CmaCh00G001310 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001310
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCma_Chr00 : 7619558 .. 7620126 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAATCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

mRNA sequence

ATGGAAGAAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

Coding sequence (CDS)

ATGGAAGAAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTCAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACGAAAATTTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCACGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTAATTTACAGCCTTACATGCTATGCAACGAGCACAAACTTTATGTACATCATGTCTCATTTTAG

Protein sequence

MEEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTNLQPYMLCNEHKLYVHHVSF
Homology
[Close]
BLAST of CmaCh00G001310 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-38
Identity = 76/137 (55.47%), Postives = 103/137 (75.18%), Query Frame = 1 

Query: 4   EEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVE 63
           E YL+WEK VE +F CHN+S+EKKV L + +F  YA IWWD+L+ +RRRN E PI++W E
Sbjct: 78  EVYLEWEKKVEFIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRNYERPIETWEE 137

Query: 64  FKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFL 123
            K +MR+ FVP +++RD+ QKLQ+L QG + V+DY+KEM+  M R  ++ED EA MARFL
Sbjct: 138 MKATMRRWFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEEDREATMARFL 197

Query: 124 NGLNTEIADKTNLQPYM 141
           NGLN +IA+   LQ Y+
Sbjct: 198 NGLNWDIANVVELQHYV 214

[Close]
BLAST of CmaCh00G001310 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 76/140 (54.29%), Postives = 104/140 (74.29%), Query Frame = 1 

Query: 1   MEEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDS 60
           M  E YL+WEK VE +F CHN+S EKKV L + +F  YA IWWD+L+ ++RRN E PI++
Sbjct: 204 MIPEVYLEWEKKVEFIFECHNYSKEKKVKLAVIEFTNYAIIWWDQLVMNKRRNYERPIET 263

Query: 61  WVEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMA 120
           W E K +MR+RFVP +++RD+ QKLQ+L QG + V+DY+KEM+  M R  ++E+ EA MA
Sbjct: 264 WEEMKATMRRRFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREATMA 323

Query: 121 RFLNGLNTEIADKTNLQPYM 141
           RFLNGLN +IA+   LQ Y+
Sbjct: 324 RFLNGLNRDIANVVELQHYV 343

[Close]
BLAST of CmaCh00G001310 vs. TrEMBL
Match: E7BQD6_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-36
Identity = 73/143 (51.05%), Postives = 100/143 (69.93%), Query Frame = 1 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E YL+WE  +E +FNCHN+S+ +KV +   +FK+YA +WWD+L   RRR  E PID+W
Sbjct: 84  DPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLTKDRRRYAERPIDTW 143

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            E K  MR+RFVP Y+HR++  KLQ L QG K VE+Y+KEM+ L  R  ++ED EA MAR
Sbjct: 144 EEMKRIMRRRFVPSYYHRELHNKLQRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR 203

Query: 122 FLNGLNTEIADKTNLQPYMLCNE 145
           FL+GLN +I+D   L  Y+  +E
Sbjct: 204 FLHGLNHDISDIVELHHYVEMDE 226

[Close]
BLAST of CmaCh00G001310 vs. TrEMBL
Match: A5BYV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-36
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 1 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E YL+WEK VE +F CHN+S+EKKV L   +F  YA IWWD+L+  RRRN E PI  W
Sbjct: 137 DPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYAIIWWDQLVMKRRRNYERPIXIW 196

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            E K +M+KR VP +++RD+ QKLQ+L QG + V+DY+K+M+  M R  ++ED E  MAR
Sbjct: 197 EEMKATMKKRXVPSHYYRDLYQKLQSLTQGYRSVDDYHKKMEIAMIRANVEEDREVTMAR 256

Query: 122 FLNGLNTEIADKTNLQPYM 141
           FLNGLN +IA+   LQ Y+
Sbjct: 257 FLNGLNRDIANVVELQHYV 275

[Close]
BLAST of CmaCh00G001310 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-35
Identity = 72/143 (50.35%), Postives = 101/143 (70.63%), Query Frame = 1 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E YL+WE  +E +FNCHN+S+ +KV +   +FK+YA +WWD+L+  RRR  E PID+W
Sbjct: 84  DPEAYLEWETKLEQIFNCHNYSNLEKVQVASIEFKEYALVWWDQLIKDRRRYAERPIDTW 143

