R+
Sbjct: 61 QPRRN 62

[Close]
BLAST of CmaCh00G001580 vs. NCBI nr
Match: gi|449462946|ref|XP_004149196.1| (PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 1-like [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-11
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 1  MNFFTLLAILFGFSFCSLFIGNGPVVVQALHKIYPELQSLENGNDTTTEIKQLHRTDFHF 60
          MN FT L++L GFSF SLFI NG V V ALHKIYPELQS++      + IK LHRT FHF
Sbjct: 1  MNLFTFLSLLLGFSFFSLFINNGVVFVDALHKIYPELQSIQT---DASVIKPLHRTRFHF 60

Query: 61 QPHRH 66
          QP R+
Sbjct: 61 QPRRN 62

[Close]
BLAST of CmaCh00G001580 vs. NCBI nr
Match: gi|659084391|ref|XP_008442862.1| (PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 1-like [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-08
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 5  TLLAILFGFSFCSLFIGNGPVVVQALHKIYPELQSLENGNDTTTEIKQLHRTDFHFQPHR 64
          T L++L GFSF SLFI NG   V+ALHKIYPELQS++      + +K LHRT FHFQP R
Sbjct: 6  TFLSLLLGFSFFSLFINNG---VEALHKIYPELQSIQT---DASVVKPLHRTRFHFQPRR 60

Query: 65 H 66
          +
Sbjct: 66 N 60

The following BLAST results are available for this feature:
BLAST of CmaCh00G001580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAY1_CUCSA7.1e-1263.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777580 PE=3 SV=1[more]
BLAST of CmaCh00G001580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462946|ref|XP_004149196.1|1.0e-1163.08PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 1-like [Cucumis sativus][more]
gi|659084391|ref|XP_008442862.1|1.8e-0859.02PREDICTED: beta-fructofuranosidase, insoluble isoenzyme 1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001580.1CmaCh00G001580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001580Cucurbita maxima (Rimu)cmacmaB018