CmaCh00G001280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
LocationCma_Chr00 : 7577009 .. 7580785 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACGTACTAAGGGGGATCTTTATATGGGAGGGGAGCTCTTCTTTTTCTATTCTTTCTTTCTGCCATATCTTTCATAGCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATGTCGCTATTCCTGCATCCAGGGGAGAATATGTTGGAAGAATTTCTTAGACGTATTGTAATATGAACCAAAAGACATCAATCATACAATATACTTCAATGAAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAGATGTTGATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATAGGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATGTGTAAGAGACTTGAAAAATATAGTAAAAAGAAGCATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGCTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAGCTAGACATGATCGATCTTCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCCTACTCCCCTTCTAGTGGTTTCTTTTCTTATCATTTGGTATCATAGCTTAAGGCTCAAGATGGGATATATGTTTCCTTTGCATTTCTTTTCAATTTTTTTTTATCTTTTTAGTTTTTAATCGACCCAAAATAAAAAAAAAAAAATCAAATATGGGCTCTACTAGAAAATTTGAGAGGTGAGGATGAGAGATTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGAGAGTGTTATGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAAATAGATTCGAGGATGAATCCTCTTGAAGAAGTGAAAAATGATATGAACCAAAAGACATCAATCATACAATATACTTCAATGACGATGTGAAAAAAAGGTTGTCAAAATTATCAAAAGATGTTTCAATTCATGCCCCATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTTATTGTATTTCATTTATGTATTTTAAGACTTTATTTACTATACGTTACAATTACATAATGGTTAATTATGGCCATTAAGTATGAATGTTACAACTCTTGGAATGACTTTAGTAGTTTCATTTTGAGGCTATGTTGTACGCGTAAGAAACTTGAAAAATATAGTAAAAAGAAACATTTGTGCTCTTCTGTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAAGGAAGTGTTCTTACCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTACTTCCCTTGTAGTGGTTCCTTTTCTTATCATATTGCCACATCCCTAAGGATTAGGACCACTTTAGCTGGGTCAGTGTAATCTTTATGCTCACCCGATTCAAATAATCATTGATTTGGTACTGCCGAAGGAGCAGGAACTGCCATTCTAACCCTTCTTTCTCTGGGATTCTCCATCCGCAAAGTTTCTAGCTGACTGATATGGCTCATCTTCATTTAGCTATTGCATTTCTTTTTCTTGTTGCTGGTCATATGTATAGATAGAACTAACTTCGGGGCTGGACAAAGTATAAAAGATCTTTTAGAAGCACATATTCGGGGGACGATTTGGGCGTGGACATAAAGTTATGACACAATCAATAATTCTCTTCATTTTCAATTAGGCCTTACTTTAGCCTCTTTAGGGGTTATTAGATTACATTACTGACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCGTTCATAGCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATGTAATGTATTGGCAAGAATGTTATAGACCATAAAGAAAAGAAGCTATCATATATATATCCCATTGAAGTTGGGCCAGCCTTTTTCTGGGGGGTTCCATACTTTGGGGCTTTAGGTTCGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCGGAGAAAGAAATCTTAATCGACACCCATATTTGCCCAATAGATTCAATCTGCTCATGGTCAAACTGAATATAGGTTCGATGTCCTTTTATCTTCAACAAGCGGCCTGACGTTCAATGCTGTTAAATAGTAATGCACTATTCTTCACAATAGGGCCCGAAGACTGATTGGTTCATCATGCTATTGCTTTAGGGTTACATATAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGGACATGGTTCCAAATGAATGCCGGATAAAAAGGATTTTGGTTATAGTTTTCCTTGGTCTGGGACGAGGTGGTACTTGTTATATTTCAGCTTGAGACACCTTTGGCCGTTTTCTGGATGTGAAATACCATTGGCTACTTTAGATTGGCACTGGAAGCACATCACATTGTGTATGGCAGGGTAACGTTTCCCAGTTTTATTCATCTTTCACTTACTTATTTGCTGGGATGGTTAAGAGATTCTTTATGGTTAAACTCTTCACAACTTCTCAATGGGATAATTAGAATTAATCCTTGTTGGTATGAATAGTTTATCAGTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

mRNA sequence

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

Coding sequence (CDS)

