CmaCh00G001320 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I P700 chlorophyll A apoprotein A2
LocationCma_Chr00 : 7626848 .. 7633241 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATGTCGCTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACGTATTGTGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTGATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTGAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGCAATTCTATGTAGTTTAGGCTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCCTACTCCCCTTGTAGTGGTTCCTTTTCTTATCATTTGGTATCATAGCTTAAGGCTCAAGATCGGATATATGTTTCCTTTGCATTTCTTTTCAATTTGTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAATGAAATATGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGAAAAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAATGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGTCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATCTATGTATTTTAAGACTTTATTTACTATACGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCATTTTTTTTTTTCAATTTGATTTTTATTTATTTTTATCCTTTTAGTTTTTAATCGACCCAGAATTCAAAATTCAATCTTTGCTCTATTTCAAATTTTGAGAGGTGAGAATGAGAGCTTCATTTGTGTAACTGAGTTTAAAAAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGGAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTTTCTTATCATATTGCCACATCCCCAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTTCTAGCTGACTGATATGGCTCATCTTCATTTAGCTATTGCATTTCTTTTTCTTGTTGCTGGTCATATGTATAGATAGAACTAACTTCGGGGTTGGACAAAGTATAAAAGATCTTTTAGAAGCACATATTCGGGGGACGATTTGGGCGTGGACATAAAGTTATGACACAATCAATAATTCTCTTCATTTTCAATTAGGCCTTACTTTAGCCTCTTTAGGGGTTATTAGATTACATTACTGACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATGTAATGTATTGGCAAGAATGTTAGACCATAAAGAAAAGAAGCTATCATATATATATCCCATTGAAGTTGGGCCAGCCTTTTTCTGGGGGTTCCATACTTTGGGGCTTTAGGTTCGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAAGAAATCTTAATCGACACCCATATTTGCCCAATAGATTCAATCTGCTCATGGTCAAACTGAATATAGGTTCGATGTCCTTTTATCTTCAACAAGCGGCCTGACGTTCAATGCTGTTAAATAGTAATGCACTATTCTTCACAATAGGGCCCGAAGACTGATTGGTTCATCATGCTATTGCTTTAGGGTTACATATAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGGACATGGTTCCAAATGAATGCCGGATAAAAAGGATTTTGGCTATAGTTTTCCTTGGTCTGGGACGAGGTGGTACTTGTTATATTTCAGCTTGAGACGCCTTTGGCCGTTTTCTGGATGTGAAATACCATTGGCTACTTTAGATTGGCACTGGAAGCACATCACATTGTGTATGGCATGGTAACGTTTCACAGTTTCATTCATCTTTCACTTACTTATTTGCTGGGATGGTTAAGAGATTCTTTATGGTTAAACTCTTCACAACTTCTCAATGGGATAATTAGAATTAATCCTTGTTGGTATGAATAGTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAAGAAGAATTGATTGAAACTTTAGTGTGGGCTCACGAACGCACACCCTTGGCTAATTTGATTTGAGAGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGTTACATATTGACTTATGCGGCTTTCTGCCTCTACATCAGGCTAATTTGGTTCATTTTGTATGTGTTGTATCCTATCAAATCTCATCTCTTTGGAGAAGGGGATCTTCTTTCTTATATTTCTACATCTAGGATCTGACTTGTATCATTGATACTACTAGGAATGGAATCATTATGGCAAGGAAAAGTGTAATAGGGAGAGGGAGAAGAAGAGGGCAAAATTGGAACACAAATCTGATTCGTCCATCCTTAAAAAAAGAAATAAGCAAAGTTCCATCCTTGAGTGAGAAATGGGAAATTCATGGCAAGTGACAATCCCCACCGCGTAATAGTGCACCCACACGTCTTCATCGACCGACGTTGTTTTTTCACCGGAAGACCGAGAGCTAACGATCGAGACTTTCTTTGGGCTATCTGGACACATACAGACTTATACTTCGGGAAATGGTTCATGCATGCTTGTTGCCTGGGAGAAGGAAGAAGATCAAGGATTCAAATAGCCCTTTCTATTCATTTCTATTATCACGACCCCCTTTCTTTCTTTCTTTACCATTCTCTGTATAAATCTTGACTATTCTATTTGTAAAGATATGGTTATAGGGGCGCGCATTCAATCTTTCTTTGTCTATTAGTTCACAGTTCTTCTCTTCGCGGGGTGGAGCAGCTTGGTAGCTCACAAGGCTCATAACCTTTCAGTCATGAGTTCAAATCCTGTCTCCGCTCAATCTCATTTTGATAAAATGTACCACGTAGAGATTGAAATGTATTCTTCTATATTACTTCCTTCTTTTTTAAGACTTGAGCATGTATGGGATTCAGGGTAGTAGTCTTTTTTTCATTCAGAAATAAGGGGGATACTCGATCATATATATCTAGATCCATATAAATAGACTTCTAGATTTACGACTGAGATACAGTCTAGACTATAATGGTCTCAACTTATATGTCAATGTTCTATTCTATTCGGTGGGATGGGATATAAAGAAAATGGAAATTCTCTTTCGGAGAGATGGCCGTGTGGTTGATAGCTCCGGGCTTGAAAACCGGTCTTGTATAGTGTTCGAATAAAGAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGCTCGGCAAATAGATTCTTTATTTGATTGGGTTTGTTTCCCCGGCTCAATATCATAAAGGGGAATGGTTCGGCTAGGTGGGATAGATAGCCCAGCCAAAATAGAAAACAAAGAGTAGATAGAAATGAAGAAAGGAAAAAGGAATTGATCGTTTGAATCTATTCTTTTCATGACCTGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

