CmaCh00G001290 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001290
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
LocationCma_Chr00 : 7580789 .. 7582823 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAGCCAGACCGGGTCATTTCTCTAGAACGAACAATAGCTAAGGGGATACTACCACTTGGATTGATTTGGAACCTTCTTTCATGTTGATGCTCACGATTTCGATAGCCATACTAGTTGGAGGAGATCTCTCGAAAAAAGTCTTTAGTGCGCATTTTGACCAACTCTCCATCCATCTTTCTTTCTTTGTTTGGCTGAGTGGGATGTATTTTCACGGTGCTCCTTTTCCAATTATGAAGCATGGCTAGGCGATCCTACTCACATTGGCCCTAGTGTTAGGTGGTTTGGCCAATAGTGGGCCAAGAAATATTGAATGGTGATGTAGGCGGGGGGTTTCGAGGAATACAAATAACCTCTAGGTTTTTTCAGATGTGGAGAGCATCTGGAATAACTAGTGAATTACAACTTTATTGTACGGAAATTTGTGCATTAGTCTTTTCAGCCTTAATGCTTTTTGCCGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGCAAGATGTAGAATCCATGTTCAATCACCATTTAGCGTAGCGGGTCTGCTAGGACTTGGGGCTCTTTCTTGGGCGGGACATCAAGTACACCTATCTTTACCGATTAACCAATTTCTAAATGATGCTGGAGTAGATCCTAAAGAGATTCCACTTCCTCATGAATTTCTCTTGAATCGGGATCTTTTGGCGCAACTTTCTTCTAGTAAAGGGGAGGGAGCAACCCCATTTTTCACTTGTGGAATTGGTCAAAGAGGAATTTCTGACTTTTGGCAGAGCATTAGACCTAGTAACCGGTGGTCTATGGTTAACCAATATTGCACTCATTTAGCTATTACTATTCTTTTCCTGATAGCAGGTCTCATGTATAGATAGGACCAACTGGGGCATTGGTCAGGGTATAAAAGATATTTGAGAGGGAGGCTCATCAAGGTCCATTTACAGGCCAGGGTCATAAAGGACTATATGAGATCCTAACAACGTAAGGCCATGCTCCATTATCTATTCCACCTAGCTAAGTTAGGCTCTTTCACCATTATTGTAGCTCACCATATGTATGCGATGCCCCCTTATCCCTAGCTACTGATTATGGGACACAACTTTCATGGTTCAGACATCACAGTAGATTTCTCTTGGTGCTGCAGCACATGCAGGCATTTTTATGGATGGTAAGAGACTGTGATCCAACTACTCGCTACAAACAACGATTTATCGTGGACTTAGGCATCGCGATGCAATCATATCACATCTCAACTGGGAGGGTATGGATATTTTGAGGCTTTCACAGTTTTGGTATATTCATAATGATACCATGAGTGCCTGGTACCCCTATACAGGATACAAAACACCCATGCTTTAGCACCTAGTATAATGGCCCCAGGTCCAACAACAGGCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTGGCTTTGTTACCTATTCCGGTAGAAGCCGCAGATTCTTTGGTAATCATAGTCAGGCATTTACGATTCATGTAACGGTATTGATACTCCTTCAAGGGGTTCCATTTTCTCGTAGCTCGCATTTGATACTGGATAAAGCAAATGAAATCTAATCTTGGGTTTCGTTTCCCTTGTGATGGGCCAGGAAGAGGGGGTAGATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTTGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTGTAAGTGATCAAGGGGTAGTAACTCATATTACGGGAGGAAACTTTGCGCAGAGTTCCATCATTACTATTAATGGGAGGCTTCGCGATTTCTTATAGGCACAGGCATGCCAGGTAATTCAATCTTATGGTTCTTCTTTCTTCATTATCCGCATATGGACCGTTCGTTTTTCCTAGGTGCTCATTTTGGTATGGGCTTTGAGTTTCATCTTTCTATTTTATAGGCGTATTTATTGGCAAGAACTTATTGAATCCAGCGGTTTGGGCTCATAA

mRNA sequence

ATGGGTCAGCCAGACCGGGTCTCATGTATAGATAGGACCAACTGGGGCATTGGTCAGGGTCCAACAACAGGCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTGGCTTTGTTACCTATTCCGGTAGAAGCCGCAGATTCTTTGGAAGAGGGGGTAGATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTTGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTAGTTCCATCATTACTATTAATGGGAGGCTTCGCGATTTCTTATAGGCACAGGCATGCCAGGCGTATTTATTGGCAAGAACTTATTGAATCCAGCGGTTTGGGCTCATAA

Coding sequence (CDS)

ATGGGTCAGCCAGACCGGGTCTCATGTATAGATAGGACCAACTGGGGCATTGGTCAGGGTCCAACAACAGGCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGCAAAGTGGCTTTGTTACCTATTCCGGTAGAAGCCGCAGATTCTTTGGAAGAGGGGGTAGATGTCAAGTATTCGCTTGCTTGGGATCATGTCTTCTTAGGGCTATTTTTGATGGACAATTCCATTTTAGTAGTAAGTAATATGCCTGCCATTTACAGTGGAAAATGCAGTCAGATGTTTGGAGTAGTAGTTCCATCATTACTATTAATGGGAGGCTTCGCGATTTCTTATAGGCACAGGCATGCCAGGCGTATTTATTGGCAAGAACTTATTGAATCCAGCGGTTTGGGCTCATAA

