CmaCh00G001350 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G001350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cma_Chr00 : 7638997 .. 7645132 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAATAGTTTGCCACCACTTAGAGAGATTGAACATAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGGTATGTACGTGAAAGTTTGAGTCCTTGTTCTGTTCCAGTTATTCTTGTAACTATAAAGTATAGGCATCCAATTCCCAGATTAGATGATATGCTTGATGAATTGCATGGATGTAGTCTTTTTACTAAGATTGATTTAAAATCGGGTTATCATCAAATTCGCATGCATATTGGGGATGAGTGGAAAACAGCTTTTAAAACCAAGTATGGTCTTTATGAATGGTTGGTTATGCCTTTTGGATTAACTAATGCACCTAGTACATTCATGAGACTAATGAACCATGTCTTACGAGAATACTTAGGTAAGTTTGTGGTTGTTTATTTTGATGACATCCTTGTTTACTCTAAATCTTTAGATGATCATATTACCCATGTACGCAATGTTTTGACTACTTTAAGAAATGAATGTTTGTACGTAAATTTAAAGAAATGTAGCTTTTGCATGGAAAAAGTTAACTTTCTTGGGTTTGTAGTTTCATCTAATGGTGTTGAGGTTGACGAGGAGAAAGTGAAGGCTATAAAAGATTGGCCTACACCTAAAAATGTAAGTGAGGTAAGAAGTTTTCATGGTCTTGCAAGTTTGTACCGTAGGTTTAATAAGAATTTTAGTACAATTGCTTCACCCTTGAATGAACTTGTTAAGAAAAATGTATCCTTTATATGGAAAAAAGATCAAGAACTTGCTTTTAATACTTTGAAAGAAAAATTGAGTTCTGCTCCCTTGCTTGCATTACCTAATTTTGAGTCTACTTTTGAAATTGAATGTGATGCTAGTGGAGTAGGGATAGGTGCTGTATTAATGAAAAATCAAAGACCTTTAATGTTCTTTAGTGAGAAGTTGACTGGTGCATATTTGAGGTATCCAACTTATGACAAAGAGCTTTATGCTTTGGTTCGTGCATTGCAAACCTGGCAACATTATCTTTCGCCTAAGGAGTTCATTATTCATACGGATCATGAAAGCTTAAAGCATTTGAGAGTACAAAATAAACTCAACAGACGACATGCTAAGTGGTTAGAATTTATTGAAACATTCTCTTATGTCATAAAATATAAACAAGGCAAGGAGAACATTGTTGCAGATGCATTATCACGAAGGTATGTCCTCCTCGATACTTTGAATGCTAGGTTGTTAGGTTTTGAACACATAAAGGATTTGTATCAACATGACATGTTCTTTGCTCCTTTTGTTGAATCTTGTGAAAAAGGACTCATTGTGGATAATTAGTTGTTGTTAGATGAATTTTTGTTCCGAAAAGGCAAACTTTGCATACCATCTTGTTTCATCCGTGAGCTACTTGTGAGGGAAGCTCATGGAGGTGGTTTAATGGCACACCATGGAGTTTCTAAAACTTATGATATGCTCTCTGAACATTTTTTTTTTGGCCTAAAATGAGACATGATGTTCATAAAGTTTGTGCTCTTTGCATAGCATGTAAACAAGCTAAGTCTAGGCTTCATCCACATGGTTTATACTCCCCATTACCGGTTCCTAATGGTCCTTGTATTGATATATCAATGGATTTTGTTTTAGGTTTACCTAGGACTAGGAAAGGTTATGATAGCATCTTTGTTGTGGTTGATTGATTTATTAAAATGGCTCATTTTATTCCTTGTCACAAAACTGATGATGCAAAACATATTGCAGACTTGTTCTTTAGAGAAGTTGTACGATTGCATGGCATTCCTAAAAGCATCGTTAGTGATGGTGATGTAAAATTTTTAAGCCACTTTTGGCATGTTTTATGGGGTAAGTTAGGAACTAAGCTAATATATTCAACTACTTGTCATCCTCAAACGGATGGACAAACTGAAGTTGTTAACAGAACCATGATTGCTATGCTTAGGGCTATTATTGATAAGAATCTTAAGACTTGGGAGGATTGTTTGCCCTTTATAGAATTTGCATATAATAGGGTTGTTCATAGCACTACTAAATGCACACCTTTTGAAATTGTTTATGGCTTTAATCCTTTAACCCCCCTTGACTTGTTACCCATATCGTCAAAGGAGTTTGTGAATTTTGATGCAAATGCCAAGGTTGAGTTTGTTCATAAACTGCACAAGCAAGTGAAAGAACAAATTGAGAAACAAAATTCCAAGGTTGCCACCCGAATTAATAAAGGACGTAAGTTTGTCATCTTCAAGCAAGGAGATTGGGTTTGGGTGCATTTCCGAAAAGAAAGATTTCCTACTTAAAGAAAATCTAAGCTTTTACCACGTGGAGATGGACCTTTTCAAGTTCTTGAGCGTATCGACGACAATGCTTATAAAATTGATTTACCAGGTAAGTACGGTGTTAGTACAACTTTTAATGTTGTTGATTTGAGTCTGATATGAACCACAACCAAGGAATTTCCATACCTGAAGGTCCAATTACAAGGACGAGAGCTAAGAAGCTACAACAAACCTTATACAGTTATATTCAAGCTATGGTGAGCTCATCAAAGGAAATTCTAGAAGACGCTGGAGACCTCCCTTATATGTTGTGCAAAGTTGAGCTTCAAAAAAGAGATGAATTAAATGCACTTTAAGTTGTATTTAATGAACTCCACTGAATTTACGAAACTAGTCTAAGGATGAGTCAATAAGCACATTTTATTAATTGCATTATTTTATTATAGTTTAAATATTTGTTTGTCATATTTAAGCTAGTTTTAAATATAGGAGTTAAGGTTATATTGTAACCCACATAGGTTACTATATTCCACCATTAACTAGCCATTTTAATATGGAGGTTTTTAAATATAGGAGTTAAGGTTATATTGTAACCCACATAGGTTACTATATTCCACCATTAACTAGCCATTTTAATATGGAGGTTATGGGTATTTTTCATTTACTAGCGCATTTAATTTGGGAGTTATATATCCATAGGTTAAGGTTGTAAGGGCTATATAAAGCCTTCTTTTCTTTGATTAGACATCAGATTTTGAAATTAAGAATAGAATTTCTATTTTAGCTTTGTTGAGAGCTAAACTTTCTTTGCAAATTCTTGTGTTTAGAACTTGCATGTAGAGTCATTCAAGTGGTATTGATCAAACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACGAGTTTTCTTTACTCTTGATCTTGATCATCAAGGTAATCCGTTCCATACTTTCCCTTGGAACCGATACCCATATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCATTGTGCTTATCTCTTTTAATTCTCTTATAATTTTTTTTTCTCTCAGTTTGTGTAGAATGTTCATGTTCTATCACAAAAATATATAACAAAAAAAAAAAAAAAATCTTATGTTCTTTAAAGTGTTAGATCTGGATCTTATCAACACTTTGTTCTTCTTTAAGATCTTCTAAATCAATTTTCTTGTTGGTAAATTGATTATATTTTGCCAATCAGAAGAAAAAAAAAAAACCATTGAAAGAAAGAAAGCATATTGATGTTAAATGTCTTTTTTTTTCCCCTTGATTATTATATGTAACTCTCATATGTTACTACGTCTACATTAGTCCTTAATCATTTTCTTTCTTTAATTCGTTTCTTTGTCGTTATTCGGATTACTCCTTAAATACCCTTGTGTATGTCTTGAGTGTGCTGTCTATTCACTTTGAATTGCACTTAGCTCTATAACATAGCTTGTCTCACATCCCAATTTATTTTTTGGAGTGTGATTTGTGTGTGCTCAATTGTGAGGGTGAGTTTGTAAGGGAGTGACATATTGATTCGAGTGTTGAGTGCTAAACACGAGTGAACTACATTTACGAGTGAATACACGTGAGGGAGTGCTTGTGAGGTCCTTTTTTTTTTCTTTTACCTTTTTTTTTTTTTTGTAGCATGGAAAATCCAGAGGACAATACTGACATTACTGATGCATGATTGAGAGAAGCCCAACAACGAACCATGGAAAGACTAATTCGAGGAATAAAAGCGTTGACTGATCGAATAGGCAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCACTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCAAGGGAGAGACCATGGAAGAAGGTATCATAATTTATAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCTCAAGTTTTATGGAAAAACTGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCGTAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAAGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTACGATCGAGAGGCAAATCCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTTCCAATTCTACTTCTACATGAAAAATGGATAGTAAGAACATTGATTATACGCATAGAAATCAAGAGATTAATGAGAAGACTCAAGCTAAATTTGAGAAAGGGGAGAGTTCGAGAACAGGGAAAGAAAAAGTAGAAAAGTCTAATGTTCGAAATAGAGATTTAAAGTGTTGGAGATGTCAAGGGGTAGGACACTATAGTAGAGATTGCCCAAATGCAAGAATTATGACCATCAAGGAGGGAGAAATTGTTACGGATGACGAGGCACATGACGACATAAATGAGGAAACTGATGAGAGTGAGGAGTTTAGTGAAGAGGACCCTACACATATATCTTTGGTTACTCGACGAGCTCTAAACACCCATATTAAGGAGGACGGCCTAGACCAAAGGGAGAACTTGTTGCAAACTCGGTGTCTTGTTCAATCTGTACCATGTAGTGTTGTAATTGATAGCGGTAGTTGCACCAATGTTGTGAGTTTCATTCTAGTCAAAAGACTTAATTTAAAGACACAATCACATCCAAGACCCTACAAGCTTCAATGGTTGAATGATTGTGGGAAAGTACGGGTAACTCAACAAACTCTTGTTTTCTTTACTATTGGAAAATATGTTGATGATGTTTTATGTGATGTTGTATCCATGCATGTTGGAGATTTACTACTTGGGAGGCCTTGGCAATTTGATCGTCGGGTAATGTATGATGGGTATGCAAATCGATACTCTTTTACTCACAACGGTAGAAAAACTACTCTTATTCCATTGTCTCCAAAAGATGTATTTATTGATCATTGCAAACTTGAAAAGAAAAGGCAAGAGGCTGATGCAAAAGCAGAGATTGAAAAAGAATCAAGTGAAAAAAAGAGCTTGAGGGAAAAGCAAGAGAGTAACACTCAGCCTAGAGAAAAAAAAAGAGAGAAAAGCCAAATCAGTAAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGATCTCTAACCAGACTATTCTTGTACTTATGTGCAAGGGATCTTGTTACTTTACTAACATGCTTAACCCTTCATTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTTAA

