CmaCh00G000970 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G000970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Apocytochrome f
Location	Cma_Chr00 : 4657825 .. 4658529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCTCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCCCCCGATCGTATTTCTCCCAAGATTAAAGAAAAGATGGACAATCCTTTCAAATAAAAGATTCTTGTGATAGGGCCCGTTCCTGGTCAGAAATATAGTGAAATAACCTTTCCTATTCNAATAAAAGATTCTTGTGATAGGGCTCGTTCCTAGTTAGAAATATAGTGAAATAACCTTTCCTATTCTTTCCCCGGACCTTGCGACTAAGAAAGATGTTCACTTCTAAAAATATCCCATATACGGAGGTGGGAACAGTGGAAGGGGTCAGATTTACCTGGGAGTCAAAGCCATAATAATGTTGATAATGCTACACAGGTATAGTAAGCAAAATACTACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCCAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAATGAGTAA

mRNA sequence

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCTCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCCCCCGATCTAAGCAAAATACTACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCCAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAATGAGTAA

Coding sequence (CDS)

ATGAAAATCCACGAGAAGCAACCAATCGGCCGTATTGTCTGCGCAAACTGCCATTTAGCTAATAAGCTCGTGTCGAGGTTCCACAAGCAATACTTCCTGATACTTTCTTGCGAATGGGAAAAGGGTTTGAATGTGTCGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCCCCCGATCTAAGCAAAATACTACGAAAAGAAAAGGGAGGATATGAAATAACCATAGTGGATGCATCCAATGAGCGGCAAGTGGTTGATATTATCCCTCCAGGACCAGAACTTCTTGTTTCAGAGGGCGGGCGAATCTATCAAAATCAATCAACCATTAATGAGTAA

Protein sequence

MKIHEKQPIGRIVCANCHLANKLVSRFHKQYFLILSCEWEKGLNVSAVLILPEGFELAPPPDLSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQSTINE

Homology

[Close]

BLAST of CmaCh00G000970 vs. Swiss-Prot
Match: CYF_CUCSA (Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-14
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDA+N RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. Swiss-Prot
Match: CYF_CARPA (Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-14
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKILRKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKILRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. Swiss-Prot
Match: CYF_EUCGG (Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-14
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITI DAS+ERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITISDASDERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. Swiss-Prot
Match: CYF_MORIN (Cytochrome f OS=Morus indica GN=petA PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. Swiss-Prot
Match: CYF_HELAN (Cytochrome f OS=Helianthus annuus GN=petA PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKILRKEKGGYEITI DAS+ RQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKILRKEKGGYEITIADASDGRQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. TrEMBL
Match: A0A0D2ZXA0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-14
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 6   KQPIGRIVCANCHLANKLVSRFHKQYFLILSCEWEKGLNVSAVLILPEGFELAPPPDLSK 65
           ++  GRIVCANCHLA+K V     Q  L             AV+ +P   +L       +
Sbjct: 14  REATGRIVCANCHLASKPVDIEVPQAVL-------PDTVFEAVVKIPYDMQL------KQ 73

Query: 66  ILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +L  EKGGYEITIVDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 74  VLANEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQ 104

[Close]

BLAST of CmaCh00G000970 vs. TrEMBL
Match: A0A078DSV9_BRANA (BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-14
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 6   KQPIGRIVCANCHLANKLVSRFHKQYFLILSCEWEKGLNVSAVLILPEGFELAPPPDLSK 65
           ++  GRIVCANCHLA+K V     Q  L             AV+ +P   +L       +
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVL-------PDTVFEAVVKIPYDMQL------KQ 107

Query: 66  ILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +L  EKGGYEITIVDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VLANEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000970 vs. TrEMBL
Match: A0A0S2IGF5_CUCPE (Cytochrome f OS=Cucurbita pepo var. ozarkana GN=petA PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. TrEMBL
Match: A0A0S2IFU8_9ROSI (Cytochrome f OS=Cucurbita ficifolia GN=petA PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESINLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. TrEMBL
Match: A0A0S2IFA5_9ROSI (Cytochrome f OS=Cucurbita andreana GN=petA PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. TAIR10
Match: ATCG00540.1 (ATCG00540.1 photosynthetic electron transfer A)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKILRKEKGGYEITIVDASN R+V+DIIP G ELLVSEG  I  +Q
Sbjct: 214 ISKILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. NCBI nr
Match: gi|674933466|emb|CDX99940.1| (BnaC09g27650D [Brassica napus])

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 6   KQPIGRIVCANCHLANKLVSRFHKQYFLILSCEWEKGLNVSAVLILPEGFELAPPPDLSK 65
           ++  GRIVCANCHLA+K V     Q  L             AV+ +P   +L       +
Sbjct: 48  REATGRIVCANCHLASKPVDIEVPQAVL-------PDTVFEAVVKIPYDMQL------KQ 107