ATGAAAAGTTGCTCCTGCTACTCTCAGCCTAGAGCCTTGATTGAACATTGTCCAAGGACGTGCTGTAGGAGTAACCCATCCATTACCTTACCTTCTTGGTGGAATTGCCACAACATAGGCACTCTTTCTCTTCTTAGCAAGAATTATTGCAGTCGGATAATGGCTAGGAGGATTTGCATTATGGCACTAGGATTTCCAAGGTTTAGCCAAGGCTTAACTCAGGACCCCACTACTCGTGGTATTTGGTTTGGTATTGCTACCGCGCCTGACTTCGAAAGGCATGATGATATTACTGAAGAACGTCTTTATCATCATCTTTTTGCTTCCTTCGCATTTCGGGCAATTAGCAAGAATTTGTCTGTGTATACTTCTATAAATCTCTTTCATGTAGCTTGGCAAGGAAATTTTGAAGCATGGGTACAAGCAAGACCCTTTCCATGTAAGACCTATTTGCAATTTTGGATCCTCGGTCAACCGGAAAAGCTTTTACTCGAGGGGGTGCTCCCAGTGAATATCGCTTATTCTGGTGTTTCTTTCTTTCTCAGTGGTGGTATACAATCGGGTTACCGGGTTGGTTACACCTACAACCGAAATCGAAAGCGAGCCTTTCGTGGTTTCAAAATGCCGAATCTCGTCTCAATCATCATTTGTCATGACTATTCATTTGGAGTCAGTTCCTTGGCTTGGACAGGCCATTTCAGCCATCACAAGAAGACGACTCGACTACTCTACTCAAGCTGCGTTATATACCCATCACCAATACATAGCAGGATGAATTATGACAGACAGGAGCTTTTGCTCATGGAGCTATATTCTAGAGATTACAATACCAAACAGAATGAGGATAATTCCGGGGGCGCGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTCTATTCTGAATTTCCTGGCGGGGGGATATTGGTAA

Protein sequence

MKSCSCYSQPRALIEHCPRTCCRSNPSITLPSWWNCHNIGTLSLLSKNYCSRIMARRICIMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFASFAFRAISKNLSVYTSINLFHVAWQGNFEAWVQARPFPCKTYLQFWILGQPEKLLLEGVLPVNIAYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSIIICHDYSFGVSSLAWTGHFSHHKKTTRLLYSSCVIYPSPIHSRMNYDRQELLLMELYSRDYNTKQNEDNSGGADVLIWTSCLGYWISILNFLAGGYW
Homology
[Close]
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match: PSAB_PELHO (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum GN=psaB PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match: PSAB_EUCGG (Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. globulus GN=psaB PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match: PSAB_OENEH (Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri GN=psaB PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match: PSAB_LACSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa GN=psaB PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-33
Identity = 98/208 (47.12%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +         + + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLLISAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match: PSAB_MORIN (Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica GN=psaB PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.5e-33
Identity = 99/208 (47.60%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNGDLYNGALFLLFISAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. TrEMBL
Match: F4YK62_9ERIC (Photosystem I P700 apoprotein A2 (Fragment) OS=Franklinia alatamaha GN=psaB PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.2e-33
Identity = 101/207 (48.79%), Postives = 113/207 (54.59%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQARPFPCKTYLQ-FW--ILGQP--EKLLLEGVL-PVNIA 180
            ++TS NLFHVAWQGNFE+WVQ  PF CK      W    GQP  E     G L PVNIA
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQ-DPFTCKAIAHAIWDPHFGQPAVEAFTRGGALGPVNIA 120

Query: 181 YSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII------------------ 236
           YSGV        Q  Y +G   N +           + +S+I                  
Sbjct: 121 YSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFK 180

[Close]
BLAST of CmaCh00G001280 vs. TrEMBL
Match: A7M965_CUSRE (Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta reflexa GN=psaB PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 99/208 (47.60%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLYH++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYHNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLHTNEDLYTGALFLLFISAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. TrEMBL
Match: A0A0N9XN80_9ROSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Ficus racemosa GN=psaB PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 100/209 (47.85%), Postives = 113/209 (54.07%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 4   IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 63