mRNA sequence

ATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAATAGTTTGCCACCACTTAGAGAGATTGAACATAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCTCAAGTTTTATGGAAAAACTGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCGTAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAAGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTACGATCGAGAGGCAAATCCAACGAAGGTCTCAACGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTTAA

Coding sequence (CDS)

ATGCTTAACCCTTCTTTGCCTAGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAATAGTTTGCCACCACTTAGAGAGATTGAACATAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTGAAGAGATACAAAGGCAAGTAAGTGAACTCCTTGCTAAAGGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCTCAAGTTTTATGGAAAAACTGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCGTAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGCAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAAGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCAGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTACGATCGAGAGGCAAATCCAACGAAGGTCTCAACGTGATTTTGTTGTGCTTTTGCAAGAGTTTGAAGATTTATTTTCCGAGGAGAAGCCTAGTAGTTTGCCACCACTTAGAGGGATTGAACACAAGATTGACTTCATTCCTGGCGCGCCCATTCCAAACCGACCAGCTTATAGGACTAATCCAAAGGAGGCTTAA

Protein sequence

MLNPSLPSDFVVLLQEFEDLFSEEKPNSLPPLREIEHKIDFIPGAPIPNRPAYRTNPKEAEEIQRQVSELLAKGIDRNVGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQRDFVVLLQEFEDLFSEEKPSSLPPLRGIEHKIDFIPGAPIPNRPAYRTNPKEA

