CmaCh00G001490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr00 : 9789036 .. 9792034 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGATTATCATGCCCACGGTAAACGCTGGATAGCCAAGTGCGGAGCGAATAATTGCTGAAAGCATCTAAGTAGTACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGTTTTGAGAATGAAAGAGAAGAGAAAGAATGAATAAGGAGTGTTTACAGTTAAAGAATAGTGAAAGAAGGAAAAGGTGAAGACAGTAGAAAGAAGAAATAGGTTCAAGAAGGATAAATATGCTTGACCGAGTGAGAGAAGAAATAGGAAAAGGAGAGAAGACAAAAATAGTGAAACCCCAGTTTGAGAGGTGAAGTAGTGATTGAGTTCAGTCTCTTTCCTTCCAATTTAATTACCTCATAAATGGACCTAAACATAGGGAGAGACATCAATTAAATAAGAAGAAATGGTTCTTACAGTCGAATTCATGTTTCATTTGAGAATCAATAGGTGAAATCAAAGGTTCAGTCAGTCGCTTCGCTTAATCTCATTTGACTCTCCTCGACTGTAAAGTCACATTCATCTTGAGTCTTGACTTACAGTGAACTCTCATTCATCTTGAGTTTTGTCTTTCCGGTCAGGGAATAAATAGCATATAGGGGGGAAGGAGCTTATCTCTCTCTCTTTCCTTCCTGTTCCGTCTCATTCATCGAGAGTGTTTACAGGAGAATTCTTGTTTCATTTTCTTCTCCATTCATTTCTTCTTTCACTGTAAAGTCTCATTAATAAGGAGTTTCGGCTTTCCTTTCTTTTTAAAGTTTAGGTTCAGTAGCTCTCGGTTCAGGTTCCTTCTTTCATTCATTTACTGTAAAGGATGTGGAAGTGCATTGATGTATGCAGCTGAGGCATCCTAACAAACCAATAGACTTGAACCTTGATCCTACATGACCCAATCAATTCGATTAGGAACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAAGATGAAACAAAAAAAGCTCTCCCTCTCTATCTATCCAAGGGATGGAAGGGTAAAGGCCTTTGGTGTCCCCTCTAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCTGGTTCGATATTCTGGTGTCCTAGGCATAGAGGAACCACACCAATTCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGAGGTCCTGCAAGAGCTCGACGTAAGGATGATAAAAAGCTTAACCCCTCTAATTCTTATTACTTTTCAATATTCAACAATTTGGAAAAACACTAATAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCTCACTTCACACCTTGGAACACACCATTCTTATAGAGGCGCTTTCACATCTATCTTCTTAACCCGAAATGGAAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGGAACAGATCCAGTGGAGACGAGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACAACCAGGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACTGGCCAAAAAGGGAAGGACTTTTCCCTCTAGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTTCTTTTTCGTTAATGGGTTAAGGGGGTTCCGTTATAAATTCAATATAGTATACTCTCTCCGAATTAGCATTTTTTTTTGTTTTACGCCCCGTAATTCTTCCTAAGCCAGGCTTCTGCAGAATAGCGGAGCCAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATCTCTTTGCTCGCGGTAATTGTGATGGGAGAATCGATGCCTGCATCAAAGATGTACTAGTATAGTAGTTTGAGTATTAGAATTCTTAATTGACTATTTGTAAATAGACCAGACTGTGGAACAAAGGATGATCCTGGACCTACACCGAGGTATTGCCAGTGATTCTCAAATATCGCAGAACAGAATTTGATACGATGAGATAGAATGCAATAGAAAGAAAAACAGAGGGAGAGGGAACGTGCAATAGAAATAAAGACAGAGGGAGAGGGAACGGAACGGGTTACCTACTCTTATCTATCAGAACCCTTACTATTATTATTAAAGAATTCGAAATGAATCAAATCGGTTAACAGTGACTGCTCTACCACTGAGCTACTGAGGAACAACAATAAATTAGGTTTCAGAGAATTCCATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTCACTCTCGGAACTTCTTCGTAGTGGCTCAGTTCCATGCCTCATTTTATAGAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATTCCAATTAATTCCATTAATTTAATATCCCTATGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTCGTTCTATATGGAAAGTGCAATATATATATCCACAAAAATTGCAATAGAAAAGAAGGAGGTTTGTGATGATTTGCAAATCTTTTCTACTAGGTAATCTATTAAGTATCCTTATGCATGAAGATAATCAATTCGGTCGGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTATACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTAGGGCTGGAGTATGTTCCAAGGGTTGGGCTGTTCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCTGGTGTGGGCCTTAGAGCATTGAGAGGACCTTTCCCTATACGCCCACCCCAAGATGAGTGCTCTCCTATTTCGACTTCCCCAGAGCCTCTAGTAGCACAGCCGAGACAACGATGGGTTCTCTGCGGGGATGGAGCGATAGAAGGCCCTCTTATTTCTTCCTTCTCCGAGCTCTGGTTATGGAAGAAGGAACTGAGAAGAAAGTATCAGCAACAACAGGTTAGGTTTGATTACGAGACAGCTCAGTTCATATCGATCTATTATGCGCCGAAGTCTGCATCTAGCATTGGGTAG

Protein sequence

MGRFGTSMSALRHLGLEYVPRVGLFIKAVRELGSERRETVRSISGVGLRALRGPFPIRPPQDECSPISTSPEPLVAQPRQRWVLCGDGAIEGPLISSFSELWLWKKELRRKYQQQQVRFDYETAQFISIYYAPKSASSIG
Homology
[Close]
BLAST of CmaCh00G001490 vs. TrEMBL
Match: A0A0S3RYA5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G314400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-07
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP 57
          IKAVRELGSERRETVRSISGVG+RALRGPFP
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFP 40

[Close]
BLAST of CmaCh00G001490 vs. TrEMBL
Match: A0A0J8CFQ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP 57
          IKAVRELGSE RETVRSISGVG+RALRGPFP
Sbjct: 35 IKAVRELGSELRETVRSISGVGVRALRGPFP 65

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: gi|965670975|dbj|BAT85582.1| (hypothetical protein VIGAN_04314400 [Vigna angularis var. angularis])

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-07
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP 57
          IKAVRELGSERRETVRSISGVG+RALRGPFP
Sbjct: 10 IKAVRELGSERRETVRSISGVGVRALRGPFP 40

[Close]
BLAST of CmaCh00G001490 vs. NCBI nr
Match: gi|870859394|gb|KMT10843.1| (hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 26 IKAVRELGSERRETVRSISGVGLRALRGPFP 57
          IKAVRELGSE RETVRSISGVG+RALRGPFP
Sbjct: 35 IKAVRELGSELRETVRSISGVGVRALRGPFP 65

The following BLAST results are available for this feature:
BLAST of CmaCh00G001490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0S3RYA5_PHAAN6.6e-0796.77Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G314400 PE=... [more]
A0A0J8CFQ3_BETVU4.3e-0693.55Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113470 PE=4 S... [more]
BLAST of CmaCh00G001490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|965670975|dbj|BAT85582.1|9.5e-0796.77hypothetical protein VIGAN_04314400 [Vigna angularis var. angularis][more]
gi|870859394|gb|KMT10843.1|6.2e-0693.55hypothetical protein BVRB_5g113470 [Beta vulgaris subsp. vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001490.1CmaCh00G001490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001490Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G001490Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001490Cucurbita maxima (Rimu)cmacmaB018