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            E K  MR+RFVP Y+HR++  KL+ L QG K VE+Y+KEM+ L  R  ++ED EA MAR
Sbjct: 144 EEMKRIMRRRFVPSYYHRELHNKLRRLTQGSKSVEEYFKEMEVLKIRANVEEDDEATMAR 203

Query: 122 FLNGLNTEIADKTNLQPYMLCNE 145
           FL+GLN +I+D   L  Y+  +E
Sbjct: 204 FLHGLNHDISDIVELHHYVEMDE 226

[Close]
BLAST of CmaCh00G001310 vs. TAIR10
Match: AT1G40129.1 (AT1G40129.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 37/145 (25.52%), Postives = 66/145 (45.52%), Query Frame = 1 

Query: 3   EEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWV 62
           +E+YL+WEK ++  F+  NF  E + +  ++     A  WW + +  R    E PI  W 
Sbjct: 88  KEDYLEWEKNMDEWFSYKNFLSEMRFVCALSHLTGNAYKWWLQEVEDRLYYKEPPITLWR 147

Query: 63  EFKESMRKRFVPQYFHRDMAQKLQA---LKQGRKFVEDYYKEMDTLMDRLELDEDMEALM 122
           + KE +R ++  Q  +R     + A     Q ++ V   Y + + + ++   DE     +
Sbjct: 148 DLKEFLRNKYALQVSNRSRKVSITAQGLAAQEKEQVLAPYSKKNPIAEQQLKDE-----I 207

Query: 123 ARFLNGLNTEIADKTNLQPYMLCNE 145
            + LN  N     K+  QP M+  E
Sbjct: 208 LKILNAYNKPKKAKSTSQPKMVTKE 227

[Close]
BLAST of CmaCh00G001310 vs. TAIR10
Match: AT2G15180.1 (AT2G15180.1 Zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 24/70 (34.29%), Postives = 36/70 (51.43%), Query Frame = 1 

Query: 6   YLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFK 65
           YLQWE  +   F  H+ + E K+ + + Q K  A  WWD+   +R     API +W   K
Sbjct: 119 YLQWESNMNYYFEFHSTAQEDKLSIALGQLKGSALWWWDQDEYNRWYERRAPIRTWERLK 178

Query: 66  ESMRKRFVPQ 76
            +M  ++ PQ
Sbjct: 179 WNMCAKYSPQ 188

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: gi|1000963681|ref|XP_015575421.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [Ricinus communis])

HSP 1 Score: 168.7 bits (426), Expect = 8.0e-39
Identity = 77/136 (56.62%), Postives = 103/136 (75.74%), Query Frame = 1 

Query: 9    WEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESM 68
            +EK VE +F+CH F++EKKV L I QF  YA  WWD+L+++RRRNLE PI++W + K  M
Sbjct: 1020 FEKQVELIFDCHQFNEEKKVELAITQFSNYAIAWWDQLVTNRRRNLEYPIETWHDLKSVM 1079

Query: 69   RKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNT 128
            RKRFVP++FHR++ Q++Q LKQG + V+DYYKEM+ +M R  +DEDME  MAR L  LN 
Sbjct: 1080 RKRFVPRHFHRELVQRIQVLKQGSRSVDDYYKEMEMIMTRATIDEDMETTMARSLASLNK 1139

Query: 129  EIADKTNLQPYMLCNE 145
            +IAD+ +LQPYM   E
Sbjct: 1140 DIADRVDLQPYMELEE 1155

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: gi|823166069|ref|XP_012482973.1| (PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii])

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 79/139 (56.83%), Postives = 101/139 (72.66%), Query Frame = 1 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E YL+WEK VE VF CHN+S+ KKV L   +F  YA IWWD+L  SRRRN E P+ +W
Sbjct: 143 DPEAYLEWEKKVELVFECHNYSESKKVKLAAIEFSDYAIIWWDQLTMSRRRNGERPVSTW 202

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
           VE K  MRKRF+P Y+HR++ QKLQ+L QG++ VEDYYKEM+  M R +++ED EA MAR
Sbjct: 203 VEMKAIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRADVEEDREATMAR 262

Query: 122 FLNGLNTEIADKTNLQPYM 141
           FL GLN +IA+   L  Y+
Sbjct: 263 FLAGLNRDIANIVELHHYV 281

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: gi|823138056|ref|XP_012468865.1| (PREDICTED: uncharacterized protein LOC105786943 [Gossypium raimondii])

