CmaCh00G001530 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr00 : 10230228 .. 10231490 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTATTTGCATGAGTCAATAACAAGGTGAATAAAGAAAGTATTTATAGTAAGTGGGAGAAGGAAGTATGTCAACACCTCCTATGGTCTCTACCACTAGGTTGCACCGTGAGATTCCCATGTTCCATTTGCATGTTGCCCTAGAGCAACTATCCATTCGGAGGGTCGTAACATGGGAGTCGAAACAACGCAAACTCCATAAATGGATAGGATTTCTTAGGTCCGTTTCCAACTTTGGCTTTTTCATTCGATAGAGTTGTTGGGACCGATCTCTGAGGTTTAAAATGGCGGGTCACACTTACAAAGAATTACTAAGAGTTAGTATATTCTTGACCAAAATAGCGATAACTAAAAACACTATAGGAACAAGAGTTATTATGGGATTAGTGTTTAAAGTCAAAAATGTTTTGGTTTAGTGAATGAGTGATTGACTGCCCCTCGGTAGCAGTTGCTCTAACTCACTAAAGTATTGTTGCAAATTAATAATTTTTTGGTACATCATTACATTTGCTAAAACTGATTGGATTAAACAGGATTAAGTCAAATCACTAATAGAATTTTCTTTGTATCACACAGCATGACAAACTCAATAGTACAATAACTCGCTTCTGAGAAATTAAACGGCGACAATTACGTAACTTGGAAATCAAACCTAAACACAATACTGGTTATTGATGATTTAAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGTTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGAGACAAACAGGAGAAGCAAATGTTGTTATCTCCAAGAAATTACTATGA

mRNA sequence

ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTTGCACCGTGAGATTCCCATGTTCCATTTGCATGTTGCCCTAGAGCAACTATCCATTCGGAGGGTCGTAACATGGGAGTCGAAACAACGCAAACTCCATAAATGGATAGGATTTCTTAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGTTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGAGACAAACAGGAGAAGCAAATGTTGTTATCTCCAAGAAATTACTATGA

Coding sequence (CDS)

ATGCTCGGTCTTGCGTCGCCTTGGAAGCGTCCTCCATTCGGAAGGTTGCACCGTGAGATTCCCATGTTCCATTTGCATGTTGCCCTAGAGCAACTATCCATTCGGAGGGTCGTAACATGGGAGTCGAAACAACGCAAACTCCATAAATGGATAGGATTTCTTAGGTTTGTTTTAATTGAGGAATGTCCTCCAAACACCAGCTCAAATGCAAACCGAACAGTTCGGGATGCGTATGACAAATGGATAAAGGAAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGAGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCATCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGTCGTATGAAAGAAGGGACCTCAGTTAGAGAACTTGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGTTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAACGAACAAGAGACAAACAGGAGAAGCAAATGTTGTTATCTCCAAGAAATTACTATGA

Protein sequence

MLGLASPWKRPPFGRLHREIPMFHLHVALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKENDKARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKRQTGEANVVISKKLL
Homology
[Close]
BLAST of CmaCh00G001530 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.0e-61
Identity = 127/205 (61.95%), Postives = 159/205 (77.56%), Query Frame = 1 

Query: 27  VALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKEND 86
           +A E+L+      W+S    +   +  LRFVL EECP   + NANRTVR+AYD+W+K ND
Sbjct: 9   LASEKLNGDNYSAWKSNLNTILV-VDDLRFVLTEECPQAPALNANRTVREAYDRWVKAND 68

Query: 87  KARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTS 146
           KARVYILAS++DVLAKKHD ++TAK IM+SL+ MFGQPS+SLRHEAIK+IY  RMKEGTS
Sbjct: 69  KARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTS 128

Query: 147 VRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLN 206
           VRE VLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLN
Sbjct: 129 VREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLN 188

Query: 207 ELQTYQSLLTNKRQTGEANVVISKK 232
           ELQ +Q+L  +K +  EANV ++K+
Sbjct: 189 ELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]
BLAST of CmaCh00G001530 vs. TrEMBL
Match: W9RV37_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.9e-40
Identity = 90/175 (51.43%), Postives = 125/175 (71.43%), Query Frame = 1 

Query: 55  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKARVYILASISDVLAKKHDVMSTAKEIM 114
           +FVL+EECPP  + NA +T R+ YD+WIK N+KA+ ++LAS+SDVL KKH+ M TA EIM
Sbjct: 11  KFVLVEECPPEPAVNATKTAREPYDRWIKANNKAKCFMLASMSDVLRKKHEEMETAYEIM 70

Query: 115 ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEVVIDEKSQV 174
           ESL+ MFG PS   R  A++   N +MK+G+SV+  VL+M+ H + AE N   IDE ++V
Sbjct: 71  ESLEAMFGPPSEKARLAAVRAFMNDKMKKGSSVKVHVLNMIDHLHDAELNGARIDETTKV 130