Query: 120 LSVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 179
           + ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 64  IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 123

Query: 180 IAYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII---------------- 236
           IAYSGV        Q  Y +G   N +           + +S+I                
Sbjct: 124 IAYSGV-------YQWWYTIGLRTNGDLYNGALFLLFLSAISLIAGWLHLQPKWKPSVSW 183

[Close]
BLAST of CmaCh00G001280 vs. TrEMBL
Match: H6WAI9_9ROSA (Photosystem I P700 chlorophyll a apoprotein A2 OS=Pentactina rupicola GN=psaB PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 100/208 (48.08%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + VS+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFISAVSLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. TrEMBL
Match: A0A0U2H3U7_HUMLU (Photosystem I P700 chlorophyll a apoprotein A2 OS=Humulus lupulus GN=psaB PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 99/208 (47.60%), Postives = 114/208 (54.81%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +         + +++S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNGDLYNGALFLLVLSVISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. TAIR10
Match: ATCG00340.1 (ATCG00340.1 Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 138.7 bits (348), Expect = 6.3e-33
Identity = 97/201 (48.26%), Postives = 113/201 (56.22%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFETWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGV-SFFLSGGIQSGYR----------------VGYTYNRNRKRAFRGFKMPNLVSII 236
           AYSGV  ++ + G+++                   +G   +   K   R     N  S +
Sbjct: 121 AYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRL 180

[Close]
BLAST of CmaCh00G001280 vs. NCBI nr
Match: gi|306486078|gb|ADM92685.1| (photosystem I P700 apoprotein A2 [Franklinia alatamaha])

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 101/207 (48.79%), Postives = 113/207 (54.59%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQARPFPCKTYLQ-FW--ILGQP--EKLLLEGVL-PVNIA 180
            ++TS NLFHVAWQGNFE+WVQ  PF CK      W    GQP  E     G L PVNIA
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQ-DPFTCKAIAHAIWDPHFGQPAVEAFTRGGALGPVNIA 120

Query: 181 YSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII------------------ 236
           YSGV        Q  Y +G   N +           + +S+I                  
Sbjct: 121 YSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSAISLIAGWLHLQPKWKPSVSWFK 180

[Close]
BLAST of CmaCh00G001280 vs. NCBI nr
Match: gi|156618825|ref|YP_001430107.1| (photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta reflexa])

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 99/208 (47.60%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLYH++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYHNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFE+WVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFESWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + +S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLHTNEDLYTGALFLLFISAISLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. NCBI nr
Match: gi|944542081|ref|YP_009176004.1| (photosystem I P700 apoprotein A2 (chloroplast) [Ficus racemosa])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 100/209 (47.85%), Postives = 113/209 (54.07%), Query Frame = 1 

Query: 60  IMALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKN 119
           IMAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   
Sbjct: 4   IMALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI--- 63

Query: 120 LSVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVN 179
           + ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVN
Sbjct: 64  IFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVN 123

Query: 180 IAYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII---------------- 236
           IAYSGV        Q  Y +G   N +           + +S+I                
Sbjct: 124 IAYSGV-------YQWWYTIGLRTNGDLYNGALFLLFLSAISLIAGWLHLQPKWKPSVSW 183

[Close]
BLAST of CmaCh00G001280 vs. NCBI nr
Match: gi|377829874|ref|YP_005296099.1| (psaB gene product (chloroplast) [Pentactina rupicola])

HSP 1 Score: 144.8 bits (364), Expect = 2.5e-31
Identity = 100/208 (48.08%), Postives = 112/208 (53.85%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           + VS+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFISAVSLIAGWLHLQPKWKPSVSWF 180

[Close]
BLAST of CmaCh00G001280 vs. NCBI nr
Match: gi|570880226|ref|YP_008994500.1| (photosystem I P700 apoprotein A2 (chloroplast) (chloroplast) [Hypseocharis bilobata])

HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31
Identity = 99/208 (47.60%), Postives = 113/208 (54.33%), Query Frame = 1 

Query: 61  MALGFPRFSQGLTQDPTTRGIWFGIATAPDFERHDDITEERLYHHLFAS-FAFRAISKNL 120
           MAL FPRFSQGL QDPTTR IWFGIATA DFE HDDITEERLY ++FAS F   AI   +
Sbjct: 1   MALRFPRFSQGLAQDPTTRRIWFGIATAHDFESHDDITEERLYQNIFASHFGQLAI---I 60