Homology

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BLAST of CmaCh00G001350 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.9e-47
Identity = 97/215 (45.12%), Postives = 142/215 (66.05%), Query Frame = 1


Query: 58  KEAEEIQRQVSELLAKGIDRNVGS-------------------IKLKLLKFYGKTDPEEY 117
           ++ E++Q+++ EL  +  + N GS                   IK+K+  F GK+DPE Y
Sbjct: 29  EQGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQGGDNLRGIKIKVPTFVGKSDPEAY 88

Query: 118 LQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKE 177
           L+WE  +E +FNC N+S+ +KV +   +FK+YA +WWD+L   RRR  E PID+W E K 
Sbjct: 89  LEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRRYAERPIDTWEEMKR 148

Query: 178 SMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGL 237
            MR+RFVP Y+HR++  KLQ L QG KSVE+Y+KEM+ L  R  ++ED EA MARFL+GL
Sbjct: 149 IMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMARFLHGL 208

Query: 238 NTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQ 254
           N +I+D  +L  Y  ++EL+H AI +E+Q++R+SQ
Sbjct: 209 NHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQ 243

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BLAST of CmaCh00G001350 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.9e-47
Identity = 96/215 (44.65%), Postives = 143/215 (66.51%), Query Frame = 1


Query: 58  KEAEEIQRQVSELLAKGIDRNVGS-------------------IKLKLLKFYGKTDPEEY 117
           ++ E++Q+++ EL  +  + N GS                   IK+K+  F GK+DPE Y
Sbjct: 29  EQGEQLQQRIDELERRPQNSNDGSGDEEERRRRRRQRGDNLRGIKIKVPTFVGKSDPEAY 88

Query: 118 LQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKE 177
           L+WE  +E +FNC N+S+ +KV +   +FK+YA +WWD+L+  RRR  E PID+W E K 
Sbjct: 89  LEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRRYAERPIDTWEEMKR 148

Query: 178 SMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGL 237
            MR+RFVP Y+HR++  KL+ L QG KSVE+Y+KEM+ L  R  ++ED EA MARFL+GL
Sbjct: 149 IMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMARFLHGL 208

Query: 238 NTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQ 254
           N +I+D  +L  Y  ++EL+H AI +E+Q++R+SQ
Sbjct: 209 NHDISDIVELHHYVEMDELVHQAIKVEQQLKRKSQ 243

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BLAST of CmaCh00G001350 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.9e-47
Identity = 93/200 (46.50%), Postives = 143/200 (71.50%), Query Frame = 1


Query: 61  EEIQRQVSELLAKGIDRNVGSIKLK----LLKFYGKTDPEEYLQWEKTVESVFNCRNFSD 120
           +++ RQ + + +   +R   S+ L+    +  F GK +PE YL+WEK VE +F C N+S+
Sbjct: 39  DQMDRQDAVIASLREERTQKSLMLEGKEGIPSFQGKNNPEVYLEWEKKVEFIFECHNYSE 98

Query: 121 EKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQK 180
           EKKV L + +F  YA IWWD+L+ +RRRN E PI++W E K +MR+ FVP +++RD+ QK
Sbjct: 99  EKKVKLAVIEFTDYAIIWWDQLVMNRRRNYERPIETWEEMKATMRRWFVPSHYYRDLYQK 158

Query: 181 LQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEE 240
           LQ+L QG +SV+DY+KEM+  M R  ++ED EA MARFLNGLN +IA+  +LQ Y ++E+
Sbjct: 159 LQSLTQGYRSVDDYHKEMEIAMIRANVEEDREATMARFLNGLNWDIANVVELQHYVDLED 218

Query: 241 LLHIAITIERQIQRRSQRDF 257
           ++H+AI +E++++R+  R F
Sbjct: 219 MVHMAIKVEQRLKRKETRSF 238

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BLAST of CmaCh00G001350 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.2e-46
Identity = 88/166 (53.01%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 91  GKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPI 150
           GK  PE YL+WEK VE +F C N+S EKKV L + +F  YA IWWD+L+ ++RRN E PI
Sbjct: 202 GKMIPEVYLEWEKKVEFIFECHNYSKEKKVKLAVIEFTNYAIIWWDQLVMNKRRNYERPI 261