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1 

Query: 4   EEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVE 63
           E YL+WEK VE VF CHN+S+ KKV L   +F  YA IWWD+L  SRRRN E P+ +W E
Sbjct: 13  EAYLEWEKKVELVFECHNYSESKKVKLAAIEFSDYAIIWWDQLSLSRRRNGERPVSTWAE 72

Query: 64  FKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFL 123
            K  MRKRF+P Y+HR++ QKLQ+L QG++ VEDYYKEM+  M R +++ED EA MARFL
Sbjct: 73  MKAIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRADMEEDREATMARFL 132

Query: 124 NGLNTEIADKTNLQPYM 141
            GLN EIA+   L  Y+
Sbjct: 133 AGLNREIANIVELHHYV 149

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: gi|823232051|ref|XP_012448731.1| (PREDICTED: uncharacterized protein LOC105771899 [Gossypium raimondii])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1 

Query: 4   EEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVE 63
           E YL+WEK VE VF CHN+S+ KKV L   +F  YA IWWD+L  SRRRN E P+ +W E
Sbjct: 13  EAYLEWEKKVELVFECHNYSESKKVKLAAIEFSDYAIIWWDQLSLSRRRNGERPVSTWAE 72

Query: 64  FKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMARFL 123
            K  MRKRF+P Y+HR++ QKLQ+L QG++ VEDYYKEM+  M R +++ED EA MARFL
Sbjct: 73  IKVIMRKRFIPAYYHRELYQKLQSLTQGQRSVEDYYKEMEVAMIRADMEEDREATMARFL 132

Query: 124 NGLNTEIADKTNLQPYM 141
            GLN EIA+   L  Y+
Sbjct: 133 AGLNREIANIVELHHYV 149

[Close]
BLAST of CmaCh00G001310 vs. NCBI nr
Match: gi|823145087|ref|XP_012472404.1| (PREDICTED: uncharacterized protein LOC105789579 [Gossypium raimondii])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1 

Query: 2   EEEEYLQWEKTVESVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 61
           + E YL+WEK +E VF CHN+S+ KKV L   +F  YA IWWD+ ++SRRRN E PI +W
Sbjct: 77  DPEVYLEWEKKIELVFECHNYSEAKKVKLAAIEFSDYAMIWWDQFVTSRRRNGERPITTW 136

Query: 62  VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKFVEDYYKEMDTLMDRLELDEDMEALMAR 121
            E K  MR+RF+P Y+HR++ QKLQ L QG K VEDYYKEM+  M R  + ED EA MAR
Sbjct: 137 TEMKVVMRRRFIPSYYHRELYQKLQNLTQGTKSVEDYYKEMEIAMIRANVQEDREATMAR 196

Query: 122 FLNGLNTEIADKTNLQPYM 141
           FL GLN EIA+   LQ YM
Sbjct: 197 FLAGLNREIANIVELQHYM 215

The following BLAST results are available for this feature:
BLAST of CmaCh00G001310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G001310 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AZG1_VITVI8.0e-3855.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1[more]
A5AMK2_VITVI1.4e-3754.29Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1[more]
E7BQD6_PEA9.8e-3651.05Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
A5BYV1_VITVI9.8e-3653.24Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1[more]
E7BQD7_PEA1.7e-3550.35Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
BLAST of CmaCh00G001310 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G40129.11.0e-0725.52 unknown protein[more]
AT2G15180.18.5e-0734.29 Zinc knuckle (CCHC-type) family protein[more]
BLAST of CmaCh00G001310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1000963681|ref|XP_015575421.1|8.0e-3956.62PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [R... [more]
gi|823166069|ref|XP_012482973.1|1.0e-3856.83PREDICTED: uncharacterized protein LOC105797563 [Gossypium raimondii][more]
gi|823138056|ref|XP_012468865.1|1.4e-3857.66PREDICTED: uncharacterized protein LOC105786943 [Gossypium raimondii][more]
gi|823232051|ref|XP_012448731.1|1.8e-3857.66PREDICTED: uncharacterized protein LOC105771899 [Gossypium raimondii][more]
gi|823145087|ref|XP_012472404.1|1.8e-3857.55PREDICTED: uncharacterized protein LOC105789579 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001310.1CmaCh00G001310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 34..128
score: 1.6
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 1..139
score: 1.5
NoneNo IPR availablePANTHERPTHR22847:SF490SUBFAMILY NOT NAMEDcoord: 1..139
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001310Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G001310Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001310Cucurbita maxima (Rimu)cmacmaB018