Query: 121 SVYTSINLFHVAWQGNFEAWVQ----ARPFPCKTYLQFWILGQP--EKLLLEGVL-PVNI 180
            ++TS NLFHVAWQGNFEAWVQ     RP     +   +  GQP  E     G L PVNI
Sbjct: 61  FLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAHAIWDPHF--GQPAVEAFTRGGALGPVNI 120

Query: 181 AYSGVSFFLSGGIQSGYRVGYTYNRNRKRAFRGFKMPNLVSII----------------- 236
           AYSGV        Q  Y +G   N +           +++S+I                 
Sbjct: 121 AYSGV-------YQWWYTIGLRTNEDLYTGALFLLFLSVISLIAGWFHLQPKWKPSLSWF 180

The following BLAST results are available for this feature:
BLAST of CmaCh00G001280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSAB_PELHO3.5e-3347.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Pelargonium hortorum GN=psaB P... [more]
PSAB_EUCGG3.5e-3347.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Eucalyptus globulus subsp. glo... [more]
PSAB_OENEH3.5e-3347.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Oenothera elata subsp. hookeri... [more]
PSAB_LACSA4.5e-3347.12Photosystem I P700 chlorophyll a apoprotein A2 OS=Lactuca sativa GN=psaB PE=3 SV... [more]
PSAB_MORIN4.5e-3347.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Morus indica GN=psaB PE=3 SV=1[more]
BLAST of CmaCh00G001280 vs. TrEMBL
Match NameE-valueIdentityDescription
F4YK62_9ERIC9.2e-3348.79Photosystem I P700 apoprotein A2 (Fragment) OS=Franklinia alatamaha GN=psaB PE=3... [more]
A7M965_CUSRE1.3e-3147.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Cuscuta reflexa GN=psaB PE=3 S... [more]
A0A0N9XN80_9ROSA1.7e-3147.85Photosystem I P700 chlorophyll a apoprotein A2 OS=Ficus racemosa GN=psaB PE=3 SV... [more]
H6WAI9_9ROSA1.7e-3148.08Photosystem I P700 chlorophyll a apoprotein A2 OS=Pentactina rupicola GN=psaB PE... [more]
A0A0U2H3U7_HUMLU2.3e-3147.60Photosystem I P700 chlorophyll a apoprotein A2 OS=Humulus lupulus GN=psaB PE=3 S... [more]
BLAST of CmaCh00G001280 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00340.16.3e-3348.26ATCG00340.1 Photosystem I, PsaA/PsaB protein[more]
BLAST of CmaCh00G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|306486078|gb|ADM92685.1|1.3e-3248.79photosystem I P700 apoprotein A2 [Franklinia alatamaha][more]
gi|156618825|ref|YP_001430107.1|1.9e-3147.60photosystem I P700 chlorophyll a apoprotein A2 (chloroplast) [Cuscuta reflexa][more]
gi|944542081|ref|YP_009176004.1|2.5e-3147.85photosystem I P700 apoprotein A2 (chloroplast) [Ficus racemosa][more]
gi|377829874|ref|YP_005296099.1|2.5e-3148.08psaB gene product (chloroplast) [Pentactina rupicola][more]
gi|570880226|ref|YP_008994500.1|3.2e-3147.60photosystem I P700 apoprotein A2 (chloroplast) (chloroplast) [Hypseocharis bilob... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001280PSI_PsaA/B
Vocabulary: Cellular Component
TermDefinition
GO:0009522photosystem I
GO:0009579thylakoid
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001280.1CmaCh00G001280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3DG3DSA:1.20.1130.10coord: 65..235
score: 2.3
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 68..196
score: 9.0
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 65..255
score: 3.27
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 63..177
score: 1.5
NoneNo IPR availablePANTHERPTHR30128:SF4PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2coord: 63..177
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001280Cucurbita moschata (Rifu)cmacmoB000
CmaCh00G001280Cucurbita maxima (Rimu)cmacmaB004
CmaCh00G001280Cucurbita maxima (Rimu)cmacmaB018