Query: 175 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKRQTGEANVVIS 230
             I+ S    F++F  N VMNK + NLT L+N+LQ ++S  TNKR+ GEANVV++
Sbjct: 131 GIILESPSPVFYEFVNNFVMNKKKSNLTELMNDLQNFES--TNKRKGGEANVVVA 183

[Close]
BLAST of CmaCh00G001530 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.4e-39
Identity = 91/155 (58.71%), Postives = 115/155 (74.19%), Query Frame = 1 

Query: 27  VALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKEND 86
           +A E+L+      W+S    +   +  LRF+L EEC    + NANRTVR+AYD+W K ND
Sbjct: 9   LASEKLNSDNYSAWKSNLNTILV-VEDLRFILTEECHQAPALNANRTVREAYDRWGKAND 68

Query: 87  KARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTS 146
           KA VYILAS++DVLAKK+D ++T K IM+S + MFGQPS+SLRHEAIK IY  RMKEGTS
Sbjct: 69  KACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTKRMKEGTS 128

Query: 147 VRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSL 182
           VRE VLDMM+HFN+A+ +   IDE +QVSFI+ SL
Sbjct: 129 VREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSL 162

[Close]
BLAST of CmaCh00G001530 vs. TrEMBL
Match: W9ST61_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 88/175 (50.29%), Postives = 123/175 (70.29%), Query Frame = 1 

Query: 55  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKARVYILASISDVLAKKHDVMSTAKEIM 114
           +FVL+EECP   ++N ++T R+ YD WIK N+ A+ ++LA++SDVL KKH+ M TA EIM
Sbjct: 11  KFVLVEECPQELAANTSKTTREPYDHWIKANNNAKCFMLANMSDVLRKKHEEMETAYEIM 70

Query: 115 ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEVVIDEKSQV 174
           ESL+ MFG PS   R +A+    N +MK+G+SV+  VL+M+ H + AE N   IDE +QV
Sbjct: 71  ESLEAMFGTPSEKARLDAVWAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQV 130

Query: 175 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKRQTGEANVVIS 230
             I+ SL  +F QF  N VMNK + NLT L+N LQ ++S  TNKR+ GEANV+++
Sbjct: 131 GIILESLSPNFHQFVNNFVMNKKKSNLTELMNNLQNFES--TNKRRGGEANVLVA 183

[Close]
BLAST of CmaCh00G001530 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-36
Identity = 80/159 (50.31%), Postives = 114/159 (71.70%), Query Frame = 1 

Query: 55  RFVLIEECPPNTSSNANRTVRDAYDKWIKENDKARVYILASISDVLAKKHDVMSTAKEIM 114
           +FVL++ECPP  ++NA +T R+ YD+WIK N+KA+ ++LAS+SDVL KKH+ M TA EIM
Sbjct: 36  KFVLVDECPPEPAANATKTAREPYDRWIKANNKAKCFMLASMSDVLCKKHEEMETAYEIM 95

Query: 115 ESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEVVIDEKSQV 174
           ESL+ MFG PS   R +A++   N +MK+G+SV+  VL+M+ H + AE N   IDE +Q+
Sbjct: 96  ESLEAMFGAPSEKARLDAVRAFMNDKMKKGSSVKAHVLNMIDHLHDAELNGARIDEATQL 155

Query: 175 SFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQS 214
             I+ SL   F +F  N VMNK + NLT L+N+LQ ++S
Sbjct: 156 GIILESLSPDFHEFVNNFVMNKKKSNLTELMNDLQNFES 194

[Close]
BLAST of CmaCh00G001530 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 242.3 bits (617), Expect = 8.6e-61
Identity = 127/205 (61.95%), Postives = 159/205 (77.56%), Query Frame = 1 

Query: 27  VALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKEND 86
           +A E+L+      W+S    +   +  LRFVL EECP   + NANRTVR+AYD+W+K ND
Sbjct: 9   LASEKLNGDNYSAWKSNLNTILV-VDDLRFVLTEECPQAPALNANRTVREAYDRWVKAND 68

Query: 87  KARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTS 146
           KARVYILAS++DVLAKKHD ++TAK IM+SL+ MFGQPS+SLRHEAIK+IY  RMKEGTS
Sbjct: 69  KARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTS 128

Query: 147 VRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLN 206
           VRE VLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLN
Sbjct: 129 VREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLN 188

Query: 207 ELQTYQSLLTNKRQTGEANVVISKK 232
           ELQ +Q+L  +K +  EANV ++K+
Sbjct: 189 ELQRFQNLTLSKGKEVEANVAVTKR 212

[Close]
BLAST of CmaCh00G001530 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 3.2e-55
Identity = 112/178 (62.92%), Postives = 145/178 (81.46%), Query Frame = 1 

Query: 54  LRFVLIEECPPNTSSNANRTVRDAYDKWIKENDKARVYILASISDVLAKKHDVMSTAKEI 113
           LRFVL+E+CP  +++NA RTVR+AY++W K N+KAR Y+LAS+S+VLAKK++ M TA+EI
Sbjct: 35  LRFVLVEKCPQVSAANATRTVREAYERWAKANEKARAYLLASLSEVLAKKNESMLTAREI 94