mRNA sequence

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

Coding sequence (CDS)

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTGGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATATCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACATACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTACCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCAAATCTCGTCTCAATCATCATTTGTCAGGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGAGAACCAACCCAGTGACTCTTTCTTTCCATTGTGCAAGATTTGTTGGATTAGCCCCCTTTTCCGTAGGAATTTCGGTAGCTACGCCACCCCCAGAATTGAAAGAACCTAAAGGAGCGCATGGGGCATATATTCCGCAGAACGTCATTCTTGCCAAGGTTGTATATCTTTGCTTGCCTACTCAAGTCCAAACCATTAGGCCCCCTTACTTAGTGGTTCTAACCAAGGAGCACGCGGATCCAAAAAACGCATAG

Protein sequence

MKSCSCYSQPRALIEHCPRTCCRSNPSITLPSGWNCHNIGTLSLLSKNYCSRIMARRICIMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLSVYTSINIFHVAWQGNFEAWVQARPFPCKTYLQFWILGQPEKLLLEGVLPVNIAYSGVSFFLSGGIQSGYILRGIFIWEGSSSFSILSFYHIFHSGLVTPTTEIESEPFVVSKCQISSQSSFVRTIHLESVPWLGQAISAILSVRGRGCSYLDILFGLLDFYSEFPGGGILRTNPVTLSFHCARFVGLAPFSVGISVATPPPELKEPKGAHGAYIPQNVILAKVVYLCLPTQVQTIRPPYLVVLTKEHADPKNA
Homology
[Close]
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match: PSAB_LOTJA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match: PSAB_CUCSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match: PSAB_EUCGG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match: PSAB_SOYBN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Glycine max GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match: PSAB_PELHO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum GN=psaB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-29
Identity = 78/125 (62.40%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. TrEMBL
Match: F4YK62_9ERIC (Photosystem I P700 apoprotein A2 (Fragment) OS=Franklinia alatamaha GN=psaB PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 80/124 (64.52%), Postives = 87/124 (70.16%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQARPFPCKTYLQ-FW--ILGQP--EKLLLEGVL-PVNIA 178
            ++TS N+FHVAWQGNFE+WVQ  PF CK      W    GQP  E     G L PVNIA
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQ-DPFTCKAIAHAIWDPHFGQPAVEAFTRGGALGPVNIA 120

[Close]
BLAST of CmaCh00G001320 vs. TrEMBL
Match: A7M965_CUSRE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta reflexa GN=psaB PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.7e-28
Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLYH++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYHNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. TrEMBL
Match: G7J0Z5_MEDTR (Photosystem I P700 chlorophyll A apoprotein A2 OS=Medicago truncatula GN=MTR_3g035600 PE=3 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 769 IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 828

Query: 120 LSVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 178
           + ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 829 IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 888

[Close]
BLAST of CmaCh00G001320 vs. TrEMBL
Match: A0A0N9XN80_9ROSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Ficus racemosa GN=psaB PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.8e-28
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 4   IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 63

Query: 120 LSVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 178
           + ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 64  IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 123

[Close]
BLAST of CmaCh00G001320 vs. TrEMBL
Match: A0A120IGP0_9ROSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Ceanothus herbaceus GN=psaB PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.3e-28
Identity = 78/123 (63.41%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL+QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLSQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ--ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIAY 178
            ++TS N+FHVAWQGNFEAWVQ   R  P    +     GQP  E     G L PVNIAY
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLRVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAY 120

[Close]
BLAST of CmaCh00G001320 vs. TAIR10
Match: ATCG00340.1 (ATCG00340.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-30
Identity = 77/125 (61.60%), Postives = 85/125 (68.00%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. NCBI nr
Match: gi|306486078|gb|ADM92685.1| (photosystem I P700 apoprotein A2 [Franklinia alatamaha])