Query: 151 DSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEAL 210
           ++W E K +MR+RFVP +++RD+ QKLQ+L QG +SV+DY+KEM+  M R  ++E+ EA 
Sbjct: 262 ETWEEMKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREAT 321

Query: 211 MARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQRDF 257
           MARFLNGLN +IA+  +LQ Y  +E+++H+AI +ERQ++R+  R F
Sbjct: 322 MARFLNGLNRDIANVVELQHYVELEDMVHMAIKVERQLKRKETRSF 367

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BLAST of CmaCh00G001350 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.5e-45
Identity = 99/253 (39.13%), Postives = 159/253 (62.85%), Query Frame = 1


Query: 5   SLPSDFVVLLQEFEDLFSEEKPNSLPPLREIEHKIDFIPGAPIPNRP--AYRTNPKEAEE 64
           +L +    LL    + F +E  NS P       +    P  P+ +R   +Y +       
Sbjct: 361 ALTATMTKLLDARLEAFRQEHINSDPDRDRTRRE----PRDPVDDRDTMSYYSQSSRQTN 420

Query: 65  IQRQVSELLAKGIDRN-VGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVL 124
            +R+  +   + + R+ +  +K+++  F G  DP+EYL+WEK +E VFNC+ +++E KV 
Sbjct: 421 HRRRRHDREERVLPRDDLAGLKIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESKVK 480

Query: 125 LCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALK 184
           +   +F+ YA  WWD+L+++RRR  + PI+SW + K  MRKRFVP +++R++  +L+ L 
Sbjct: 481 VAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRFVPSHYYRELHNRLRNLV 540

Query: 185 QGRKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIA 244
           QG KSVE+YYKEM+TLM R ++ ED EA+M+RF+ GLN +I D+ ++Q Y  +EELLH A
Sbjct: 541 QGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLHKA 600

Query: 245 ITIERQIQRRSQR 255
           I  E+Q++RRS +
Sbjct: 601 IMFEKQLKRRSSK 609

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BLAST of CmaCh00G001350 vs. TAIR10
Match: AT1G40129.1 (AT1G40129.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-07
Identity = 36/150 (24.00%), Postives = 69/150 (46.00%), Query Frame = 1


Query: 92  KTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPID 151
           ++  E+YL+WEK ++  F+ +NF  E + +  ++     A  WW + +  R    E PI 
Sbjct: 85  QSRKEDYLEWEKNMDEWFSYKNFLSEMRFVCALSHLTGNAYKWWLQEVEDRLYYKEPPIT 144

Query: 152 SWVEFKESMRKRFVPQYFHRDMAQKLQA---LKQGRKSVEDYYKEMDTLMDRLELDEDME 211
            W + KE +R ++  Q  +R     + A     Q ++ V   Y + + + ++   DE   
Sbjct: 145 LWRDLKEFLRNKYALQVSNRSRKVSITAQGLAAQEKEQVLAPYSKKNPIAEQQLKDE--- 204

Query: 212 ALMARFLNGLNTEIADKTDLQPYSNIEELL 239
             + + LN  N     K+  QP    +E++
Sbjct: 205 --ILKILNAYNKPKKAKSTSQPKMVTKEVV 229

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BLAST of CmaCh00G001350 vs. NCBI nr
Match: gi|697104976|ref|XP_009606298.1| (PREDICTED: uncharacterized protein LOC104100699 [Nicotiana tomentosiformis])

HSP 1 Score: 223.0 bits (567), Expect = 7.1e-55
Identity = 109/222 (49.10%), Postives = 148/222 (66.67%), Query Frame = 1


Query: 84  LKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRR 143
           +K+  F G  DP+ YL WE+ VE +F+C N+S+ KKV L I +F  YA IWW KL   R 
Sbjct: 1   MKMPSFRGTRDPDLYLDWERKVEPIFDCHNYSEGKKVKLAIVKFSDYAVIWWKKLTRDRL 60

Query: 144 RNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLEL 203
           +  +API  W E K  +RKRF+P +F R++ Q+LQ LKQG  SV++Y+K MD  M +   
Sbjct: 61  QEGQAPITIWAEMKRVVRKRFIPAHFQRELQQRLQTLKQGSMSVDEYFKAMDMAMIQANC 120