Query: 114 MESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVRELVLDMMVHFNVAEENEVVIDEKSQ 173
           M+SL+ MFGQ S+ ++H+A+KYIYN RM +G  VRE VL+MMV+FNVAE N  VIDE +Q
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNDGALVREHVLNMMVYFNVAEMNGAVIDEANQ 154

Query: 174 VSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKRQTGEANVVISKK 232
           VSFI+ SL +SF QFR+NVVMNKI Y LT LLNELQT++SL+  K Q GEANV  S +
Sbjct: 155 VSFILESLLESFLQFRSNVVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTR 212

[Close]
BLAST of CmaCh00G001530 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 3.4e-49
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 1 

Query: 27  VALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKEND 86
           +A E+++      W+S    +   +  LRFVL EECP N +SNANRT R+AYD+WIK N+
Sbjct: 9   LASEKINDDNYAAWKSNLNTILV-VDDLRFVLTEECPQNPASNANRTGREAYDRWIKANE 68

Query: 87  KARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTS 146
           KARVYILAS+SDVLAKKH+ ++TAKEIM+SL+GMFGQP +SLRHEA+KYIY  RMKEGTS
Sbjct: 69  KARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTKRMKEGTS 128

Query: 147 VRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQF 189
           VRE VLDMM+HFN+A+ N  +I+E +QVSFI+ SLPKSF  F
Sbjct: 129 VREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]
BLAST of CmaCh00G001530 vs. NCBI nr
Match: gi|659118732|ref|XP_008459275.1| (PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 103/190 (54.21%), Postives = 134/190 (70.53%), Query Frame = 1 

Query: 25  LHVALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKE 84
           LHV L+        TW+SK   +   I  LRF+L+EEC    +    ++VRDAYD+W K 
Sbjct: 2   LHVFLDY------ATWKSKLNMILV-ITDLRFILMEECSLFLTQGTFKSVRDAYDRWKKA 61

Query: 85  NDKARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEG 144
           NDKA VYI+AS+SD+L+ KH +M T ++I++SL+ MFGQ S  ++ E IKY+YN RMK+ 
Sbjct: 62  NDKAHVYIMASMSDILSNKHKIMVTTRQIVDSLREMFGQLSIQIKQETIKYVYNARMKDS 121

Query: 145 TSVRELVLDMMVHFNVAEENEVVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTAL 204
            SV++ VL+M+VHFNV E N VV DEKSQVSFI+  LPKS  QF  N  MNKI+YN+T  
Sbjct: 122 QSVKKHVLNMIVHFNVVEMNVVVFDEKSQVSFILKYLPKSSLQFNNNAEMNKIKYNMTIF 181

Query: 205 LNELQTYQSL 215
           LNELQT+QSL
Sbjct: 182 LNELQTFQSL 184

[Close]
BLAST of CmaCh00G001530 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 1 

Query: 27  VALEQLSIRRVVTWESKQRKLHKWIGFLRFVLIEECPPNTSSNANRTVRDAYDKWIKEND 86
           +A E+L+      W+S    +   +  LRFVL EECP   SSNA++T R AYD+WIK N+
Sbjct: 9   LAFEKLNGDNYAAWKSNLNTILV-VDDLRFVLTEECPQTPSSNASQTSRKAYDRWIKANE 68

Query: 87  KARVYILASISDVLAKKHDVMSTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTS 146
           KARVYILAS+SDVLAKKH+ ++TAKEIM SLKGMFGQP +SLRHE IKYIY  RMKEGTS
Sbjct: 69  KARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTKRMKEGTS 128

Query: 147 VRELVLDMMVHFNVAEENEVVIDEKSQVSFIM 179
           ++E VLDMM+HFN+ E N   IDE +QVSFI+
Sbjct: 129 IKEHVLDMMMHFNIFEVNGGAIDEANQVSFIL 159

The following BLAST results are available for this feature:
BLAST of CmaCh00G001530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001530 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI6.0e-6161.95Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9RV37_9ROSA9.9e-4051.43Uncharacterized protein OS=Morus notabilis GN=L484_006900 PE=4 SV=1[more]
E2GK52_BRYDI6.4e-3958.71Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9ST61_9ROSA2.4e-3850.29Uncharacterized protein OS=Morus notabilis GN=L484_003432 PE=4 SV=1[more]
W9SH28_9ROSA2.3e-3650.31Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
BLAST of CmaCh00G001530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|8.6e-6161.95gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|3.2e-5562.92PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|3.4e-4963.58PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659118732|ref|XP_008459275.1|5.4e-4754.21PREDICTED: uncharacterized protein LOC103498451 [Cucumis melo][more]
gi|659086056|ref|XP_008443743.1|1.2e-4362.50PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001530.1CmaCh00G001530.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 60..210
score: 1.2
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 60..210
score: 1.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 81..212
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001530Cucurbita maxima (Rimu)cmacmaB018