Query: 66  ILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +L  EKGGYEITIVDASNERQV+DIIP G ELLVSEG  I  +Q
Sbjct: 108 VLANEKGGYEITIVDASNERQVIDIIPRGLELLVSEGESIKLDQ 138

[Close]

BLAST of CmaCh00G000970 vs. NCBI nr
Match: gi|952954735|gb|ALO22093.1| (PetA (plastid) [Cucurbita ficifolia])

HSP 1 Score: 82.0 bits (201), Expect = 7.3e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESINLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. NCBI nr
Match: gi|952955442|gb|ALO22790.1| (PetA (plastid) [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 7.3e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. NCBI nr
Match: gi|952954342|gb|ALO21706.1| (PetA (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 82.0 bits (201), Expect = 7.3e-13
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEITIVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

[Close]

BLAST of CmaCh00G000970 vs. NCBI nr
Match: gi|952954600|gb|ALO21960.1| (PetA (plastid) [Cucurbita digitata])

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1


Query: 63  LSKILRKEKGGYEITIVDASNERQVVDIIPPGPELLVSEGGRIYQNQ 110
           +SKI+RKEKGGYEI+IVDASNERQVVDIIPPGPELLVSEG  I  +Q
Sbjct: 214 VSKIIRKEKGGYEISIVDASNERQVVDIIPPGPELLVSEGESIKLDQ 260

The following BLAST results are available for this feature:

BLAST of CmaCh00G000970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYF_CUCSA	6.6e-14	80.85	Cytochrome f OS=Cucumis sativus GN=petA PE=3 SV=1	[more]
CYF_CARPA	6.6e-14	82.98	Cytochrome f OS=Carica papaya GN=petA PE=3 SV=1	[more]
CYF_EUCGG	8.6e-14	80.85	Cytochrome f OS=Eucalyptus globulus subsp. globulus GN=petA PE=3 SV=1	[more]
CYF_MORIN	1.1e-13	80.85	Cytochrome f OS=Morus indica GN=petA PE=3 SV=1	[more]
CYF_HELAN	1.9e-13	80.85	Cytochrome f OS=Helianthus annuus GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G000970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2ZXA0_BRAOL	3.5e-14	50.00	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078DSV9_BRANA	3.5e-14	50.00	BnaA10g14000D protein OS=Brassica napus GN=BnaA10g14000D PE=4 SV=1	[more]
A0A0S2IGF5_CUCPE	5.1e-13	85.11	Cytochrome f OS=Cucurbita pepo var. ozarkana GN=petA PE=3 SV=1	[more]
A0A0S2IFU8_9ROSI	5.1e-13	85.11	Cytochrome f OS=Cucurbita ficifolia GN=petA PE=3 SV=1	[more]
A0A0S2IFA5_9ROSI	5.1e-13	85.11	Cytochrome f OS=Cucurbita andreana GN=petA PE=3 SV=1	[more]

BLAST of CmaCh00G000970 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00540.1	3.5e-13	76.60	ATCG00540.1 photosynthetic electron transfer A	[more]

BLAST of CmaCh00G000970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|674933466\|emb\|CDX99940.1\|	5.0e-14	50.00	BnaC09g27650D [Brassica napus]	[more]
gi\|952954735\|gb\|ALO22093.1\|	7.3e-13	85.11	PetA (plastid) [Cucurbita ficifolia]	[more]
gi\|952955442\|gb\|ALO22790.1\|	7.3e-13	85.11	PetA (plastid) [Cucurbita pepo subsp. pepo]	[more]
gi\|952954342\|gb\|ALO21706.1\|	7.3e-13	85.11	PetA (plastid) [Cucurbita argyrosperma]	[more]
gi\|952954600\|gb\|ALO21960.1\|	2.1e-12	82.98	PetA (plastid) [Cucurbita digitata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002325	Cyt_f
IPR024094	Cyt_f_lg_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding
GO:0009055	electron carrier activity
GO:0020037	heme binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0031361	integral component of thylakoid membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000970.1	CmaCh00G000970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 63..111 score: 4.
IPR002325	Cytochrome f	PROFILE	PS51010	CYTF	coord: 1..95 score: 13
IPR024094	Cytochrome f large domain	GENE3D	G3DSA:2.60.40.830		coord: 8..25 score: 7.7E-4coord: 40..74 score: 2.
IPR024094	Cytochrome f large domain	unknown	SSF49441	Cytochrome f, large domain	coord: 7..95 score: 4.71
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 75..109 score: 2.0
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 9..109 score: 1.7
None	No IPR available	PANTHER	PTHR33288:SF3	APOCYTOCHROME F	coord: 9..109 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G000970	CmaCh00G000350	Cucurbita maxima (Rimu)	cmacmaB002
CmaCh00G000970	CmaCh12G007760	Cucurbita maxima (Rimu)	cmacmaB006

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G000970	Cucurbita moschata (Rifu)	cmacmoB000
CmaCh00G000970	Cucurbita moschata (Rifu)	cmacmoB003