HSP 1 Score: 137.9 bits (346), Expect = 3.6e-29
Identity = 80/124 (64.52%), Postives = 87/124 (70.16%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQARPFPCKTYLQ-FW--ILGQP--EKLLLEGVL-PVNIA 178
            ++TS N+FHVAWQGNFE+WVQ  PF CK      W    GQP  E     G L PVNIA
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQ-DPFTCKAIAHAIWDPHFGQPAVEAFTRGGALGPVNIA 120

[Close]
BLAST of CmaCh00G001320 vs. NCBI nr
Match: gi|156618825|ref|YP_001430107.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta reflexa])

HSP 1 Score: 134.0 bits (336), Expect = 5.3e-28
Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLYH++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYHNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 178
            ++TS N+FHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

[Close]
BLAST of CmaCh00G001320 vs. NCBI nr
Match: gi|922374972|ref|XP_003599572.2| (photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula])

HSP 1 Score: 133.7 bits (335), Expect = 6.9e-28
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 769 IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 828

Query: 120 LSVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 178
           + ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 829 IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 888

[Close]
BLAST of CmaCh00G001320 vs. NCBI nr
Match: gi|944542081|ref|YP_009176004.1| (photosystem I P700 apoprotein A2 (chloroplast) [Ficus racemosa])

HSP 1 Score: 133.7 bits (335), Expect = 6.9e-28
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 4   IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 63

Query: 120 LSVYTSINIFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 178
           + ++TS N+FHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 64  IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 123

[Close]
BLAST of CmaCh00G001320 vs. NCBI nr
Match: gi|984911999|gb|AMC31436.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Ceanothus herbaceus])

HSP 1 Score: 133.3 bits (334), Expect = 9.0e-28
Identity = 78/123 (63.41%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL+QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLSQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINIFHVAWQGNFEAWVQ--ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNIAY 178
            ++TS N+FHVAWQGNFEAWVQ   R  P    +     GQP  E     G L PVNIAY
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLRVRPIAHAIWDPHFGQPAVEAFTRGGALGPVNIAY 120

The following BLAST results are available for this feature:
BLAST of CmaCh00G001320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAB_LOTJA1.3e-2962.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Lotus japonicus GN=psaB PE=3 S... [more]
PSAB_CUCSA1.3e-2962.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Cucumis sativus GN=psaB PE=3 S... [more]
PSAB_EUCGG1.3e-2962.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo... [more]
PSAB_SOYBN1.3e-2962.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Glycine max GN=psaB PE=3 SV=1[more]
PSAB_PELHO1.3e-2962.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum GN=psaB P... [more]
BLAST of CmaCh00G001320 vs. TrEMBL
Match NameE-valueIdentityDescription
F4YK62_9ERIC2.5e-2964.52Photosystem I P700 apoprotein A2 (Fragment) OS=Franklinia alatamaha GN=psaB PE=3... [more]
A7M965_CUSRE3.7e-2862.40Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta reflexa GN=psaB PE=3 S... [more]
G7J0Z5_MEDTR4.8e-2862.70Photosystem I P700 chlorophyll A apoprotein A2 OS=Medicago truncatula GN=MTR_3g0... [more]
A0A0N9XN80_9ROSA4.8e-2862.70Photosystem I P700 chlorophyll a apoprotein A2 OS=Ficus racemosa GN=psaB PE=3 SV... [more]
A0A120IGP0_9ROSA6.3e-2863.41Photosystem I P700 chlorophyll a apoprotein A2 OS=Ceanothus herbaceus GN=psaB PE... [more]
BLAST of CmaCh00G001320 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00340.12.1e-3061.60ATCG00340.1 Photosystem I, PsaA/PsaB protein[more]
BLAST of CmaCh00G001320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|306486078|gb|ADM92685.1|3.6e-2964.52photosystem I P700 apoprotein A2 [Franklinia alatamaha][more]
gi|156618825|ref|YP_001430107.1|5.3e-2862.40photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta reflexa][more]
gi|922374972|ref|XP_003599572.2|6.9e-2862.70photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula][more]
gi|944542081|ref|YP_009176004.1|6.9e-2862.70photosystem I P700 apoprotein A2 (chloroplast) [Ficus racemosa][more]
gi|984911999|gb|AMC31436.1|9.0e-2863.41photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Ceanothus herbaceu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009579thylakoid
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009536 plastid
cellular_component GO:0009579 thylakoid
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001320.1CmaCh00G001320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3DG3DSA:1.20.1130.10coord: 65..177
score: 3.9
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 68..151
score: 6.8
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 65..191
score: 1.31
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 63..177
score: 6.0
NoneNo IPR availablePANTHERPTHR30128:SF4PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2coord: 63..177
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001320Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001320Cucurbita maxima (Rimu)cmacmaB018
CmaCh00G001320Cucurbita moschata (Rifu)cmacmoB000