Protein sequence

MGQPDRVSCIDRTNWGIGQGPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSLEEGVDVKYSLAWDHVFLGLFLMDNSILVVSNMPAIYSGKCSQMFGVVVPSLLLMGGFAISYRHRHARRIYWQELIESSGLGS
Homology
[Close]
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match: PSAA_CUCSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-09
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match: PSAA_NYMAL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Nymphaea alba GN=psaA PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-08
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G T GTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATAGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match: PSAA_VITVI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-08
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TT TSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match: PSAA_AMBTC (Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda GN=psaA PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-08
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TT TSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match: PSAA_PANGI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Panax ginseng GN=psaA PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-08
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TT TSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. TrEMBL
Match: V6BPV1_9ROSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Pyrus spinosa GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. TrEMBL
Match: V9ZBA1_9MAGN (Photosystem I P700 apoprotein A1 (Fragment) OS=Kalanchoe laciniata GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 477 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 511

[Close]
BLAST of CmaCh00G001290 vs. TrEMBL
Match: W8E7L7_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis hystrix GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. TrEMBL
Match: A0A0S2IE42_9ROSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma var. palmeri GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. TrEMBL
Match: A0A0S2IG57_CUCPE (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna GN=psaA PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. TAIR10
Match: ATCG00350.1 (ATCG00350.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G T  TSLTWGGG+LVAVGGKVALLPIP+  AD L
Sbjct: 498 GETASTSLTWGGGELVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. NCBI nr
Match: gi|590000415|ref|YP_009004044.1| (photosystem I P700 apoprotein A1 [Cucumis hystrix])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. NCBI nr
Match: gi|952954702|gb|ALO22061.1| (PsaA (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. NCBI nr
Match: gi|307543164|gb|ADN44175.1| (photosystem 1 subunit A, partial (chloroplast) [Brasenia sp. SM-2010])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 478 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 512

[Close]
BLAST of CmaCh00G001290 vs. NCBI nr
Match: gi|927372209|ref|YP_009164500.1| (photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Sedum oryzifolium])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

[Close]
BLAST of CmaCh00G001290 vs. NCBI nr
Match: gi|595645278|gb|AHM88740.1| (photosystem I P700 apoprotein A1, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1 

Query: 20  GPTTGTSLTWGGGDLVAVGGKVALLPIPVEAADSL 55
           G TTGTSLTWGGGDLVAVGGKVALLPIP+  AD L
Sbjct: 498 GATTGTSLTWGGGDLVAVGGKVALLPIPLGTADFL 532

The following BLAST results are available for this feature:
BLAST of CmaCh00G001290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAA_CUCSA9.9e-0985.71Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus GN=psaA PE=3 S... [more]
PSAA_NYMAL3.8e-0882.86Photosystem I P700 chlorophyll a apoprotein A1 OS=Nymphaea alba GN=psaA PE=3 SV=... [more]
PSAA_VITVI4.9e-0882.86Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV... [more]
PSAA_AMBTC4.9e-0882.86Photosystem I P700 chlorophyll a apoprotein A1 OS=Amborella trichopoda GN=psaA P... [more]
PSAA_PANGI4.9e-0882.86Photosystem I P700 chlorophyll a apoprotein A1 OS=Panax ginseng GN=psaA PE=3 SV=... [more]
BLAST of CmaCh00G001290 vs. TrEMBL
Match NameE-valueIdentityDescription
V6BPV1_9ROSA1.1e-0685.71Photosystem I P700 chlorophyll a apoprotein A1 OS=Pyrus spinosa GN=psaA PE=3 SV=... [more]
V9ZBA1_9MAGN1.1e-0685.71Photosystem I P700 apoprotein A1 (Fragment) OS=Kalanchoe laciniata GN=psaA PE=3 ... [more]
W8E7L7_9ROSI1.1e-0685.71Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis hystrix GN=psaA PE=3 S... [more]
A0A0S2IE42_9ROSI1.1e-0685.71Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita argyrosperma var. pa... [more]
A0A0S2IG57_CUCPE1.1e-0685.71Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucurbita pepo subsp. fraterna... [more]
BLAST of CmaCh00G001290 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00350.13.1e-0877.14ATCG00350.1 Photosystem I, PsaA/PsaB protein[more]
BLAST of CmaCh00G001290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590000415|ref|YP_009004044.1|1.6e-0685.71photosystem I P700 apoprotein A1 [Cucumis hystrix][more]
gi|952954702|gb|ALO22061.1|1.6e-0685.71PsaA (plastid) [Cucurbita ecuadorensis][more]
gi|307543164|gb|ADN44175.1|1.6e-0685.71photosystem 1 subunit A, partial (chloroplast) [Brasenia sp. SM-2010][more]
gi|927372209|ref|YP_009164500.1|1.6e-0685.71photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Sedum oryzifolium][more]
gi|595645278|gb|AHM88740.1|1.6e-0685.71photosystem I P700 apoprotein A1, partial (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009579thylakoid
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001290.1CmaCh00G001290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 22..131
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G001290CmaCh04G019690Cucurbita maxima (Rimu)cmacmaB018
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001290Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001290Cucurbita moschata (Rifu)cmacmoB000