Query: 204 DEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQRDFVVLLQEF 263
            E+ EA MA FLNGLN EI D  +LQ +  I+EL+ +++           +DF   LQ+F
Sbjct: 121 MEEEEATMASFLNGLNKEIIDVVELQQHVTIDELVDLSV-----------KDFEEXLQDF 180

Query: 264 EDLFSEEKPSSLPPLRGIEHKIDFIPGAPIPNRPAYRTNPKE 306
           ED+F E+ P+ LPPLRGIEH+IDF+PG+ IPNR AYR+NP+E
Sbjct: 181 EDVFPEDIPNGLPPLRGIEHQIDFVPGSQIPNRHAYRSNPEE 211

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BLAST of CmaCh00G001350 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 107/216 (49.54%), Postives = 156/216 (72.22%), Query Frame = 1


Query: 72  AKGIDRNVGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYA 131
           A  +DR++GSIKLK+  F GK DPE YL+WEK VE VF+C N+S+EKKV L   +F  YA
Sbjct: 92  ASRMDRDLGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYSEEKKVKLAAVEFTDYA 151

Query: 132 QIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYY 191
            IWWD+L+ SRRRN E PI++W E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+
Sbjct: 152 IIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYH 211

Query: 192 KEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRR 251
           KEM+ +M R  ++E+ EA MARFL+GLN +IA+  DLQ Y  +E+++H+A+ +ERQ++++
Sbjct: 212 KEMEIIMIRANIEEEREATMARFLHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKK 271

Query: 252 -SQRDFVVLLQEFEDLFS-EEKPSSLPPLRGI-EHK 285
            S R  +     ++  +S +EK  S P +  I +HK
Sbjct: 272 GSTRTNLGSSSSWKSKWSKDEKVVSKPKIEPIKDHK 307

[Close]

BLAST of CmaCh00G001350 vs. NCBI nr
Match: gi|985466622|ref|XP_015389621.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sinensis])

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 107/216 (49.54%), Postives = 155/216 (71.76%), Query Frame = 1


Query: 72  AKGIDRNVGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYA 131
           A+ IDR++GSIKLK+  F GK DPE YL+WEK VE VF+C N+  EKKV L   +F  YA
Sbjct: 92  ARRIDRDLGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYFKEKKVKLAAVEFTDYA 151

Query: 132 QIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYY 191
            IWWD+L+ SRRRN E PI++W E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+
Sbjct: 152 IIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYH 211

Query: 192 KEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRR 251
           KEM+ +M R  ++E+ EA MARFL+GLN +IA+  DLQ Y  +E+++H+A+ +ERQ++++
Sbjct: 212 KEMEIIMIRANIEEEREATMARFLHGLNQDIANVIDLQYYVELEDMVHMAMKVERQLKKK 271

Query: 252 -SQRDFVVLLQEFEDLFS-EEKPSSLPPLRGI-EHK 285
            S R  +     ++  +S +EK  S P +  I +HK
Sbjct: 272 GSTRTNLGSSSSWKSKWSKDEKVVSKPKIEPIKDHK 307

[Close]

BLAST of CmaCh00G001350 vs. NCBI nr
Match: gi|731403219|ref|XP_010654970.1| (PREDICTED: LOW QUALITY PROTEIN: transposon Tf2-1 polyprotein [Vitis vinifera])

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 106/243 (43.62%), Postives = 153/243 (62.96%), Query Frame = 1


Query: 74  GIDRNVGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYAQI 133
           G DRN+G+IK+K+  F GK DP+ YL+WEK VE +F CRN+S+EK V L + +F  YA  
Sbjct: 88  GTDRNLGNIKIKIPSFQGKNDPKVYLEWEKKVEFIFECRNYSEEKNVKLAVIEFTDYAIX 147

Query: 134 WWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKE 193
           WWD+L+ +RRRN E PI++W E K +MR+RFVP +++RD+  KLQ+L    +SV+DY+KE
Sbjct: 148 WWDQLVMNRRRNYERPIETWEEMKATMRRRFVPSHYYRDLYXKLQSLTHDYRSVDDYHKE 207

