CmaCh00G000870 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G000870
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH-quinone oxidoreductase subunit C
LocationCma_Chr00 : 4297716 .. 4297937 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

mRNA sequence

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

Coding sequence (CDS)

ATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAATGTGTGGTTTCTAAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

Protein sequence

MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRYFDFASPWEQRSDG
Homology
[Close]
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match: NDUS3_ORYSJ (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. japonica GN=NAD9 PE=2 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-35
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match: NDUS3_SOLTU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NAD9 PE=1 SV=3)

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-35
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGV SINHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVFSINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match: NDUS3_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana GN=NAD9 PE=2 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 7.4e-35
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYV+VRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match: NDUS3_BETTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna GN=NAD9 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRS 72
           FDFASPWEQR+
Sbjct: 178 FDFASPWEQRN 188

[Close]
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match: NDUS3_PATWE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Patellifolia webbiana GN=NAD9 PE=3 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-33
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRI TDYGFEGHPLRKD PLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRS 72
           FDFASPWEQR+
Sbjct: 178 FDFASPWEQRN 188

[Close]
BLAST of CmaCh00G000870 vs. TrEMBL
Match: A0A0K1ZFS7_MONFI (NADH dehydrogenase subunit 9 OS=Monarda fistulosa var. mollis GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. TrEMBL
Match: Q9MFG7_LUPMU (NADH dehydrogenase subunit 9 OS=Lupinus mutabilis GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. TrEMBL
Match: W5AP49_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. TrEMBL
Match: A0A0M4JB57_TOBAC (NADH dehydrogenase subunit 9 OS=Nicotiana tabacum GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. TrEMBL
Match: A0A0K1ZFT7_9ERIC (NADH dehydrogenase subunit 9 OS=Androsace occidentalis GN=nad9 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.1e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. TAIR10
Match: ATMG00070.1 (ATMG00070.1 NADH dehydrogenase subunit 9)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-37
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVS INHPDLRRISTDYGFEGHPLRKDLPLSGYV+VRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSFINHPDLRRISTDYGFEGHPLRKDLPLSGYVQVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. NCBI nr
Match: gi|651729773|ref|YP_009041188.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Rhazya stricta])

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. NCBI nr
Match: gi|404481699|ref|YP_006666131.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Malus domestica])

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. NCBI nr
Match: gi|323149051|ref|YP_004222820.1| (NADH dehydrogenase subunit 9 [Vigna radiata])

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. NCBI nr
Match: gi|916446916|gb|AKZ24896.1| (NADH dehydrogenase subunit 9 (mitochondrion) [Verbascum thapsus])

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

[Close]
BLAST of CmaCh00G000870 vs. NCBI nr
Match: gi|604304937|gb|EYU24161.1| (hypothetical protein MIMGU_mgv1a014413mg [Erythranthe guttata])

HSP 1 Score: 154.5 bits (389), Expect = 7.4e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 

Query: 1   MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKCVVSKPIEMTQEFRY 60
           MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEK VVS+PIEMTQEFRY
Sbjct: 118 MFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKHVVSEPIEMTQEFRY 177

Query: 61  FDFASPWEQRSDG 74
           FDFASPWEQRSDG
Sbjct: 178 FDFASPWEQRSDG 190

The following BLAST results are available for this feature:
BLAST of CmaCh00G000870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUS3_ORYSJ3.3e-3593.15NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Oryza sativa subsp. jap... [more]
NDUS3_SOLTU3.3e-3593.15NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NA... [more]
NDUS3_ARATH7.4e-3591.78NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Arabidopsis thaliana GN... [more]
NDUS3_BETTR1.8e-3391.55NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Beta trigyna GN=NAD9 PE... [more]
NDUS3_PATWE1.8e-3391.55NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Patellifolia webbiana G... [more]
BLAST of CmaCh00G000870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K1ZFS7_MONFI5.1e-3597.26NADH dehydrogenase subunit 9 OS=Monarda fistulosa var. mollis GN=nad9 PE=3 SV=1[more]
Q9MFG7_LUPMU5.1e-3597.26NADH dehydrogenase subunit 9 OS=Lupinus mutabilis GN=nad9 PE=3 SV=1[more]
W5AP49_WHEAT5.1e-3597.26Uncharacterized protein OS=Triticum aestivum PE=3 SV=1[more]
A0A0M4JB57_TOBAC5.1e-3597.26NADH dehydrogenase subunit 9 OS=Nicotiana tabacum GN=nad9 PE=3 SV=1[more]
A0A0K1ZFT7_9ERIC5.1e-3597.26NADH dehydrogenase subunit 9 OS=Androsace occidentalis GN=nad9 PE=3 SV=1[more]
BLAST of CmaCh00G000870 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00070.12.9e-3794.52ATMG00070.1 NADH dehydrogenase subunit 9[more]
BLAST of CmaCh00G000870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|651729773|ref|YP_009041188.1|7.4e-3597.26NADH dehydrogenase subunit 9 (mitochondrion) [Rhazya stricta][more]
gi|404481699|ref|YP_006666131.1|7.4e-3597.26NADH dehydrogenase subunit 9 (mitochondrion) [Malus domestica][more]
gi|323149051|ref|YP_004222820.1|7.4e-3597.26NADH dehydrogenase subunit 9 [Vigna radiata][more]
gi|916446916|gb|AKZ24896.1|7.4e-3597.26NADH dehydrogenase subunit 9 (mitochondrion) [Verbascum thapsus][more]
gi|604304937|gb|EYU24161.1|7.4e-3597.26hypothetical protein MIMGU_mgv1a014413mg [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001268NADH_UbQ_OxRdtase_30kDa_su
Vocabulary: Molecular Function
TermDefinition
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respiratory chain
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000870.1CmaCh00G000870.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPRODOMPD001581coord: 1..21
score: 7.
IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitPFAMPF00329Complex1_30kDacoord: 1..35
score: 2.3
NoneNo IPR availablePANTHERPTHR10884NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3coord: 1..73
score: 3.6
NoneNo IPR availablePANTHERPTHR10884:SF11SUBFAMILY NOT NAMEDcoord: 1..73
score: 3.6
NoneNo IPR availableunknownSSF143243Nqo5-likecoord: 1..67
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G000870CmoCh00G000870Cucurbita moschata (Rifu)cmacmoB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G000870Cucurbita maxima (Rimu)cmacmaB002
CmaCh00G000870Cucurbita maxima (Rimu)cmacmaB006
CmaCh00G000870Cucurbita moschata (Rifu)cmacmoB003