Query: 194 MDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRRSQ 253
           M   M    ++ D +A MARFLNGLN +I +  +LQ Y  +E+++H+ I +ERQ++R+  
Sbjct: 208 MKIAMIWANVENDRKATMARFLNGLNRDITNVVELQHYVELEDMVHMTIKVERQLKRKGT 267

Query: 254 RDFVVLLQEFEDLFSEEKP-----------SSLPPLRGIEHKIDFIPGAPIPNRPAYRTN 306
           R F     +  D  +   P           S   P +  +   +   GA IPNRP  R+N
Sbjct: 268 RLF-----QNPDFSASWTPNGRKDEGVVFKSKTEPPKMRDEAPNVNKGATIPNRPTNRSN 325

[Close]

BLAST of CmaCh00G001350 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 206.8 bits (525), Expect = 5.2e-50
Identity = 107/216 (49.54%), Postives = 156/216 (72.22%), Query Frame = 1


Query: 72  AKGIDRNVGSIKLKLLKFYGKTDPEEYLQWEKTVESVFNCRNFSDEKKVLLCIAQFKQYA 131
           A+ IDR++GSIKLK+  F GK DPE YL+WEK VE VF+C N+S+EKKV L   +F  YA
Sbjct: 92  ARRIDRDLGSIKLKIPSFQGKHDPEAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYA 151

Query: 132 QIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYY 191
            IWWD+L+ SRRRN E PI++W E K  MR+RFVP +++R++ Q+LQ+L QG +SVEDY+
Sbjct: 152 IIWWDQLVLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYH 211

Query: 192 KEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAITIERQIQRR 251
           KEM+ +M R  ++E+ E  MARFL+GLN +IA+  DLQ Y  +E+++H+A+ +ERQ++++
Sbjct: 212 KEMEIIMIRANIEEERET-MARFLHGLNQDIANVVDLQHYVELEDMVHMAMKVERQLKKK 271

Query: 252 -SQRDFVVLLQEFEDLFS-EEKPSSLPPLRGI-EHK 285
            S R  +     ++  +S +EK  S P +  I +HK
Sbjct: 272 GSTRTNLGSSSSWKSKWSKDEKVVSKPKIEPIKDHK 306

The following BLAST results are available for this feature:

BLAST of CmaCh00G001350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh00G001350 vs. TrEMBL


Match Name	E-value	Identity	Description
E7BQD6_PEA	2.9e-47	45.12	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]
E7BQD7_PEA	4.9e-47	44.65	Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1	[more]
A5AZG1_VITVI	4.9e-47	46.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1	[more]
A5AMK2_VITVI	4.2e-46	53.01	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
Q9LQH2_ARATH	3.5e-45	39.13	F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of CmaCh00G001350 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G40129.1	3.4e-07	24.00	unknown protein	[more]

BLAST of CmaCh00G001350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|697104976\|ref\|XP_009606298.1\|	7.1e-55	49.10	PREDICTED: uncharacterized protein LOC104100699 [Nicotiana tomentosiformis]	[more]
gi\|568833665\|ref\|XP_006470999.1\|	2.1e-51	49.54	PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis]	[more]
gi\|985466622\|ref\|XP_015389621.1\|	1.1e-50	49.54	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sin...	[more]
gi\|731403219\|ref\|XP_010654970.1\|	1.1e-50	43.62	PREDICTED: LOW QUALITY PROTEIN: transposon Tf2-1 polyprotein [Vitis vinifera]	[more]
gi\|985456365\|ref\|XP_015387373.1\|	5.2e-50	49.54	PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G001350.1	CmaCh00G001350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 126..220 score: 3.9
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 74..270 score: 6.9
None	No IPR available	PANTHER	PTHR22847:SF430	MZB10.11 PROTEIN-RELATED	coord: 74..270 score: 6.9
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 13..79 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G001350	Cucurbita maxima (Rimu)	cmacmaB004
CmaCh00G001350	Cucurbita maxima (Rimu)	cmacmaB018
CmaCh00G001350	Cucurbita moschata (Rifu)	cmacmoB000